[Debichem-commits] New commit [tandem-mass]: 07/07: Fixes to the packaging (mainly d/control stuff).

Filippo Rusconi lopippo at moszumanska.debian.org
Wed Aug 23 06:20:04 UTC 2017


This is an automated email from the git hooks/post-receive script.

lopippo pushed a commit to annotated tag master/20170201.1-1
in repository tandem-mass.

commit 3b0638b5f2e8760cad49522771e08e6f1957bb58
Author: Filippo Rusconi (Uploading Debian Developer) <lopippo at debian.org>
Date:   Tue Aug 22 16:12:25 2017 +0200

    Fixes to the packaging (mainly d/control stuff).
---
 debian/changelog                     |  7 ++++++-
 debian/compat                        |  3 ++-
 debian/control                       | 32 ++------------------------------
 debian/rules                         |  2 +-
 debian/tandem-mass.lintian-overrides |  2 --
 5 files changed, 11 insertions(+), 35 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 349b490..c174b3f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,11 +1,16 @@
 tandem-mass (1:20170201.1-1) unstable; urgency=low
 
   * debian/control: add secure vcs-git url.
+                    StandardsVersion : 4.0.0 (no changes)
+                    debian/compat set to 9
+                    removed the dbg binary package stanza: 
+                    thus, set debhelper (>= 9.20151219)
 
   * debian/patches: add patch to fix pointer vs integer comparison (gcc
     7-spotted).
 
-  * test of the patch by Olivier Langella <olivier.langella at u-psud.fr>.
+ 	* successful test of the patch by Olivier Langella
+  	<olivier.langella at u-psud.fr>.
 
  -- Filippo Rusconi <lopippo at debian.org>  Tue, 22 Aug 2017 15:36:59 +0200
 
diff --git a/debian/compat b/debian/compat
index 7f8f011..48c962f 100644
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1,2 @@
-7
+9
+
diff --git a/debian/control b/debian/control
index a8198dc..2dae793 100644
--- a/debian/control
+++ b/debian/control
@@ -3,8 +3,8 @@ Section: science
 Priority: optional
 Maintainer: The Debichem Group <debichem-devel at lists.alioth.debian.org>
 Uploaders: Filippo Rusconi <lopippo at debian.org>
-Standards-Version: 3.9.7
-Build-Depends: debhelper (>= 9.20130630),
+Standards-Version: 4.0.0
+Build-Depends: debhelper (>= 9.20151219),
                dpkg-dev (>= 1.16.1~),
                libexpat1-dev (>= 2.0.1)
 Homepage: http://www.thegpm.org/TANDEM/
@@ -35,31 +35,3 @@ Description: mass spectrometry software for protein identification
  be found here. Therefore, separate assembly and statistical analysis
  software, e.g. PeptideProphet and ProteinProphet, do not need to be
  used.
-
-Package: tandem-mass-dbg
-Section: debug
-Priority: extra
-Architecture: any
-Depends: ${misc:Depends}, tandem-mass (= ${binary:Version})
-Description: mass spectrometry software for protein identification - debug symbols
- X! Tandem can match tandem mass spectra with peptide sequences, in a
- process that is commonly used to perform protein identification.
- .
- This software has a very simple, unsophisticated application
- programming interface (API): it simply takes an XML file of
- instructions on its command line, and outputs the results into an XML
- file, which has been specified in the input XML file. The output file
- format is described at
- http://www.thegpm.org/docs/X_series_output_form.pdf
- .
- Unlike some earlier generation search engines, all of the X! Series
- search engines calculate statistical confidence (expectation values)
- for all of the individual spectrum-to-sequence assignments. They also
- reassemble all of the peptide assignments in a data set onto the
- known protein sequences and assign the statistical confidence that
- this assembly and alignment is non-random. The formula for which can
- be found here. Therefore, separate assembly and statistical analysis
- software, e.g. PeptideProphet and ProteinProphet, do not need to be
- used.
- .
- This package provides the debugging symbols for tandem-mass.
diff --git a/debian/rules b/debian/rules
index 1c855ff..aeb69a1 100755
--- a/debian/rules
+++ b/debian/rules
@@ -72,7 +72,7 @@ binary-arch: build-arch
 	dh_install
 	dh_installman
 	dh_lintian
-	dh_strip --dbg-package=tandem-mass-dbg -a
+	dh_strip -a
 	dh_compress
 	dh_fixperms
 	dh_installdeb
diff --git a/debian/tandem-mass.lintian-overrides b/debian/tandem-mass.lintian-overrides
index 049874b..0063016 100644
--- a/debian/tandem-mass.lintian-overrides
+++ b/debian/tandem-mass.lintian-overrides
@@ -1,5 +1,3 @@
 no-upstream-changelog
 spelling-error-in-binary
-hardening-no-relro
-hardening-no-pie
 hardening-no-bindnow

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debichem/packages/tandem-mass.git



More information about the Debichem-commits mailing list