[Debichem-devel] Bug#614527: apbs: FTBFS: dpkg-shlibdeps: error: couldn't find library libmpi_f77.so.0 needed by debian/apbs/usr/bin/apbs (ELF format: 'elf64-x86-64'; RPATH: '').

[Lucas Nussbaum]

Source: apbs
Version: 1.2.1b-1
Severity: serious
Tags: wheezy sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20110221 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[3]: Entering directory `/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/bin'
> test -z "/usr/lib" || /bin/mkdir -p "/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/lib"
>  /bin/bash ../libtool --mode=install /usr/bin/install -c  'libapbsmainroutines.la' '/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/lib/libapbsmainroutines.la'
> libtool: install: /usr/bin/install -c .libs/libapbsmainroutines.lai /build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/lib/libapbsmainroutines.la
> libtool: install: /usr/bin/install -c .libs/libapbsmainroutines.a /build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/lib/libapbsmainroutines.a
> libtool: install: chmod 644 /build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/lib/libapbsmainroutines.a
> libtool: install: ranlib /build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/lib/libapbsmainroutines.a
> libtool: install: warning: remember to run `libtool --finish /usr/lib'
> test -z "/usr/bin" || /bin/mkdir -p "/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/bin"
>   /bin/bash ../libtool --mode=install /usr/bin/install -c 'apbs' '/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/bin/apbs'
> libtool: install: /usr/bin/install -c apbs /build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/bin/apbs
> cp -p /build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/bin/ApbsClient.py /usr/bin
> cp: cannot create regular file `/usr/bin/ApbsClient.py': Permission denied
> make[3]: [install-data-local] Error 1 (ignored)
> chmod 755 /usr/bin/ApbsClient.py
> chmod: cannot access `/usr/bin/ApbsClient.py': No such file or directory
> make[3]: [install-data-local] Error 1 (ignored)
> rm -f /usr/bin/wsdl2py 
> test -z "/usr/include/apbs" || /bin/mkdir -p "/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/include/apbs"
>  /usr/bin/install -c -m 644 'routines.h' '/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/debian/tmp/usr/include/apbs/routines.h'
> make[3]: Leaving directory `/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/bin'
> make[2]: Leaving directory `/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/bin'
> make[1]: Leaving directory `/build/user-apbs_1.2.1b-1-amd64-yfzjBw/apbs-1.2.1b/bin'
> touch debian/stamp-makefile-install
> Adding cdbs dependencies to debian/apbs.substvars
> dh_installdirs -papbs 
> dh_installdocs -papbs ./README ./NEWS ./AUTHORS 
> dh_installexamples -papbs 
> dh_installman -papbs debian/apbs.1 
> dh_installinfo -papbs  
> dh_installmenu -papbs 
> dh_installcron -papbs 
> dh_installinit -papbs  
> dh_installdebconf -papbs 
> dh_installemacsen -papbs   
> dh_installcatalogs -papbs 
> dh_installpam -papbs 
> dh_installlogrotate -papbs 
> dh_installlogcheck -papbs 
> dh_installchangelogs -papbs  ./ChangeLog 
> dh_installudev -papbs 
> dh_lintian -papbs 
> dh_bugfiles -papbs 
> dh_install -papbs  
> dh_link -papbs  
> dh_installmime -papbs 
> -./usr/include/apbs/routines.h
> -./usr/lib/libapbsmainroutines.a
> -./usr/lib/libapbsmainroutines.la
> dh_strip -papbs  
> dh_compress -papbs  
> dh_fixperms -papbs  
> dh_makeshlibs -papbs  
> dh_installdeb -papbs 
> dh_perl -papbs 
> dh_shlibdeps -papbs    
> dpkg-shlibdeps: error: couldn't find library libmpi_f77.so.0 needed by debian/apbs/usr/bin/apbs (ELF format: 'elf64-x86-64'; RPATH: '').
> Note: libraries are not searched in other binary packages that do not have any shlibs or symbols file.
> To help dpkg-shlibdeps find private libraries, you might need to set LD_LIBRARY_PATH.
> dh_shlibdeps: dpkg-shlibdeps -Tdebian/apbs.substvars debian/apbs/usr/bin/apbs returned exit code 2
> make: *** [binary-predeb-IMPL/apbs] Error 9

The full build log is available from:
   http://people.debian.org/~lucas/logs/2011/02/21/apbs_1.2.1b-1_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |