[Debichem-devel] Bug#551244: avogadro: FTBFS: sip.cpp:142: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'

[Lucas Nussbaum]

Source: avogadro
Version: 0.9.7-1
Severity: serious
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20091016 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> /usr/bin/g++  -fPIC -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,residuecolor.so -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/lib/libGLEW.so -L/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/colors/.. ../../../lib/libavogadro.so.0.9.7 -lopenbabel -lQtOpenGL -lGLU -lGL -lQtGui -lX11 -lm -lQtNetwork -lQtCore -lpthread -ldl -lGLU -lGL -lX11 -lm -lQtNetwork -lQtCore -lpthread -ldl -lGLU -lGL -lGLEW -lpython2.5 -lboost_python 
> make[3]: Leaving directory `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 76%] Built target residuecolor
> /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend
> make[3]: Entering directory `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 76%] Generating moleculelist.moc
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/moc-qt4 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python/moleculelist.moc /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/moleculelist.h
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color=
> Scanning dependencies of target python-module
> make[3]: Leaving directory `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build
> make[3]: Entering directory `/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 76%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/engine.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/engine.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 77
> [ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/plugin.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/plugin.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/std_vector.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/primitive.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/primitive.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/painter.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/painter.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/bond.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/bond.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 77%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/painterdevice.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 78
> [ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/meshgenerator.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/navigate.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/navigate.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/glwidget.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/swig.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/swig.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/color.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/color.cpp
> /usr/bin/cmake -E cmake_progress_report /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/CMakeFiles 
> [ 78%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o
> cd /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python && /usr/bin/g++   -Dpython_module_EXPORTS -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DENABLE_PYTHON -DENABLE_GLSL -DQT_DLL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_NO_DEBUG -g -O2 -g -Wall -O2 -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/include -I/usr/include/qt4 -I/usr/include/qt4/QtOpenGL -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtNetwork -I/usr/include/qt4/QtCore -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.5 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/include -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7 -I/build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/obj-x86_64-linux-gnu/libavogadro/src/python -I/usr/lib/python2.5/site-packages/numpy/core/include   -o CMakeFiles/python-module.dir/sip.cpp.o -c /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QClass_converters<T>::QClass_to_PyQt::convert(const T&)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:142: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QClass_converters<T>::QClass_to_PyQt::convert(T*)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:166: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp: In static member function 'static void* QClass_converters<T>::QClass_from_PyQt(PyObject*)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:186: error: 'const struct sipAPIDef' has no member named 'api_wrapper_check'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:194: error: 'const struct sipAPIDef' has no member named 'api_transfer'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:204: error: 'struct sipWrapper' has no member named 'u'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp: In static member function 'static PyObject* QList_QAction_to_python_list_PyQt::convert(const QList<QAction*>&)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:244: error: 'const struct _sipAPIDef' has no member named 'api_convert_from_instance'
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp: In function 'PyObject* toPyQt(T*)':
> /build/user-avogadro_0.9.7-1-amd64-gz_5Z6/avogadro-0.9.7/libavogadro/src/python/sip.cpp:378: error: 'const struct sipAPIDef' has no member named 'api_convert_from_instance'
> make[3]: *** [libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2009/10/16/avogadro_0.9.7-1_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |