From sramacher at debian.org Fri Aug 1 18:10:01 2014 From: sramacher at debian.org (Sebastian Ramacher) Date: Fri, 1 Aug 2014 20:10:01 +0200 Subject: [Debichem-devel] Bug#756795: espresso: FTBFS on armel Message-ID: <20140801181001.GA15387@ramacher.at> Source: espresso Version: 5.1+dfsg-1 Severity: serious Justification: fails to build from source (but built successfully in the past) espresso failed to build on armel with: | Checking dft1...passed | Checking dft10...passed | Checking dft11...passed | Checking dft2...passed | Checking dft3...passed | Checking dft4...passed | Checking dft5...passed | Checking dft6...passed | Checking dft7...passed | Checking dft8...discrepancy in total energy detected | Reference: -15.653555, You got: -15.653554 | Checking dft9...passed | Checking dipole...passed | E: Caught signal ?Terminated?: terminating immediately | make: *** wait: No child processes. Stop. Full build log is available from https://buildd.debian.org/status/fetch.php?pkg=espresso&arch=armel&ver=5.1+dfsg-1&stamp=1406271521. Please take a look Cheers -- Sebastian Ramacher -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 819 bytes Desc: Digital signature URL: From sramacher at debian.org Fri Aug 1 18:11:05 2014 From: sramacher at debian.org (Sebastian Ramacher) Date: Fri, 1 Aug 2014 20:11:05 +0200 Subject: [Debichem-devel] Bug#756796: espresso: FTBFS on s390x Message-ID: <20140801181105.GA15682@ramacher.at> Source: espresso Version: 5.1+dfsg-1 Severity: serious Justification: fails to build from source (but built successfully in the past) espresso failed to build on s390x with: | mpif90 -g -pthread -o pw.x \ | pwscf.o libpw.a ../../Modules/libqemod.a ../../flib/ptools.a ../../flib/flib.a ../../clib/clib.a ../../iotk/src/libiotk.a -lscalapack-mpich2 -lblacs-mpich2 -lblacsF77init-mpich2 -llapack -lblas -lfftw3 -lblas | /usr/bin/ld: cannot find -lscalapack-mpich2 | /usr/bin/ld: cannot find -lblacs-mpich2 | /usr/bin/ld: cannot find -lblacsF77init-mpich2 | collect2: error: ld returned 1 exit status | make[4]: *** [pw.x] Error 1 Full build logs are available from https://buildd.debian.org/status/fetch.php?pkg=espresso&arch=s390x&ver=5.1+dfsg-1&stamp=1406242584. Please take a look. Cheers -- Sebastian Ramacher -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 819 bytes Desc: Digital signature URL: From kibi at debian.org Sun Aug 3 11:53:00 2014 From: kibi at debian.org (Cyril Brulebois) Date: Sun, 03 Aug 2014 13:53:00 +0200 Subject: [Debichem-devel] Bug#756908: ergo: FTBFS on mips, mipsel, powerpc, s390x: test suite failures Message-ID: <20140803115300.32072.82234.reportbug@arya.home.mraw.org> Source: ergo Version: 3.4.0-1 Severity: serious Justification: FTBFS Hi, everything is in the subject, full summary: https://buildd.debian.org/status/package.php?p=ergo&suite=sid Direct links to failing build logs: https://buildd.debian.org/status/fetch.php?pkg=ergo&arch=mips&ver=3.4.0-1&stamp=1406494180 https://buildd.debian.org/status/fetch.php?pkg=ergo&arch=mipsel&ver=3.4.0-1&stamp=1406450302 https://buildd.debian.org/status/fetch.php?pkg=ergo&arch=powerpc&ver=3.4.0-1&stamp=1406399761 https://buildd.debian.org/status/fetch.php?pkg=ergo&arch=s390x&ver=3.4.0-1&stamp=1406400721 Mraw, KiBi. From ftpmaster at ftp-master.debian.org Mon Aug 4 12:10:58 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 04 Aug 2014 12:10:58 +0000 Subject: [Debichem-devel] Processing of openbabel_2.3.2+dfsg-1.2_amd64.changes Message-ID: openbabel_2.3.2+dfsg-1.2_amd64.changes uploaded successfully to localhost along with the files: openbabel_2.3.2+dfsg-1.2_amd64.deb openbabel-gui_2.3.2+dfsg-1.2_amd64.deb libopenbabel-dev_2.3.2+dfsg-1.2_amd64.deb libopenbabel4_2.3.2+dfsg-1.2_amd64.deb libopenbabel-doc_2.3.2+dfsg-1.2_all.deb python-openbabel_2.3.2+dfsg-1.2_amd64.deb libchemistry-openbabel-perl_2.3.2+dfsg-1.2_amd64.deb openbabel_2.3.2+dfsg-1.2.dsc openbabel_2.3.2+dfsg-1.2.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From owner at bugs.debian.org Mon Aug 4 12:12:06 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 04 Aug 2014 12:12:06 +0000 Subject: [Debichem-devel] Processed: openbabel: diff for NMU version 2.3.2+dfsg-1.2 References: <20140804120927.GA10359@pc1.creditreform.bg> Message-ID: Processing commands for control at bugs.debian.org: > tags 752800 + pending Bug #752800 [openbabel] openbabel: hardcodes /usr/lib/perl5 Added tag(s) pending. > thanks Stopping processing here. Please contact me if you need assistance. -- 752800: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752800 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From dmn at debian.org Mon Aug 4 12:09:41 2014 From: dmn at debian.org (Damyan Ivanov) Date: Mon, 4 Aug 2014 15:09:41 +0300 Subject: [Debichem-devel] Bug#752800: openbabel: diff for NMU version 2.3.2+dfsg-1.2 Message-ID: <20140804120927.GA10359@pc1.creditreform.bg> tags 752800 + pending thanks Dear maintainer, I've uploaded the NMU for openbabel prepared by gregor (versioned as 2.3.2+dfsg-1.2) to DELAYED/5. Please feel free to tell me if I should delay it longer. Regards, dam -------------- next part -------------- A non-text attachment was scrubbed... Name: openbabel-2.3.2+dfsg-1.2-nmu.diff Type: text/x-diff Size: 1569 bytes Desc: not available URL: From owner at bugs.debian.org Tue Aug 5 08:09:36 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 05 Aug 2014 08:09:36 +0000 Subject: [Debichem-devel] Processed: Change of e-mail address References: <53E09082.50506@laposte.net> Message-ID: Processing commands for control at bugs.debian.org: > submitter 677093 ! Bug #677093 [php5-suhosin] php5-suhosin: preinst failure Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 709641 ! Bug #709641 [libaudiomask-dev] libaudiomask-dev: symlink pointing to wrong location Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 575519 ! Bug #575519 [coriander] coriander: crashes on every invocation Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 650253 ! Bug #650253 [libview-dev] libview-dev: variable 'prefix' not defined in '/usr/lib/pkgconfig/libview.pc' Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 110516 ! Bug #110516 [adduser] adduser: bad interaction with NIS Changed Bug submitter to 'Laurent Bonnaud ' from 'laurent bonnaud ' > submitter 176149 ! Bug #176149 [ttf-xfree86-nonfree] ttf-xfree86-nonfree: defoma errors Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 213562 ! Bug #213562 [fakeroot] cannot build coreutils in fakeroot Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent.Bonnaud at inpg.fr' > submitter 227938 ! Bug #227938 [prelink] prelink: bug on some binary Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent.Bonnaud at inpg.fr' > submitter 237029 ! Bug #237029 [prelink] gcc-snapshot: cannot prelink several java-related binaries Ignoring request to change the submitter of bug#237029 to the same value > submitter 277466 ! Bug #277466 [net-tools] net-tools: netstat -ap confused by '/' in process command line Bug #251770 [net-tools] net-tools: netstat -p shows incorrect program name for dictd Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 287575 ! Bug #287575 [libc-client2002edebian] libc-client2002edebian: /usr/lib/libc-client.so.2002edebian has undefined non-weak symbols Warning: Unknown package 'libc-client2002edebian' Ignoring request to change the submitter of bug#287575 to the same value Warning: Unknown package 'libc-client2002edebian' > submitter 303222 ! Bug #303222 [ldp-docbook-xsl] ldp-docbook-xsl: error in doc-base file Ignoring request to change the submitter of bug#303222 to the same value > submitter 310445 ! Bug #310445 [libc6] please document that static linking is unsupported Ignoring request to change the submitter of bug#310445 to the same value > submitter 379913 ! Bug #379913 [grass-doc] grass-doc: whatis parse errors in manpages Ignoring request to change the submitter of bug#379913 to the same value > submitter 573449 ! Bug #573449 [mpich-mpd-bin] mpich-mpd-bin: /usr/bin/tstmachines.mpich-mpd is a dangling Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 581311 ! Bug #581311 [tracker-miner-fs] tracker-miner-fs: 32 bits binary uses unknown ioctl on 64 bits kernel Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 647625 ! Bug #647625 [haskell98-report] haskell98-report: error in postscript file Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 647628 ! Bug #647628 [pstotext] pstotext: internal error 202 Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 666914 ! Bug #666914 [python-zope.interface] /usr/lib/python2.7/dist-packages/zope/__init__.py:3: UserWarning: Module dap was already imported from None Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 678976 ! Bug #678976 [oar-server] oar-server: Can't call method "prepare" on an undefined value at /usr/share/perl5/OAR/IO.pm line 6645. Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 689850 ! Bug #689850 [libcoin60-doc] libcoin60-doc: no whatis info in manpages Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 701180 ! Bug #701180 [dhelp] "gz-extract does not handle spaces in file names" Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 701198 ! Bug #701198 [egenix-mx-base] egenix-mx-base: problems in PDF files Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 709346 ! Bug #709346 [lsat] lsat: incorrect use of grep Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 709362 ! Bug #709362 [fonts-bpg-georgian] fonts-bpg-georgian: Fontconfig warnings in 70-fonts-bpg-georgian.conf: bad alias Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 731944 ! Bug #731944 [checksecurity] checksecurity: find: invalid mode ?+06000? Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 90714 ! Bug #90714 [x11-utils] xbase-clients: [xlsfonts] (xlsfonts | wc -l) != (xlsfonts | sort | uniq | wc -l) Changed Bug submitter to 'Laurent Bonnaud ' from 'laurent bonnaud ' > submitter 287643 ! Bug #287643 [libpetsc2.3.3] libpetsc2.2.0: /usr/lib/libpetscdm.so.2.2.0 has undefined non-weak symbols Warning: Unknown package 'libpetsc2.3.3' Ignoring request to change the submitter of bug#287643 to the same value Warning: Unknown package 'libpetsc2.3.3' > submitter 379892 ! Bug #379892 [htdig] default config crawls the htdig.org website Ignoring request to change the submitter of bug#379892 to the same value > submitter 585545 ! Bug #585545 [ne-doc] ne-doc: error messages from dhelp while indexing Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 342720 ! Bug #342720 [texmacs] texmacs: errors and warnings during font generation Bug #346204 [texmacs] Missing font files Ignoring request to change the submitter of bug#342720 to the same value > submitter 70444 ! Bug #70444 [atsar] astar: FTP and HTTP stats with a config file Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 149025 ! Bug #149025 [apt] apt-listchanges: display nicer message on abort Changed Bug submitter to 'Laurent Bonnaud ' from '"Laurent Bonnaud" ' > submitter 157748 ! Bug #157748 [evolution] evolution: hint about 2vcard in README.Debian Changed Bug submitter to 'Laurent Bonnaud ' from '"Laurent Bonnaud" ' > submitter 168927 ! Bug #168927 [wv] wv: generation of PNG images or JPEG with adjustable compression Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 276411 ! Bug #276411 [gcompris-data] gcompris: please provide doc-base entry for french doc Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 316341 ! Bug #316341 [apt] apt-get manpage should mention apt-key Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent.Bonnaud at inpg.fr' > submitter 324852 ! Bug #324852 [util-linux] util-linux: mkswap manpage should suggest appropriate permissions for swapfiles Ignoring request to change the submitter of bug#324852 to the same value > submitter 326081 ! Bug #326081 [usbmount] usbmount: use UID of logged user for mounting Ignoring request to change the submitter of bug#326081 to the same value > submitter 422558 ! Bug #422558 [scanssh] scanssh: please update libpcap dependency Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 477136 ! Bug #477136 [emacsen-common] emacsen-common: Deep recursion on subroutine "main::generate_relevant_tsort_dependencies_internals" Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 214715 ! Bug #214715 [prelink] libc6-i686: cannot prelink ooffice because of dependency cycle Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent.Bonnaud at inpg.fr' > submitter 221613 ! Bug #221613 [libgcrypt11] libgnutls7: please provide processor optimized versions Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent.Bonnaud at inpg.fr' > submitter 134880 ! Bug #134880 [rxvt] rxvt: pasting accentuated characters from rxvt to nedit does not work Bug #150257 [rxvt] rxvt in cut&paste from other windows ignores characters in iso-8859-2 Bug #157877 [rxvt] rxvt: Weird accent inter-rxvt pasting problem Changed Bug submitter to 'Laurent Bonnaud ' from 'laurent bonnaud ' > submitter 159932 ! Bug #159932 [xfig] xfig: dead keys do not work in text input Changed Bug submitter to 'Laurent Bonnaud ' from '"Laurent Bonnaud" ' > submitter 160384 ! Bug #160384 [wv] wvHtml produces invalid HTML 4.0 Changed Bug submitter to 'Laurent Bonnaud ' from '"Laurent Bonnaud" ' > submitter 339356 ! Bug #339356 [gnat-4.6] [Fixed in 4.8] Assert_Failure atree.adb:794 on invalid code (mixture of protected object and accept of entry family) Ignoring request to change the submitter of bug#339356 to the same value > submitter 420795 ! Bug #420795 [chemical-mime-data] chemical-mime-data: Unknown media type in type 'chemical/x-*' Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 257676 ! Bug #257676 [screen] cannot start screen from a su session Bug #133807 [screen] screen user must own pty (breaks with 'su') Bug #583644 [screen] screen: not working under sux Bug #610839 [screen] screen: "Cannot open your terminal /dev/pts/2 - please check" Bug #637925 [screen] screen: not working after su Ignoring request to change the submitter of bug#257676 to the same value > submitter 345987 ! Bug #345987 {Done: Peter S Galbraith } [mh-e] postinst script blocks if some Recommends are not yet configured Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 262890 ! Bug #262890 {Done: Camm Maguire } [axiom] axiom: cannot use prelink on AXIOMsys binary Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > submitter 262891 ! Bug #262891 {Done: Camm Maguire } [maxima] cannot use prelink on maxima binary Changed Bug submitter to 'Laurent Bonnaud ' from 'Laurent Bonnaud ' > thanks Stopping processing here. Please contact me if you need assistance. -- 110516: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=110516 133807: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=133807 134880: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=134880 149025: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=149025 150257: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=150257 157748: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=157748 157877: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=157877 159932: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=159932 160384: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=160384 168927: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=168927 176149: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=176149 213562: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=213562 214715: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=214715 221613: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=221613 227938: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=227938 237029: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=237029 251770: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=251770 257676: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=257676 262890: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=262890 262891: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=262891 276411: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=276411 277466: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=277466 287575: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=287575 287643: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=287643 303222: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=303222 310445: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=310445 316341: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=316341 324852: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=324852 326081: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=326081 339356: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=339356 342720: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=342720 345987: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=345987 346204: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=346204 379892: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=379892 379913: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=379913 420795: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=420795 422558: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=422558 477136: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=477136 573449: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=573449 575519: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=575519 581311: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=581311 583644: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=583644 585545: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=585545 610839: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=610839 637925: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=637925 647625: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=647625 647628: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=647628 650253: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=650253 666914: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=666914 677093: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=677093 678976: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=678976 689850: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=689850 701180: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=701180 701198: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=701198 70444: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=70444 709346: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=709346 709362: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=709362 709641: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=709641 731944: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=731944 90714: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=90714 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From ftpmaster at ftp-master.debian.org Sat Aug 9 12:17:07 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sat, 09 Aug 2014 12:17:07 +0000 Subject: [Debichem-devel] Processing of molds_0.3.0-3.1_i386.changes Message-ID: molds_0.3.0-3.1_i386.changes uploaded successfully to localhost along with the files: molds_0.3.0-3.1_i386.deb molds_0.3.0-3.1.dsc molds_0.3.0-3.1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Sat Aug 9 12:19:29 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sat, 09 Aug 2014 12:19:29 +0000 Subject: [Debichem-devel] molds_0.3.0-3.1_i386.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Sat, 09 Aug 2014 14:06:55 +0200 Source: molds Binary: molds Architecture: source i386 Version: 0.3.0-3.1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Matthias Klose Description: molds - Semi-empirical electronic structure and molecular dynamics Closes: 746884 Changes: molds (0.3.0-3.1) unstable; urgency=medium . * Non-maintainer upload. * Fix build failure with GCC 4.9 (Katsuhiko Nishimra). Closes: #746884. Checksums-Sha1: 3085d43a7327d07abf3b2c1c7b7bc8bfcd79d983 1414 molds_0.3.0-3.1.dsc 8dc08885d105e512751853d9f7889f3089c731ba 5100 molds_0.3.0-3.1.debian.tar.xz 23bfbff7d38d39ba2e634ca1032600767043d2e2 341518 molds_0.3.0-3.1_i386.deb Checksums-Sha256: c30010aa66996cb38cb767c19d1bcc01d65c7dd7d8262ae0f6b019a3c0d1a033 1414 molds_0.3.0-3.1.dsc 993e6d6951ad41a32ad1fcaba5dca1371c6a8f240f5510bb4eab5de8ea1f2903 5100 molds_0.3.0-3.1.debian.tar.xz dba57ccfcc4d2d7ad660b0bafd4a6c80f8f90110511a5ba192db174632f7792a 341518 molds_0.3.0-3.1_i386.deb Files: d8f1ae344fc02958249c7233b4e4be3a 341518 science optional molds_0.3.0-3.1_i386.deb ab817a32e597a7bd5520031c998bf517 1414 science optional molds_0.3.0-3.1.dsc 1c5d54f8c6c310f45c9f4a8477bc494b 5100 science optional molds_0.3.0-3.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iEYEARECAAYFAlPmENUACgkQStlRaw+TLJxj+QCbB2QcgpLN6E15QR20jbWLCKL/ 8McAn090iMI3RbdB35DLWjTm3/m7fGs/ =Wu1E -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Sat Aug 9 12:21:14 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sat, 09 Aug 2014 12:21:14 +0000 Subject: [Debichem-devel] Bug#746884: marked as done (molds: ftbfs with GCC-4.9) References: Message-ID: Your message dated Sat, 09 Aug 2014 12:19:29 +0000 with message-id and subject line Bug#746884: fixed in molds 0.3.0-3.1 has caused the Debian Bug report #746884, regarding molds: ftbfs with GCC-4.9 to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 746884: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=746884 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Matthias Klose Subject: molds: ftbfs with GCC-4.9 Date: Sun, 04 May 2014 00:22:10 +0000 Size: 8032 URL: -------------- next part -------------- An embedded message was scrubbed... From: Matthias Klose Subject: Bug#746884: fixed in molds 0.3.0-3.1 Date: Sat, 09 Aug 2014 12:19:29 +0000 Size: 4458 URL: From ftpmaster at ftp-master.debian.org Sat Aug 9 12:34:06 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sat, 09 Aug 2014 12:34:06 +0000 Subject: [Debichem-devel] openbabel_2.3.2+dfsg-1.2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 04 Aug 2014 11:31:02 +0000 Source: openbabel Binary: openbabel openbabel-gui libopenbabel-dev libopenbabel4 libopenbabel-doc python-openbabel libchemistry-openbabel-perl Architecture: source amd64 all Version: 2.3.2+dfsg-1.2 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Damyan Ivanov Description: libchemistry-openbabel-perl - Chemical toolbox library (perl bindings) libopenbabel-dev - Chemical toolbox library (development files) libopenbabel-doc - Chemical toolbox library (documentation) libopenbabel4 - Chemical toolbox library openbabel - Chemical toolbox utilities (cli) openbabel-gui - Chemical toolbox utilities (graphical user interface) python-openbabel - Chemical toolbox library (python bindings) Closes: 752800 Changes: openbabel (2.3.2+dfsg-1.2) unstable; urgency=medium . [ gregor herrmann ] * Non-maintainer upload. * Fix "hardcodes /usr/lib/perl5": - remove debian/libchemistry-openbabel-perl.install - pass perl directory to dh_install in debian/rules, expanded from $Config{vendorarch} (Closes: #752800) Checksums-Sha1: 33af60cc9866b5be396939bb7be6357917e424a4 2530 openbabel_2.3.2+dfsg-1.2.dsc 7aab83a93ba8450e80ceffdf69f9dbbede8d6fd3 13864 openbabel_2.3.2+dfsg-1.2.debian.tar.xz 0802f2957d4bcf2ab881c3c406887c4653f76639 250298 openbabel_2.3.2+dfsg-1.2_amd64.deb 3de811c834e545d4ca1a56014ea5db422dc9237c 221668 openbabel-gui_2.3.2+dfsg-1.2_amd64.deb 496ac347795f22ef903d177104687ae9d8246096 314108 libopenbabel-dev_2.3.2+dfsg-1.2_amd64.deb 98f147e6d446ca977020671d75c49d14ae403336 2899080 libopenbabel4_2.3.2+dfsg-1.2_amd64.deb 3b8a6718d85dcad3aa1e96460d0feb11d3f27487 6057438 libopenbabel-doc_2.3.2+dfsg-1.2_all.deb 9e24a1f15efe4c6c2232d59de46c619fc3b0f281 794870 python-openbabel_2.3.2+dfsg-1.2_amd64.deb b985752de705e7cbd2c27cee22f5e6fddfcc21e0 809442 libchemistry-openbabel-perl_2.3.2+dfsg-1.2_amd64.deb Checksums-Sha256: 99ed265932314196e7930827123fe323dd73bd057531bf8d7e67a964efbb7732 2530 openbabel_2.3.2+dfsg-1.2.dsc 0b1a33e3e3cc51278a0c363e6931e4d4dc0890adaacb642ed08c9f72504374ae 13864 openbabel_2.3.2+dfsg-1.2.debian.tar.xz a8ed015aa877da1a60d98fe31d96697075a2e9191183939db7e0718d1331b813 250298 openbabel_2.3.2+dfsg-1.2_amd64.deb eccea9d9cc379a3e4be5b78f7c211694834252b8640326f5fc3e9c9b2b51bdac 221668 openbabel-gui_2.3.2+dfsg-1.2_amd64.deb 87c892dae62f03221d61301baa48bcf55c6822c6fb78bf9099dc8125a8e39b11 314108 libopenbabel-dev_2.3.2+dfsg-1.2_amd64.deb e0bbc59d500c76b69969f994f5370472e1e2ec0e8837051d484d8321174af80a 2899080 libopenbabel4_2.3.2+dfsg-1.2_amd64.deb e1d2a4fe9d86968190a882d078e535a49add2a71738361ea34f64dc1bac4cf8f 6057438 libopenbabel-doc_2.3.2+dfsg-1.2_all.deb 4c4daed01ee51dc9da10814b300194da2e40c5126e20da6249e5959c146a0907 794870 python-openbabel_2.3.2+dfsg-1.2_amd64.deb 4b32f5ecadef57be743a8f80b04c64ca0daae05d780d75fda8117020d1650f77 809442 libchemistry-openbabel-perl_2.3.2+dfsg-1.2_amd64.deb Files: ce1c66bebc4a7f6d6bccdad1357a16cf 250298 science optional openbabel_2.3.2+dfsg-1.2_amd64.deb 8e23e4ddaacf107b6787f78857748c3b 221668 science optional openbabel-gui_2.3.2+dfsg-1.2_amd64.deb fcc9db4c41ece1d895923eecd8302f01 314108 libdevel optional libopenbabel-dev_2.3.2+dfsg-1.2_amd64.deb 8259f67b55bf2eda04fd57472a9233fe 2899080 libs optional libopenbabel4_2.3.2+dfsg-1.2_amd64.deb 59a0a0dcb000c2aff73e70c6351c1196 6057438 doc optional libopenbabel-doc_2.3.2+dfsg-1.2_all.deb 6092eb019770aca55840c045c1cf6820 794870 python optional python-openbabel_2.3.2+dfsg-1.2_amd64.deb 645763ff6559c9bd81d4891538b78b16 809442 perl optional libchemistry-openbabel-perl_2.3.2+dfsg-1.2_amd64.deb 5d2978c71e01e28619da059e35690f71 2530 science optional openbabel_2.3.2+dfsg-1.2.dsc 3310c4a6f3516273ef4c7dd29a234679 13864 science optional openbabel_2.3.2+dfsg-1.2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT33drAAoJENu+nU2Z0qAEYL4P/3oUVMvg/UxwqavwminrAMEe lBL4HEq7I4doJKozOqeCglHQyLbMrkNo40ALXcTcv/BJYLTfDyxAkC0fxCElQt+S p8HF4R1L8HkVnn878Q7NrN9AxhfKpRPZm6WGhjYfKcMidW82AeR3IJ/8G9qRPUJ4 Is1eu4z28bd1JWKnRfeIRQRTydgFjhjEJSr41K52i6S/I84AdvpoErb85cNe0C48 1tAf28Shf8h7Rirs0mJd+rzgj8h3/6/Gc7EEt4zSO7OqTTb+YfiWIWvG/TNH+Xgw zjkrWaW/YctmXzfwtHNtaRTFF6P3Wucrx8C5zp57GjtnlzT6C1eIuLNkMTEr09E8 /5vrkhwO7PKBVYP2m15MvHCiL+rRWcwNNLDbkj+FV+HHZDp6UYhsvtuUckr5kGh2 nEIgGTmld0mgWhGRcZNG15v/fHAoDQ52Y+2/bX8SBfmOOA++fHF5p/Vp3IxfkG9K wJKdImuGYcQfzRUJx5ROJD3P6wCH0aHTwKzXbM+Bk+tY0thlOa+iOBP2Azb3RYzv IeCRsbQB0R2gtz+2z5dHhmlPSetI7BJIOCsT2/gmbPaPDXL0tgozFBVY/9TZuuQs SwPp2QcQ954wKmsBdxX1wB0dGgvwQeFBBpMc8m81G45kTx1zGXCpzMfGOulQaVuM XJZ/oGSXf0bhfHbQ4Coe =gHAy -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Sat Aug 9 12:36:10 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sat, 09 Aug 2014 12:36:10 +0000 Subject: [Debichem-devel] Bug#752800: marked as done (openbabel: hardcodes /usr/lib/perl5) References: <20140626171831.GC7758@estella.local.invalid> Message-ID: Your message dated Sat, 09 Aug 2014 12:34:06 +0000 with message-id and subject line Bug#752800: fixed in openbabel 2.3.2+dfsg-1.2 has caused the Debian Bug report #752800, regarding openbabel: hardcodes /usr/lib/perl5 to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 752800: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752800 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Niko Tyni Subject: openbabel: hardcodes /usr/lib/perl5 Date: Thu, 26 Jun 2014 20:18:31 +0300 Size: 3270 URL: -------------- next part -------------- An embedded message was scrubbed... From: Damyan Ivanov Subject: Bug#752800: fixed in openbabel 2.3.2+dfsg-1.2 Date: Sat, 09 Aug 2014 12:34:06 +0000 Size: 7712 URL: From owner at bugs.debian.org Sat Aug 9 13:15:20 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sat, 09 Aug 2014 13:15:20 +0000 Subject: [Debichem-devel] Processed: raise severity of issues fo rpackages build-depending on GCC 4.7 References: <53E61E50.5000104@debian.org> Message-ID: Processing commands for control at bugs.debian.org: > severity 747998 serious Bug #747998 [gcc-msp430] gcc-msp430: non-standard gcc/g++ used for build (gcc-4.7) Severity set to 'serious' from 'important' > severity 748004 serious Bug #748004 [libreoffice] libreoffice: non-standard cpp used for build (cpp-4.7) Bug #753373 [libreoffice] libreoffice: Please migrate away from gcc-4.7 in Jessie if possible Severity set to 'serious' from 'important' Severity set to 'serious' from 'important' > severity 748007 serious Bug #748007 [nwchem] nwchem: non-standard gcc/g++ used for build (gcc-4.7) Severity set to 'serious' from 'important' > thanks Stopping processing here. Please contact me if you need assistance. -- 747998: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=747998 748004: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748004 748007: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748007 753373: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=753373 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From ntyni at debian.org Mon Aug 11 05:28:17 2014 From: ntyni at debian.org (Niko Tyni) Date: Mon, 11 Aug 2014 08:28:17 +0300 Subject: [Debichem-devel] Bug#752800: closed by Damyan Ivanov (Bug#752800: fixed in openbabel 2.3.2+dfsg-1.2) In-Reply-To: References: <20140626171831.GC7758@estella.local.invalid> Message-ID: <20140811052817.GA17322@estella.local.invalid> found 752800 2.3.2+dfsg-1.2 thanks On Sat, Aug 09, 2014 at 12:36:10PM +0000, Debian Bug Tracking System wrote: > Changes: > openbabel (2.3.2+dfsg-1.2) unstable; urgency=medium > . > [ gregor herrmann ] > * Non-maintainer upload. > * Fix "hardcodes /usr/lib/perl5": > - remove debian/libchemistry-openbabel-perl.install > - pass perl directory to dh_install in debian/rules, > expanded from $Config{vendorarch} > (Closes: #752800) Something went wrong with this. debian/libchemistry-openbabel-perl.install is still in the package as of 2.3.2+dfsg-1.2, and the build is still failing with Perl 5.20. -- Niko Tyni ntyni at debian.org From owner at bugs.debian.org Mon Aug 11 05:33:15 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 11 Aug 2014 05:33:15 +0000 Subject: [Debichem-devel] Processed: Re: Bug#752800 closed by Damyan Ivanov (Bug#752800: fixed in openbabel 2.3.2+dfsg-1.2) References: <20140811052817.GA17322@estella.local.invalid> Message-ID: Processing commands for control at bugs.debian.org: > found 752800 2.3.2+dfsg-1.2 Bug #752800 {Done: Damyan Ivanov } [openbabel] openbabel: hardcodes /usr/lib/perl5 Marked as found in versions openbabel/2.3.2+dfsg-1.2; no longer marked as fixed in versions openbabel/2.3.2+dfsg-1.2 and reopened. > thanks Stopping processing here. Please contact me if you need assistance. -- 752800: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752800 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From owner at bugs.debian.org Mon Aug 11 08:15:06 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 11 Aug 2014 08:15:06 +0000 Subject: [Debichem-devel] Processed: Re: Bug#752800 closed by Damyan Ivanov (Bug#752800: fixed in openbabel 2.3.2+dfsg-1.2) References: <20140811081221.GA28934@ktnx.net> <20140626171831.GC7758@estella.local.invalid> Message-ID: Processing control commands: > tags -1 pending Bug #752800 [openbabel] openbabel: hardcodes /usr/lib/perl5 Added tag(s) pending. -- 752800: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752800 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From dmn at debian.org Mon Aug 11 08:12:21 2014 From: dmn at debian.org (Damyan Ivanov) Date: Mon, 11 Aug 2014 11:12:21 +0300 Subject: [Debichem-devel] Bug#752800: closed by Damyan Ivanov (Bug#752800: fixed in openbabel 2.3.2+dfsg-1.2) In-Reply-To: <20140811052817.GA17322@estella.local.invalid> References: <20140626171831.GC7758@estella.local.invalid> <20140811052817.GA17322@estella.local.invalid> Message-ID: <20140811081221.GA28934@ktnx.net> Control: tags -1 pending -=| Niko Tyni, 11.08.2014 08:28:17 +0300 |=- > found 752800 2.3.2+dfsg-1.2 > thanks > > On Sat, Aug 09, 2014 at 12:36:10PM +0000, Debian Bug Tracking System wrote: > > > Changes: > > openbabel (2.3.2+dfsg-1.2) unstable; urgency=medium > > . > > [ gregor herrmann ] > > * Non-maintainer upload. > > * Fix "hardcodes /usr/lib/perl5": > > - remove debian/libchemistry-openbabel-perl.install > > - pass perl directory to dh_install in debian/rules, > > expanded from $Config{vendorarch} > > (Closes: #752800) > > Something went wrong with this. > > debian/libchemistry-openbabel-perl.install is still in the package as > of 2.3.2+dfsg-1.2, and the build is still failing with Perl 5.20. Ack. Not sure how I missed the failure as I am able to reproduce it locally. I am preparing a fixed NMU. Sorry for the disturbance. -- dam From ftpmaster at ftp-master.debian.org Mon Aug 11 08:38:17 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 11 Aug 2014 08:38:17 +0000 Subject: [Debichem-devel] Processing of openbabel_2.3.2+dfsg-1.3_allonly.changes Message-ID: openbabel_2.3.2+dfsg-1.3_allonly.changes uploaded successfully to localhost along with the files: libopenbabel-doc_2.3.2+dfsg-1.3_all.deb openbabel_2.3.2+dfsg-1.3.dsc openbabel_2.3.2+dfsg-1.3.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From dmn at debian.org Mon Aug 11 08:36:54 2014 From: dmn at debian.org (Damyan Ivanov) Date: Mon, 11 Aug 2014 11:36:54 +0300 Subject: [Debichem-devel] Bug#752800: openbabel: diff for NMU version 2.3.2+dfsg-1.3 Message-ID: <20140811083654.GA23160@pc1.creditreform.bg> Dear maintainer, I've prepared an NMU for openbabel (versioned as 2.3.2+dfsg-1.3) and uploaded it to unstable. It includes part of gregor's patch that I have missed somehow in -1.2. Sorry about that. Thanks to Niko Tyni for spotting the problem. Regards, dam -------------- next part -------------- A non-text attachment was scrubbed... Name: openbabel-2.3.2+dfsg-1.3-nmu.diff Type: text/x-diff Size: 1020 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Mon Aug 11 09:54:27 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 11 Aug 2014 09:54:27 +0000 Subject: [Debichem-devel] openbabel_2.3.2+dfsg-1.3_allonly.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 11 Aug 2014 08:07:30 +0000 Source: openbabel Binary: openbabel openbabel-gui libopenbabel-dev libopenbabel4 libopenbabel-doc python-openbabel libchemistry-openbabel-perl Architecture: source amd64 all Version: 2.3.2+dfsg-1.3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Damyan Ivanov Description: libchemistry-openbabel-perl - Chemical toolbox library (perl bindings) libopenbabel-dev - Chemical toolbox library (development files) libopenbabel-doc - Chemical toolbox library (documentation) libopenbabel4 - Chemical toolbox library openbabel - Chemical toolbox utilities (cli) openbabel-gui - Chemical toolbox utilities (graphical user interface) python-openbabel - Chemical toolbox library (python bindings) Closes: 752800 Changes: openbabel (2.3.2+dfsg-1.3) unstable; urgency=medium . * Non-maintainer upload * apply mistakenly omitted part of gregor's patch removing libchemistry-openbabel-perl.install. Really Closes: #752800. Thanks to Niko Tyni Checksums-Sha1: f6a77494f8d73a3c3238a3a32d3013328fbfdb6e 2530 openbabel_2.3.2+dfsg-1.3.dsc a4911ac26796dabc45917e99fb13e6241b585a4f 13884 openbabel_2.3.2+dfsg-1.3.debian.tar.xz a8325482bb640f7ff8bcc9c40df31ea88dc01a5e 6057464 libopenbabel-doc_2.3.2+dfsg-1.3_all.deb Checksums-Sha256: 7e15ad6a8c39aa429639807c542c254e5be77c10bb7e6a08b8e897fd2d42d9f2 2530 openbabel_2.3.2+dfsg-1.3.dsc 63183aa3fea50f5f0c0d3c7b0553e15c6627213f8c6ba554f4b0992a2f5efafe 13884 openbabel_2.3.2+dfsg-1.3.debian.tar.xz 812cfb6073319f0f70322cab8e95653a906572cc13048c9774a430a0c42c892d 6057464 libopenbabel-doc_2.3.2+dfsg-1.3_all.deb Files: 45fbfe8d54c3261e8da292fc037709b0 6057464 doc optional libopenbabel-doc_2.3.2+dfsg-1.3_all.deb 6c9b9ac7fbaf66926582be3514cd7a93 2530 science optional openbabel_2.3.2+dfsg-1.3.dsc 77ced8d9d38a2868f8116d3a0f659dd9 13884 science optional openbabel_2.3.2+dfsg-1.3.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT6IArAAoJENu+nU2Z0qAE5hgP/jsY9+1qQnVrn+0SLtT8QeXb stIZdn0xTWwQsQdlrtGH9Sm7TSDvGkWueXs1qN9qI/LTvbScFbWiBKk71fdzqWO6 MaR7HSbyV44pb3B5ibbG0aA4sqaK8tBoqfzwES6mEsk3iCpLR4s1xiE3XHBo9DzR 8RgWk4GvjYaNKxLMzkFcN5Mw9+2M/pOrwaHfEPE3lIv58SLIusr/yFBMRPmhUyvR KT0+de4+gvfa/NoYuCS6CxN63i93SolvcajmOR1ZRWPzl9hQwX1IEOVvWCUpjpis teWiRNI5ykMsRw2GkaU1Kf3TB15bKnmfxzbv68Ks250ybZG1iTMlG1+8I7wj1Haj gROBAh6osHL7+sLAZDGq7r3ubTzKxin/uJrilMvKunZH4+Pw6WaDE5PbN59tNZEY 5czZzFh7CQff+rB++emdk9eZRcupdSc09KLl7t0judmeeuLU2y3wbNmC/J5jqbHX KXHh35qq0zlmxRZDLgk5/KglfvQ6X+wv/yUTugJgRXqQ3RJw80M0wF/f/unoW8A4 7oFSK9jWG0kgkztsJrIKDqeMGyY6PLaRhVAW8RGNAk9i6Se2QV4P79eE2W5Sc1c5 6NajbL87SmQJDt59qhjWpYq8nivZ9b2mjENWuMJJOvaG0ER1wUpfIyk4NS0dwBze RoYyZtqLXDSKltDYPadF =RLgO -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Mon Aug 11 09:57:24 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 11 Aug 2014 09:57:24 +0000 Subject: [Debichem-devel] Bug#752800: marked as done (openbabel: hardcodes /usr/lib/perl5) References: <20140626171831.GC7758@estella.local.invalid> Message-ID: Your message dated Mon, 11 Aug 2014 09:54:27 +0000 with message-id and subject line Bug#752800: fixed in openbabel 2.3.2+dfsg-1.3 has caused the Debian Bug report #752800, regarding openbabel: hardcodes /usr/lib/perl5 to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 752800: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752800 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Niko Tyni Subject: openbabel: hardcodes /usr/lib/perl5 Date: Thu, 26 Jun 2014 20:18:31 +0300 Size: 3270 URL: -------------- next part -------------- An embedded message was scrubbed... From: Damyan Ivanov Subject: Bug#752800: fixed in openbabel 2.3.2+dfsg-1.3 Date: Mon, 11 Aug 2014 09:54:27 +0000 Size: 5800 URL: From dmn at debian.org Mon Aug 11 11:40:03 2014 From: dmn at debian.org (Damyan Ivanov) Date: Mon, 11 Aug 2014 14:40:03 +0300 Subject: [Debichem-devel] Bug#752800: openbabel: diff for NMU version 2.3.2+dfsg-1.3 In-Reply-To: <20140811083654.GA23160@pc1.creditreform.bg> References: <20140811083654.GA23160@pc1.creditreform.bg> Message-ID: <20140811114003.GB28934@ktnx.net> -=| Damyan Ivanov, 11.08.2014 11:36:54 +0300 |=- > I've prepared an NMU for openbabel (versioned as 2.3.2+dfsg-1.3) and > uploaded it to unstable. This failed to build on brahms/amd64 [1] with an IEC: [100%] Building CXX object scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o cd /?BUILDDIR?/openbabel-2.3.2+dfsg/build/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dbindings_perl_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -isystem /usr/lib/x86_64-linux-gnu/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -I/?BUILDDIR?/openbabel-2.3.2+dfsg/build/include -I/?BUILDDIR?/openbabel-2.3.2+dfsg/data -I/?BUILDDIR?/openbabel-2.3.2+dfsg/include -I/usr/include/eigen3 -I/usr/include/python2.7 -I/usr/lib/perl/5.18/CORE -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.3.2\"" -o CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c /?BUILDDIR?/openbabel-2.3.2+dfsg/scripts/perl/openbabel-perl.cpp c++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See for instructions. make[4]: *** [scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o] Error 4 [1] https://buildd.debian.org/status/fetch.php?pkg=openbabel&arch=amd64&ver=2.3.2+dfsg-1.3&stamp=1407752332 I have built the package several times on amd64 (in a pbuilder chroot) before uploading and I noticed that it takes some time to build, especially when it comes to perl/python bindings (the IEC above is when compiling the perl binding). Perhaps the buildd was constrained in RAM/swap? Buildd admins, can you re-schedule the build, possibly on another host? (I could also upload amd64-only binaries, but that would be kind of fixing the wrong problem). Cheers, dam From kurt at roeckx.be Mon Aug 11 16:47:23 2014 From: kurt at roeckx.be (Kurt Roeckx) Date: Mon, 11 Aug 2014 18:47:23 +0200 Subject: [Debichem-devel] Bug#752800: openbabel: diff for NMU version 2.3.2+dfsg-1.3 In-Reply-To: <20140811114003.GB28934@ktnx.net> References: <20140811083654.GA23160@pc1.creditreform.bg> <20140811114003.GB28934@ktnx.net> Message-ID: <20140811164723.GC16017@roeckx.be> On Mon, Aug 11, 2014 at 02:40:03PM +0300, Damyan Ivanov wrote: > -=| Damyan Ivanov, 11.08.2014 11:36:54 +0300 |=- > > I've prepared an NMU for openbabel (versioned as 2.3.2+dfsg-1.3) and > > uploaded it to unstable. > > This failed to build on brahms/amd64 [1] with an IEC: > > [100%] Building CXX object > scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o > cd /?BUILDDIR?/openbabel-2.3.2+dfsg/build/scripts && /usr/bin/c++ > -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER > -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 > -D_LARGE_FILES -D__WXGTK__ -Dbindings_perl_EXPORTS -g -O2 > -fstack-protector --param=ssp-buffer-size=4 -Wformat > -Werror=format-security -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC > -isystem > /usr/lib/x86_64-linux-gnu/wx/include/gtk2-unicode-release-2.8 > -isystem /usr/include/wx-2.8 > -I/?BUILDDIR?/openbabel-2.3.2+dfsg/build/include > -I/?BUILDDIR?/openbabel-2.3.2+dfsg/data > -I/?BUILDDIR?/openbabel-2.3.2+dfsg/include -I/usr/include/eigen3 > -I/usr/include/python2.7 -I/usr/lib/perl/5.18/CORE > -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.3.2\"" -o > CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c > /?BUILDDIR?/openbabel-2.3.2+dfsg/scripts/perl/openbabel-perl.cpp > c++: internal compiler error: Killed (program cc1plus) > Please submit a full bug report, > with preprocessed source if appropriate. > See for instructions. > make[4]: *** > [scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o] > Error 4 > > [1] https://buildd.debian.org/status/fetch.php?pkg=openbabel&arch=amd64&ver=2.3.2+dfsg-1.3&stamp=1407752332 > > I have built the package several times on amd64 (in a pbuilder chroot) > before uploading and I noticed that it takes some time to build, > especially when it comes to perl/python bindings (the IEC above is > when compiling the perl binding). Perhaps the buildd was constrained > in RAM/swap? It only has 2 GB of RAM + 0.5 GB of swap. I also found this in the log: [37098.081505] Out of memory: Kill process 19127 (cc1plus) score 447 or sacrifice child [37098.081508] Killed process 19127 (cc1plus) total-vm:1213428kB, anon-rss:1042196kB, file-rss:0kB > Buildd admins, can you re-schedule the build, possibly on another > host? Done, and I've excluded that package on brahms. Kurt From owner at bugs.debian.org Mon Aug 11 23:57:05 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 11 Aug 2014 23:57:05 +0000 Subject: [Debichem-devel] Processed: qutemol: patch for wx3.0 compatibility References: <20140811235528.GA26712@gemse> <20140530100130.GA15949@gemse> Message-ID: Processing control commands: > tags 749861 + patch Bug #749861 [src:qutemol] qutemol: Please update to use wxwidgets3.0 Added tag(s) patch. -- 749861: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=749861 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From olly at survex.com Mon Aug 11 23:55:28 2014 From: olly at survex.com (Olly Betts) Date: Tue, 12 Aug 2014 11:55:28 +1200 Subject: [Debichem-devel] Bug#749861: qutemol: patch for wx3.0 compatibility Message-ID: <20140811235528.GA26712@gemse> Control: tags 749861 + patch I had a go at updating qutemol to use wx3.0, with some success - see the attached NMU diff. I tested the rebuilt package by loading this sample file from gnuplot: gnuplot-4.6.4/demo/GM1_sugar.pdb It loads and displays OK, though clicking on some of the display option buttons causing a segfault. However, if I install the version of qutemol currently in unstable, it appears to crash when those same buttons are pressed, so this patch doesn't actually see to make things any worse, though I wonder if qutemol is actually fit for release as-is. Anyway, I'd appreciate further testing from people who've used the package before. Cheers, Olly -------------- next part -------------- A non-text attachment was scrubbed... Name: qutemol-0.4.1~cvs20081111-3.1-nmu.diff Type: text/x-diff Size: 5022 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Wed Aug 13 11:01:35 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 13 Aug 2014 11:01:35 +0000 Subject: [Debichem-devel] Processing of libwildmagic_5.13-1_amd64.changes Message-ID: libwildmagic_5.13-1_amd64.changes uploaded successfully to localhost along with the files: libwildmagic-dev_5.13-1_amd64.deb libwildmagic5_5.13-1_amd64.deb libwildmagic5-dbg_5.13-1_amd64.deb libwildmagic-common_5.13-1_all.deb libwildmagic-examples_5.13-1_amd64.deb libwildmagic_5.13-1.dsc libwildmagic_5.13.orig.tar.bz2 libwildmagic_5.13-1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Wed Aug 13 11:03:57 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 13 Aug 2014 11:03:57 +0000 Subject: [Debichem-devel] libwildmagic_5.13-1_amd64.changes is NEW Message-ID: binary:libwildmagic-common is NEW. binary:libwildmagic-dev is NEW. binary:libwildmagic-examples is NEW. binary:libwildmagic5 is NEW. binary:libwildmagic5-dbg is NEW. source:libwildmagic is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be patient. Packages are routinely processed through to the archive, and do feel free to browse the NEW queue[1]. If there is an issue with the upload, you will recieve an email from a member of the ftpteam. If you have any questions, you may reply to this email. [1]: https://ftp-master.debian.org/new.html From ftpmaster at ftp-master.debian.org Wed Aug 13 14:52:29 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 13 Aug 2014 14:52:29 +0000 Subject: [Debichem-devel] Processing of libpwiz_3.0.4624-10_amd64.changes Message-ID: libpwiz_3.0.4624-10_amd64.changes uploaded successfully to localhost along with the files: libpwiz-dev_3.0.4624-10_amd64.deb libpwiz3_3.0.4624-10_amd64.deb libpwiz-tools_3.0.4624-10_amd64.deb libpwiz-doc_3.0.4624-10_all.deb libpwiz_3.0.4624-10.dsc libpwiz_3.0.4624-10.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Wed Aug 13 15:35:01 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 13 Aug 2014 15:35:01 +0000 Subject: [Debichem-devel] libpwiz_3.0.4624-10_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 13 Aug 2014 15:21:21 +0200 Source: libpwiz Binary: libpwiz-dev libpwiz3 libpwiz-tools libpwiz-doc Architecture: source amd64 all Version: 3.0.4624-10 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libpwiz-dev - library to perform proteomics data analyses (devel files) libpwiz-doc - set of programs to perform proteomics data analyses (doc) libpwiz-tools - ProteoWizard command line tools libpwiz3 - library to perform proteomics data analyses (runtime) Closes: 748764 Changes: libpwiz (3.0.4624-10) unstable; urgency=medium . * Fix the libpwiz: run dh-autoreconf to update config.{sub, guess} and {libtool, aclocal}.m4 bug reported by Breno Leitao () (Closes: #748764). 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From owner at bugs.debian.org Wed Aug 13 15:39:32 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Wed, 13 Aug 2014 15:39:32 +0000 Subject: [Debichem-devel] Bug#748764: marked as done (libpwiz: run dh-autoreconf to update config.{sub, guess} and {libtool, aclocal}.m4) References: <201405201519.s4KFJoUG005208@d24av04.br.ibm.com> Message-ID: Your message dated Wed, 13 Aug 2014 15:35:01 +0000 with message-id and subject line Bug#748764: fixed in libpwiz 3.0.4624-10 has caused the Debian Bug report #748764, regarding libpwiz: run dh-autoreconf to update config.{sub, guess} and {libtool, aclocal}.m4 to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 748764: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748764 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: "Breno Leitao" Subject: libpwiz: run dh-autoreconf to update config.{sub, guess} and {libtool, aclocal}.m4 Date: Tue, 20 May 2014 12:19:50 -0300 Size: 5452 URL: -------------- next part -------------- An embedded message was scrubbed... From: Filippo Rusconi Subject: Bug#748764: fixed in libpwiz 3.0.4624-10 Date: Wed, 13 Aug 2014 15:35:01 +0000 Size: 6316 URL: From ftpmaster at ftp-master.debian.org Thu Aug 14 11:00:07 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Thu, 14 Aug 2014 11:00:07 +0000 Subject: [Debichem-devel] libwildmagic_5.13-1_amd64.changes ACCEPTED into unstable, unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 13 Aug 2014 11:16:20 +0200 Source: libwildmagic Binary: libwildmagic-dev libwildmagic5 libwildmagic5-dbg libwildmagic-common libwildmagic-examples Architecture: source amd64 all Version: 5.13-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libwildmagic-common - libraries for mathematics, physics, numerical methods - data file libwildmagic-dev - libraries for mathematics, physics, numerical methods - dev files libwildmagic-examples - libraries for mathematics, physics, numerical methods - example f libwildmagic5 - libraries for mathematics, physics, numerical methods - runtime libwildmagic5-dbg - libraries for mathematics, physics, numerical methods - debugging Closes: 736536 Changes: libwildmagic (5.13-1) unstable; urgency=low . * New upstream version implementing all the stuff that I used to put in the build fix patch. This patch is now removed. . * This version clears the way to Debian as upstream has removed the sentence in LibMathematics/NumericalAnalysis/Wm5EigenDecomposition.cpp that could lead to think that there might be copyright issues with the code (thanks to Thorsten Alteholz for spotting it). The author has commented about the sentence, removed it and fixed any potential issue by rewriting parts of the code (more details in private mail). This is an excerpt from a private mail: . That sentence is badly worded. It should have said: "TODO: This is a modified version of code from Numerical recipes in C that should not violate the copyright agreement. Regardless, rewrite the code to avoid any potential copyright issues." . * Reminder to (Closes: #736536) the bug. 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From ftpmaster at ftp-master.debian.org Thu Aug 14 11:00:06 2014 From: ftpmaster at ftp-master.debian.org (Thorsten Alteholz) Date: Thu, 14 Aug 2014 11:00:06 +0000 Subject: [Debichem-devel] libwildmagic_5.11-1_amd64.changes REJECTED Message-ID: old version with unclear copyright === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files which address our concerns. From ftpmaster at ftp-master.debian.org Thu Aug 14 11:00:06 2014 From: ftpmaster at ftp-master.debian.org (Thorsten Alteholz) Date: Thu, 14 Aug 2014 11:00:06 +0000 Subject: [Debichem-devel] libwildmagic_5.11-2_amd64.changes REJECTED Message-ID: old version with unclear copyright === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files which address our concerns. From noreply at release.debian.org Fri Aug 15 16:39:18 2014 From: noreply at release.debian.org (Debian testing watch) Date: Fri, 15 Aug 2014 16:39:18 +0000 Subject: [Debichem-devel] molds 0.3.0-3.1 MIGRATED to testing Message-ID: FYI: The status of the molds source package in Debian's testing distribution has changed. Previous version: (not in testing) Current version: 0.3.0-3.1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From arthur at info9.net Sat Aug 16 21:10:34 2014 From: arthur at info9.net (Arthur Marble) Date: Sat, 16 Aug 2014 16:10:34 -0500 Subject: [Debichem-devel] Bug#758322: libpwiz: FTBFS with clang instead of gcc Message-ID: <20140816211034.GA1179@playtux.info9.net> Package: libpwiz Severity: minor Tags: patch User: pkg-llvm-team at lists.alioth.debian.org Usertags: clang-ftbfs Hello, Using the rebuild infrastructure, your package fails to build with clang (instead of gcc). Detected this kind of error: http://clang.debian.net/status.php?version=3.5.0rc1&key=UNDEF_REF Full build log is available here: http://clang.debian.net/logs/2014-08-05/libpwiz_3.0.4624-8.1_unstable_clang.log Thanks, Arthur -- System Information: Debian Release: jessie/sid (unstable) Architecture: amd64 (x86_64) Kernel: Linux 3.14-2-amd64 Locale: LANG=en_US.UTF-8, LC_CTYPE="en_US.UTF-8" Shell: /bin/sh linked to /bin/dash Compiler: Debian clang version 3.5.0-+rc1-2 (tags/RELEASE_35/rc1) (based on LLVM 3.5.0) -------------- next part -------------- A non-text attachment was scrubbed... Name: undef_ref.patch Type: text/x-diff Size: 1966 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Mon Aug 18 11:09:22 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 11:09:22 +0000 Subject: [Debichem-devel] Processing of r-cran-maldiquant_1.11-1_amd64.changes Message-ID: r-cran-maldiquant_1.11-1_amd64.changes uploaded successfully to localhost along with the files: r-cran-maldiquant_1.11-1_amd64.deb r-cran-maldiquant_1.11-1.dsc r-cran-maldiquant_1.11.orig.tar.gz r-cran-maldiquant_1.11-1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 18 11:19:28 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 11:19:28 +0000 Subject: [Debichem-devel] Processing of r-cran-maldiquantforeign_0.9-1_amd64.changes Message-ID: r-cran-maldiquantforeign_0.9-1_amd64.changes uploaded successfully to localhost along with the files: r-cran-maldiquantforeign_0.9-1_amd64.deb r-cran-maldiquantforeign_0.9-1.dsc r-cran-maldiquantforeign_0.9.orig.tar.gz r-cran-maldiquantforeign_0.9-1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 18 11:20:02 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 11:20:02 +0000 Subject: [Debichem-devel] r-cran-maldiquant_1.11-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 13:04:34 +0200 Source: r-cran-maldiquant Binary: r-cran-maldiquant Architecture: source amd64 Version: 1.11-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: r-cran-maldiquant - GNU R package for quantitative analysis of mass spectrometry data Changes: r-cran-maldiquant (1.11-1) unstable; urgency=low . * New upstream release. * Move debian/upstream to debian/upstream/metadata. * Upload by Filippo Rusconi Checksums-Sha1: 1968c6931b7b1ce34b20a8c63c12c7e0a75e553d 2062 r-cran-maldiquant_1.11-1.dsc 1591bd99a5f097d22e81859d2d806734000f5950 1967171 r-cran-maldiquant_1.11.orig.tar.gz 7b2f5b7b68a1f629123408c879c514d67831117a 2640 r-cran-maldiquant_1.11-1.debian.tar.xz eb06f6ae80c1e1368e55ec23d8c87f5c689e5522 2086976 r-cran-maldiquant_1.11-1_amd64.deb Checksums-Sha256: 2bcdbc54549d602ffac81719bbee7272486d8dc0ce1887bb2964a8853fa0ed46 2062 r-cran-maldiquant_1.11-1.dsc 9bff5fec165f7f7db0dac1bfe897cbda218e824b7634df89ec355162d8f58f13 1967171 r-cran-maldiquant_1.11.orig.tar.gz 15348a039a36165ea7a4ad31951bd42e0d93b937d32bf1590d986f7a139d99ef 2640 r-cran-maldiquant_1.11-1.debian.tar.xz 322acf290be6022cc947b9b9baa6328f7cd9a8f323cd6319c0d1ae785e9b59ce 2086976 r-cran-maldiquant_1.11-1_amd64.deb Files: 7b8f82d48206c9241c100216cd253193 2086976 gnu-r optional r-cran-maldiquant_1.11-1_amd64.deb 242230dbfb5fa72b7abd353563937fac 2062 gnu-r optional r-cran-maldiquant_1.11-1.dsc f4bfe4c08ecee41b1875ca1a9c9060d6 1967171 gnu-r optional r-cran-maldiquant_1.11.orig.tar.gz 3c4f70ea50b449c8cc3065a4b55af3d6 2640 gnu-r optional r-cran-maldiquant_1.11-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT8d6DAAoJEEGrSE12lM9Cvw8P/2jcFjRDGDeIRQEENrjtqtMR gnGGuVp9W1nXMCbd7ekLYJ9UYhA9UAOtmmw5I6cTSenQ71l7Ja4nCBrfH2jJ4TIc EN7oldh6TIxaAuoqsq5QQQpXRADtfCSSesRhTG6+hK8IXK2h0elXKONllnioEbp1 SEMfy0uJURn0tliSDkX4xM8v5zbSY16PFpH5we+pz/skpDBgj0HmHF/uqcTwepIc JcrR01ZT359PlzoWWZZ7F7oYMuj/c8LqVObzD7Wh4PRyWE6jrry2+PvtrnoFWNFj kO9OHc+8elJTkW1q/2l+sXh+iT0dMMpfuTsAg43HwJz94OZOvo86oMaZI0ayA57a fiwqrWDzFfoDGoZhMm6+q1MTaGnw2EeIlOaNtMQFe7oV0+jWrXJ/lu98F66YGH6s aPGyEES1zK0NXAQd9elJ2hUa/xRmKSklh6WGgejCJUR7s4DwYFYV9uuGgzsb3ia9 jQqAA8R4jiHs4QV8msh9iJFGx1EY7z7wGzZlx4nHxNW7vMQzMNp6+4pWQ9SwVD0a fuf2aD4CgLQ7im3xEeknu45kugXXIOjZ1k3mtjmTruifyoJC5HR/7/lFb1ghduwf Vw5zoOHIU35Wpv8vvPNo3CysGo1dBW/SnNVVox9rgVshw1PhnK7ojHtpCgapU6AH pNO+R78AfHO1WWoHgzmn =wzuL -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Mon Aug 18 11:33:59 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 11:33:59 +0000 Subject: [Debichem-devel] r-cran-maldiquantforeign_0.9-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 13:11:09 +0200 Source: r-cran-maldiquantforeign Binary: r-cran-maldiquantforeign Architecture: source amd64 Version: 0.9-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: r-cran-maldiquantforeign - GNU R package providing import/export routines for MALDIquant Changes: r-cran-maldiquantforeign (0.9-1) unstable; urgency=low . [ The Debichem Group ] * New upstream release. . [ Filippo Rusconi ] * Upload by Filippo Rusconi . 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From ftpmaster at ftp-master.debian.org Mon Aug 18 13:10:19 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 13:10:19 +0000 Subject: [Debichem-devel] Processing of libpwiz_3.0.6585-2_amd64.changes Message-ID: libpwiz_3.0.6585-2_amd64.changes uploaded successfully to localhost along with the files: libpwiz-dev_3.0.6585-2_amd64.deb libpwiz3_3.0.6585-2_amd64.deb libpwiz-tools_3.0.6585-2_amd64.deb libpwiz-doc_3.0.6585-2_all.deb libpwiz_3.0.6585-2.dsc libpwiz_3.0.6585-2.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 18 13:10:19 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 13:10:19 +0000 Subject: [Debichem-devel] Processing of lutefisk_1.0.7+dfsg-4_amd64.changes Message-ID: lutefisk_1.0.7+dfsg-4_amd64.changes uploaded successfully to localhost along with the files: lutefisk_1.0.7+dfsg-4_amd64.deb lutefisk-doc_1.0.7+dfsg-4_all.deb lutefisk_1.0.7+dfsg-4.dsc lutefisk_1.0.7+dfsg-4.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 18 13:20:00 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 13:20:00 +0000 Subject: [Debichem-devel] libpwiz_3.0.6585-2_amd64.changes REJECTED Message-ID: Processing raised an exception: [Errno 2] No such file or directory: '/srv/ftp-master.debian.org/tmp/dakPvmhhE/libpwiz_3.0.6585.orig.tar.gz'. Traceback (most recent call last): File "/srv/ftp-master.debian.org/dak/dak/daklib/archive.py", line 912, in check chk().check(self) File "/srv/ftp-master.debian.org/dak/dak/daklib/checks.py", line 143, in check self._check_hashes(upload, source.filename, source.files.itervalues()) File "/srv/ftp-master.debian.org/dak/dak/daklib/checks.py", line 162, in _check_hashes f.check(upload.directory) File "/srv/ftp-master.debian.org/dak/dak/daklib/upload.py", line 141, in check size = os.stat(path).st_size OSError: [Errno 2] No such file or directory: '/srv/ftp-master.debian.org/tmp/dakPvmhhE/libpwiz_3.0.6585.orig.tar.gz' === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files which address our concerns. From ftpmaster at ftp-master.debian.org Mon Aug 18 13:20:25 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 13:20:25 +0000 Subject: [Debichem-devel] Processing of mmass_5.5.0-3_amd64.changes Message-ID: mmass_5.5.0-3_amd64.changes uploaded successfully to localhost along with the files: mmass_5.5.0-3_all.deb mmass-modules_5.5.0-3_amd64.deb mmass_5.5.0-3.dsc mmass_5.5.0-3.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 18 13:20:33 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 13:20:33 +0000 Subject: [Debichem-devel] lutefisk_1.0.7+dfsg-4_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 11:46:48 +0200 Source: lutefisk Binary: lutefisk lutefisk-doc Architecture: source amd64 all Version: 1.0.7+dfsg-4 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: lutefisk - de novo interpretation of peptide CID spectra lutefisk-doc - De novo interpretation of peptide CID spectra - documentation Changes: lutefisk (1.0.7+dfsg-4) unstable; urgency=medium . * mv upstream upstream/metadata . * Switch to more concise debhelper rules syntax. 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From ftpmaster at ftp-master.debian.org Mon Aug 18 13:34:29 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 13:34:29 +0000 Subject: [Debichem-devel] mmass_5.5.0-3_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 11:47:51 +0200 Source: mmass Binary: mmass mmass-modules Architecture: source all amd64 Version: 5.5.0-3 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: mmass - Mass spectrometry tool for proteomics mmass-modules - Mass spectrometry tool for proteomics - extension modules Changes: mmass (5.5.0-3) unstable; urgency=medium . * mv upstream upstream/metadata; . * Bump-up to Standards-Version: 3.9.5. 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From ftpmaster at ftp-master.debian.org Mon Aug 18 15:01:37 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 15:01:37 +0000 Subject: [Debichem-devel] Processing of openms_1.11.1-5_amd64.changes Message-ID: openms_1.11.1-5_amd64.changes uploaded successfully to localhost along with the files: libopenms1.11_1.11.1-5_amd64.deb libopenms-dev_1.11.1-5_amd64.deb topp_1.11.1-5_amd64.deb openms-common_1.11.1-5_all.deb openms-doc_1.11.1-5_all.deb openms_1.11.1-5_all.deb openms_1.11.1-5.dsc openms_1.11.1-5.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 18 15:30:29 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 18 Aug 2014 15:30:29 +0000 Subject: [Debichem-devel] openms_1.11.1-5_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 11:48:52 +0200 Source: openms Binary: libopenms1.11 libopenms-dev topp openms-common openms-doc openms Architecture: source amd64 all Version: 1.11.1-5 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libopenms-dev - library for LC/MS data management and analysis - dev files libopenms1.11 - library for LC/MS data management and analysis - runtime openms - package for LC/MS data management and analysis openms-common - package for LC/MS data management and analysis - shared data openms-doc - package for LC/MS data management and analysis - documentation topp - set of programs implementing The OpenMS Proteomic Pipeline Changes: openms (1.11.1-5) unstable; urgency=medium . * mv upstream upstream/metadata Checksums-Sha1: 0e56a669d206cb7ee381abceddd67e8b5258d0d1 2824 openms_1.11.1-5.dsc db7843c67d7cb29d09469704cad71998942d30c9 76220 openms_1.11.1-5.debian.tar.xz 1fdab8ec0e7589d2d83fac80424ce1f4e4fcf4ec 5112562 libopenms1.11_1.11.1-5_amd64.deb 30d7db32874028d4af4109d751f9833d98eccbc2 691064 libopenms-dev_1.11.1-5_amd64.deb cd695d5f60c63637f68fcb2599453352ac43b6e2 7258082 topp_1.11.1-5_amd64.deb 31941c7f2d5d8c5f85caf34fda200e8366f814d4 28354068 openms-common_1.11.1-5_all.deb 9fdb61aae87bca01d508964267291adf0b5841ab 17958308 openms-doc_1.11.1-5_all.deb eea3b8afaf286187e7d32b0d72513d741784e663 30026 openms_1.11.1-5_all.deb Checksums-Sha256: 25be7d81bfebdfb47e719274710796b56c8f998af8f8a1658761353d28cddc6a 2824 openms_1.11.1-5.dsc c47d6da18f7080c30e245c177a20f597a1ab9c422aabe4e6ca338ab39a16f32a 76220 openms_1.11.1-5.debian.tar.xz 1ec6ea9e8ff160abf3fbc33ff24aa4c3257e507f85b6e159cebd6467db5423fd 5112562 libopenms1.11_1.11.1-5_amd64.deb 3ea051c62d1369f800fe5d510f06c946ed7ba00339aec68286d04c0102cc7223 691064 libopenms-dev_1.11.1-5_amd64.deb c9c1dedfb544e1ca3c84077485a689faafc58ee914bbf458df7c2160fc7f14c5 7258082 topp_1.11.1-5_amd64.deb e5243d79d8ae20ea21499c8217eef28af26bdad6c28359c78e9346e96c7cd755 28354068 openms-common_1.11.1-5_all.deb 29b4ec1af4b6e425a5ef1788aadd1a2ed370c484442df233e420ca47bf164d42 17958308 openms-doc_1.11.1-5_all.deb 9ff27e91ed057a9532abd4e575a2cbb50096eaef26cd76a37716cb53120fba5e 30026 openms_1.11.1-5_all.deb Files: d20bf8ac85e5420cb4598f2ff733077a 5112562 libs optional libopenms1.11_1.11.1-5_amd64.deb 50469e040a7c269d24669b935a465089 691064 libdevel optional libopenms-dev_1.11.1-5_amd64.deb 7b07754f80169caecdb025d9544d80c7 7258082 science optional topp_1.11.1-5_amd64.deb 927215b6f97ace7569ff67cc634db4ae 28354068 science optional openms-common_1.11.1-5_all.deb 331bcff3054871713185900fb135bbb7 17958308 doc optional openms-doc_1.11.1-5_all.deb 387e639290b5a4e9d54b3a6107b20944 30026 science optional openms_1.11.1-5_all.deb 4922f9ae8d55ff5d8310f329d90fc2ab 2824 science optional openms_1.11.1-5.dsc ca0584df53e8627c0892004fa1da3a8e 76220 science optional openms_1.11.1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT8hJcAAoJEEGrSE12lM9CmMgP/jxVKflByh0ANssaIxE76CDs rrd3Fyd05YGdwqCPzgCUhjH28YSw4JSATtKwwmlnnkmVtxeipe07ooLYpQL2ca/x NQEA/5vcdxcAAApja7aHe9GNy90s74R/TX6fHuTvFK0TyKGHw3y5CnACSU6Y6F3w 1pS27fk4Zb3uqsl6PByljl/JlIaU6A2KksSmXrOClbLoI7S7YJur4JuYuojNDeX0 RtBCU+Bfphf9uWdlQh90o9KjBHLaiOUc2hqMskE1wSW/cX7ykuGaCmee45DSbd67 qyVFSG7BTL1tUjmg/ksfFARwbd9GKNKTJtCc7a3SpF0eov+RL0NNmbJcrRQKZb/S nluB7A/5OaxjDWN5ZEq3vPjbg1ljWQEs29v7A4f99ZYJbC1rVxEum3qkrekrcMwh WX/7dVmWpOW2MH3IgGSJyCMK6FUGVfS0eZ1a0dGBbqfuMeQez6iorVt2X9fUOKNL GFZaQVVc2eWPRXhsQmXK+LU2XwN3ZS+N5wSPYgk3pcoEQQmk+RAcSwyKzs8d/Oty 4dV7ev2qcWNE3WWP/Bc81RMI1IasYQNwtpcgm+VmqNPKtrAJtY1NY7BiiIgxX1+Q X2VJ+XUxZdFAY+cAzx1b4pHSMvg8xA8hs4va2XvIQXvVCnZbUaAVmK3nNS2wshD6 c9Qc+zmZlzu9wMJCpXS3 =1MbI -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Tue Aug 19 10:56:15 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 19 Aug 2014 10:56:15 +0000 Subject: [Debichem-devel] Processing of libpwiz_3.0.6585-2_amd64.changes Message-ID: libpwiz_3.0.6585-2_amd64.changes uploaded successfully to localhost along with the files: libpwiz-dev_3.0.6585-2_amd64.deb libpwiz3_3.0.6585-2_amd64.deb libpwiz-tools_3.0.6585-2_amd64.deb libpwiz-doc_3.0.6585-2_all.deb libpwiz_3.0.6585-2.dsc libpwiz_3.0.6585.orig.tar.gz libpwiz_3.0.6585-2.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Tue Aug 19 11:04:34 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 19 Aug 2014 11:04:34 +0000 Subject: [Debichem-devel] libpwiz_3.0.6585-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 11:44:11 +0200 Source: libpwiz Binary: libpwiz-dev libpwiz3 libpwiz-tools libpwiz-doc Architecture: source amd64 all Version: 3.0.6585-2 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libpwiz-dev - library to perform proteomics data analyses (devel files) libpwiz-doc - set of programs to perform proteomics data analyses (doc) libpwiz-tools - ProteoWizard command line tools libpwiz3 - library to perform proteomics data analyses (runtime) Changes: libpwiz (3.0.6585-2) unstable; urgency=medium . * mv upstream upstream/metadata Checksums-Sha1: 9c82d62b46a2b90f57309098f1372add8694e55e 2533 libpwiz_3.0.6585-2.dsc dcaeee15870b9f7cf572c4c0f80b5d92c9b62d12 2559400 libpwiz_3.0.6585.orig.tar.gz e10b07010f127ecd354604f391d97142ab6d34fc 14748 libpwiz_3.0.6585-2.debian.tar.xz 378d2089f0fe06c7beea787ef8698163dc45334e 4218734 libpwiz-dev_3.0.6585-2_amd64.deb cc0ac491e38dd7b86f0d6319f9a0c666f1933c9c 3000914 libpwiz3_3.0.6585-2_amd64.deb 9053969d835bda943185aec700d614d25743db30 107846 libpwiz-tools_3.0.6585-2_amd64.deb 57b1926fc8217b6ab64a1173b7376377256faf3c 4102998 libpwiz-doc_3.0.6585-2_all.deb Checksums-Sha256: 76c8dd84d231767d98489ef63fbaa486c4d213355318018b017279cd727aff9e 2533 libpwiz_3.0.6585-2.dsc 723bd3bb9901402cc948eed3312debc36013b7d8fe26c2e8abe0f1281c63c057 2559400 libpwiz_3.0.6585.orig.tar.gz c33227be1509952328f21a0ba3ed549c130ff2f8d861334f13fef42b81d13dd0 14748 libpwiz_3.0.6585-2.debian.tar.xz 8748e762720d11e40c4bd77308db1fbb197c8df68791ab4ecadf37c50bda1c08 4218734 libpwiz-dev_3.0.6585-2_amd64.deb e597a9179284edebce5fffa2a0e76ccc165a8fb2cb365702a2bf337ae01f9038 3000914 libpwiz3_3.0.6585-2_amd64.deb 88c7fc8988d153094c6e69a9fd4fafcdaca43708e50500bf715ff0368a16441c 107846 libpwiz-tools_3.0.6585-2_amd64.deb 13e5e31efd990c690eb50e7a3523722afe8b3ad567401209ccd59adedaed54cd 4102998 libpwiz-doc_3.0.6585-2_all.deb Files: ec80d9fdcfdc9bf54005ec3a3fb9d3c5 4218734 libdevel extra libpwiz-dev_3.0.6585-2_amd64.deb 9accd9d339a0e9e614066bd204c9e5aa 3000914 libs extra libpwiz3_3.0.6585-2_amd64.deb f8a11a1eb752225749764e4483b3e64d 107846 science extra libpwiz-tools_3.0.6585-2_amd64.deb fe98a45ecd22f213951668c8f734ccbf 4102998 doc extra libpwiz-doc_3.0.6585-2_all.deb fae91894b25d7cf56b4d6802d6d4c6d7 2533 libs extra libpwiz_3.0.6585-2.dsc 14afeb5a6161990c213d3f5e3a72ace9 2559400 libs extra libpwiz_3.0.6585.orig.tar.gz c3e8db5b40a4731574d4852c53a8be17 14748 libs extra libpwiz_3.0.6585-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT8yzPAAoJEEGrSE12lM9C1lcQAIDwHdgZE8zEIsmSgxGdCb8V kuDDLEtcvKVQfC/SgC20CZbKLSqZH654fyGQfOkbbBQIyECNOcb+fTXUAInY1zPU xn+P8ZrSevev2tzBYng/tXs5tsOmHzFNLDSGwqN1s7YJsJGpnGJaYaHrYpFrsjHU io4cEomCt+PeWDwWly6NEaTV+bPlWyjXYkUvDFZ6av495jym58kIDC2NiLGFNCiT 1wkYQ+WjYzcBkOK9GPyJc7mKVP9Mp+RcjduEiB/h83gd2Zz4JqtwEXm5xlLmLlLa u32JLIznxJc5/GDEL/l20v7s8rMq3xVipAoIeLTVGKHmS7Zrnl/UN1KWk3H+gad7 K8isA96Nk1/0DkynBleZB8rXq4LbS3If0u8UaQdpUFqWAmO+X4zgGbVparVmUXRO 68VGwbDQYKiuf/GVxMggiIbfKX+w8imJGPO8sEVJB6WjKGSNhGbQueGUYgqns+7f KITpWojTSbvTXstDZki0rfWWMdUbwnwqZP80D4BQ6rkGU3Y4vG/iSz613fP7kS9L PZRXwui8QO/0dIWS14WqpszUueoxUsUQ+m4gMgKi6UX8QZBhJ4fPkkKQGiCi81Jm wZUqgmHIrp0yxl5R9Z707igenpxZGHMzLtvnBHIrzVKmRZADDiT8TgRMQn/1EtzH i5+s35uNs06sB1sad2f6 =eKhA -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Wed Aug 20 12:24:15 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 20 Aug 2014 12:24:15 +0000 Subject: [Debichem-devel] Processing of python-mzml_0.7.4-dfsg-3_amd64.changes Message-ID: python-mzml_0.7.4-dfsg-3_amd64.changes uploaded successfully to localhost along with the files: python-mzml_0.7.4-dfsg-3_all.deb python-mzml-doc_0.7.4-dfsg-3_all.deb python-mzml_0.7.4-dfsg-3.dsc python-mzml_0.7.4-dfsg-3.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Wed Aug 20 12:35:20 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 20 Aug 2014 12:35:20 +0000 Subject: [Debichem-devel] python-mzml_0.7.4-dfsg-3_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 20 Aug 2014 14:18:01 +0200 Source: python-mzml Binary: python-mzml python-mzml-doc Architecture: source all Version: 0.7.4-dfsg-3 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: python-mzml - mzML mass spectrometric data parsing python-mzml-doc - mzML mass spectrometric data parsing - documentation Changes: python-mzml (0.7.4-dfsg-3) unstable; urgency=medium . * mv upstream upstream/metadata; . * d/control: Canonicalize the VCS uris; . * d/control: set Standards-Version: 3.9.5 Checksums-Sha1: ad3fe9804a5a16c84cbdf3c6ed1cfc86a4fd22af 2267 python-mzml_0.7.4-dfsg-3.dsc be1d5b271418912b69e21679b18669cc382a095f 4216 python-mzml_0.7.4-dfsg-3.debian.tar.xz c86b752607975a49bb3704c8baea866e266c638c 68308 python-mzml_0.7.4-dfsg-3_all.deb e70ebc03791795b47a43ce48e24185c3410cfe56 362970 python-mzml-doc_0.7.4-dfsg-3_all.deb Checksums-Sha256: 29000099af8d183d1a0b9ff1d803800b749e3c8ff557b8e89c5f68752fca7a29 2267 python-mzml_0.7.4-dfsg-3.dsc 53913a67dcafdd22e01d400c06dd1c408bbe3d3595727c7b76a57423f3dac4df 4216 python-mzml_0.7.4-dfsg-3.debian.tar.xz b0a39ac0bb539cf2894fc08fb982458c989116407f297a7406de2b54e0c1e480 68308 python-mzml_0.7.4-dfsg-3_all.deb 0fac93838b89d7ccb4f90eb9b1adc5f46c4adae7777f6ae5dc32aefb89fb5aa4 362970 python-mzml-doc_0.7.4-dfsg-3_all.deb Files: b74ee8f8dda905d3d19fde21644c9929 68308 python optional python-mzml_0.7.4-dfsg-3_all.deb d4fa2b8154368c8912c1a9350c4d8940 362970 doc optional python-mzml-doc_0.7.4-dfsg-3_all.deb dbea0602d62ec57af24bbea6f43210c4 2267 python optional python-mzml_0.7.4-dfsg-3.dsc 2b4c843ec7ada4fe25bcedc81730fe62 4216 python optional python-mzml_0.7.4-dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT9JKUAAoJEEGrSE12lM9C/PgP/0lWIxG/+7QkkJTP7HHDJy/N yjeZrBgESvsPasuQjezqVP35jeXJZg2JlPTpk2D0SZJjHUPa2InfnsELP1rBDCoe QQypJ0kK+JnkscTZL8mvou+D7rCtlPF3ETxZUubsXJXzdwzze92Pv5SWJhQ4yTDG 8JQhi/Au5BgVXXHs2MW3xmezsIP1+O3oDsfOeDg49PLm9DMe37WNJPKmr9/MlD7S 43zSChVdAmhmA9mE+OJDhQqXQzfhJB4YEPNhETPWZhVMsUI288pIt6WgHQOLHHKz erS5zddizymZ1OJeuJwp23drCpO0SOvSm5LKUXTkBpBv2fVH9hWC8B3Pv2CLuHdf teA+1HbpE3wTYPdBRqabHoJCBzRY5pekIwyCW2ZjDdnSeeKKzLmhDjwKpYY8tY3h baAkT785hzxVbDQojM3c2KwaRq0+9yTHKzbZT0JsrhiDiavN0waVUNwOlScZFX3z kEFgsh2Zxp/3ts8rMHk8itygm7b+WqKiERqe6vG04N2pD4BUL5kZ3KSzNjFjWi2m AMVNic/bB7OPWTsMO/ULhBDvGzaM0G4pIGI3ZYJLOWL5o8DWX8EProy0AmFxvGBh 5tFGjOebTEA1TRQWAaBd6ZYD6rvLc2D1z2k4xjLJYoUj7RJUQ2FZvDyPI3hPb5uf BkrzA9IUpzyBjA/CsGWU =JIpJ -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Wed Aug 20 12:39:22 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 20 Aug 2014 12:39:22 +0000 Subject: [Debichem-devel] Processing of tandem-mass_2013.09.01-2_amd64.changes Message-ID: tandem-mass_2013.09.01-2_amd64.changes uploaded successfully to localhost along with the files: tandem-mass_2013.09.01-2_amd64.deb tandem-mass_2013.09.01-2.dsc tandem-mass_2013.09.01-2.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Wed Aug 20 12:49:19 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 20 Aug 2014 12:49:19 +0000 Subject: [Debichem-devel] tandem-mass_2013.09.01-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Aug 2014 10:47:26 +0200 Source: tandem-mass Binary: tandem-mass Architecture: source amd64 Version: 1:2013.09.01-2 Distribution: unstable Urgency: medium Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: tandem-mass - mass spectrometry software for protein identification Changes: tandem-mass (1:2013.09.01-2) unstable; urgency=medium . * mv upstream upstream/metadata; . * Bump up StandardsVersion to 3.9.5. 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From andreas at an3as.eu Thu Aug 21 06:47:45 2014 From: andreas at an3as.eu (Andreas Tille) Date: Thu, 21 Aug 2014 08:47:45 +0200 Subject: [Debichem-devel] Bug#747259: [Help] gfortran problem: Cannot assign to a named constant Message-ID: <20140821064745.GD15688@an3as.eu> Hi, any idea how to resolve this gfortran problem: Automatic builds of abinit with gfortran 4.8.2 (as unstable uses these days) have been failing: gfortran -DHAVE_CONFIG_H -I. -I../.. -I../../src/incs -I../../src/incs -I/?BUILDDIR?/abinit-7.6.3+dfsg/fallbacks/exports/include -ffree-form -J/?BUILDDIR?/abinit-7.6.3+dfsg/src/mods -g -O2 -fstack-protector --param=ssp-buffer-size=4 -c -o m_ListCdagC.o m_ListCdagC.F90 m_ListCdagC.F90:129.29: IF(ALLOCATED(list_1%list)) THEN \newline deallocate(list_1%list, stat=ABI_ALL 1 Error: Cannot assign to a named constant at (1) m_ListCdagC.F90:242.29: IF(ALLOCATED(list_temp)) THEN \newline deallocate(list_temp, stat=ABI_ALLOC 1 Error: Cannot assign to a named constant at (1) m_ListCdagC.F90:954.29: IF(ALLOCATED(list_1%list)) THEN \newline deallocate(list_1%list, stat=ABI_ALL 1 Error: Cannot assign to a named constant at (1) make[4]: *** [m_ListCdagC.o] Error 1 make[4]: Leaving directory `/?BUILDDIR?/abinit-7.6.3+dfsg/src/62_ctqmc' Thanks for any hint Andreas. -- http://fam-tille.de From Daniel.Leidert.Spam at gmx.net Thu Aug 21 08:26:55 2014 From: Daniel.Leidert.Spam at gmx.net (Daniel Leidert) Date: Thu, 21 Aug 2014 10:26:55 +0200 Subject: [Debichem-devel] Bug#747259: Aw: Bug#747259: [Help] gfortran problem: Cannot assign to a named constant In-Reply-To: <20140821064745.GD15688@an3as.eu> References: <20140821064745.GD15688@an3as.eu> Message-ID: An HTML attachment was scrubbed... URL: From olly at survex.com Sat Aug 23 07:18:40 2014 From: olly at survex.com (Olly Betts) Date: Sat, 23 Aug 2014 19:18:40 +1200 Subject: [Debichem-devel] Bug#758949: mmass: Please update to use wxpython3.0 Message-ID: <20140823071840.GA10070@gemse> Source: mmass Version: 5.5.0-3 Severity: important Tags: sid jessie User: freewx-maint at lists.alioth.debian.org Usertags: wxpy3.0 Control: block 755757 by -1 We're aiming to migrate the archive to using wxpython3.0 instead of wxwidgets2.8, and hope to drop wxwidgets2.8 before jessie is released. This transition is already underway, and is being tracked by the release team here: https://release.debian.org/transitions/html/wxpython3.0.html The wxPython 3.0 API mostly adds to the wxPython2.8 API. Many packages work with wxPython 3.0 without any changes, but there are a few incompatibilities. For example, wx.Color is no longer supported as an alias for wx.Colour, and some constants which were deprecated in 2.8 have been removed. All the removed constants I'm aware of were set to 0 in wxPython 2.8, so removing them is still compatible with 2.8. To assist updating to wxPython 3.0, I've put together a script which will help make the mechanical changes required. This is in a git repo on collab-maint along with a README about using it and updating packages for wxPython 3.0 in general: http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git The script has some options to control the sorts of changes it makes - see the README and --help output for more information - you can view the latest version of the README online here: http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git/tree/README I've developed this script by trying to convert 20+ packages. Please try it out on your package - in many cases, it should be enough to get your package working (if it doesn't already) - if it does, please upload (and close this bug). If the script doesn't do the job, please let me know (or improve the script if you can figure out what it needs to do to get your package working). Another issue you may hit is that wxWidgets 3.0 now defaults to enabling its "WXDEBUG" checks for incorrect API usage, so some applications will emit scary sounding "assertion failures". These are unlikely to actually be new, just in a default build of 2.8, such incorrect uses were handled quietly behind the scenes. Sometimes these are easy to fix, but if not you can easily patch the application to tell wx 3.0 to handle them in the same way wx 2.8 does - details of how to do so are in the README: http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git/tree/README I'm happy to sponsor uploads for this transition, though if you have an active sponsor already check with them first - I don't want to tread on anyone's toes. Cheers, Olly From owner at bugs.debian.org Sat Aug 23 07:21:09 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sat, 23 Aug 2014 07:21:09 +0000 Subject: [Debichem-devel] Processed: mmass: Please update to use wxpython3.0 References: <20140823071840.GA10070@gemse> <20140823071840.GA10070@gemse> Message-ID: Processing control commands: > block 755757 by -1 Bug #755757 [release.debian.org] transition: wxpython3.0 755757 was blocked by: 758436 757306 757755 757431 734799 757429 758507 758947 757289 758695 758946 758941 758714 758948 757308 758944 758942 757434 758940 758943 757304 757886 758939 758499 757313 757299 758846 758204 755757 was not blocking any bugs. Added blocking bug(s) of 755757: 758949 -- 755757: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=755757 758949: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=758949 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From noreply at release.debian.org Sun Aug 24 16:39:12 2014 From: noreply at release.debian.org (Debian testing watch) Date: Sun, 24 Aug 2014 16:39:12 +0000 Subject: [Debichem-devel] lutefisk 1.0.7+dfsg-4 MIGRATED to testing Message-ID: FYI: The status of the lutefisk source package in Debian's testing distribution has changed. Previous version: 1.0.7+dfsg-3 Current version: 1.0.7+dfsg-4 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Sun Aug 24 16:39:13 2014 From: noreply at release.debian.org (Debian testing watch) Date: Sun, 24 Aug 2014 16:39:13 +0000 Subject: [Debichem-devel] mmass 5.5.0-3 MIGRATED to testing Message-ID: FYI: The status of the mmass source package in Debian's testing distribution has changed. Previous version: 5.5.0-2 Current version: 5.5.0-3 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Sun Aug 24 16:39:13 2014 From: noreply at release.debian.org (Debian testing watch) Date: Sun, 24 Aug 2014 16:39:13 +0000 Subject: [Debichem-devel] openms 1.11.1-5 MIGRATED to testing Message-ID: FYI: The status of the openms source package in Debian's testing distribution has changed. Previous version: (not in testing) Current version: 1.11.1-5 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From aurel32 at debian.org Mon Aug 25 02:42:47 2014 From: aurel32 at debian.org (Aurelien Jarno) Date: Mon, 25 Aug 2014 04:42:47 +0200 Subject: [Debichem-devel] Bug#734229 blocking the ppc64el architecture bootstrap Message-ID: <20140825024247.GA12116@ohm.rr44.fr> Dear maintainer, The ppc64el architecture has been added to the Debian archive. Your package liboglappth fails to build as reported in bug #734229 and the build log is available on [1]. It would be very nice if you can upload a fixed version of this package. Don't hesitate to ask questions if you need help to fix this bug. If you lack time for that, I can also proceed with an NMU. Thanks, Aurelien [1] https://buildd.debian.org/status/logs.php?pkg=liboglappth&arch=ppc64el -- Aurelien Jarno GPG: 4096R/1DDD8C9B aurelien at aurel32.net http://www.aurel32.net From aurel32 at debian.org Mon Aug 25 02:43:34 2014 From: aurel32 at debian.org (Aurelien Jarno) Date: Mon, 25 Aug 2014 04:43:34 +0200 Subject: [Debichem-devel] Bug#734572 blocking the ppc64el architecture bootstrap Message-ID: <20140825024334.GA12786@ohm.rr44.fr> Dear maintainer, The ppc64el architecture has been added to the Debian archive. Your package mopac7 fails to build as reported in bug #734572 and the build log is available on [1]. It would be very nice if you can upload a fixed version of this package. Don't hesitate to ask questions if you need help to fix this bug. If you lack time for that, I can also proceed with an NMU. Thanks, Aurelien [1] https://buildd.debian.org/status/logs.php?pkg=mopac7&arch=ppc64el -- Aurelien Jarno GPG: 4096R/1DDD8C9B aurelien at aurel32.net http://www.aurel32.net From aurel32 at debian.org Mon Aug 25 02:42:47 2014 From: aurel32 at debian.org (Aurelien Jarno) Date: Mon, 25 Aug 2014 04:42:47 +0200 Subject: [Debichem-devel] Bug#734229: blocking the ppc64el architecture bootstrap Message-ID: <20140825024247.GA12116@ohm.rr44.fr> Dear maintainer, The ppc64el architecture has been added to the Debian archive. Your package liboglappth fails to build as reported in bug #734229 and the build log is available on [1]. It would be very nice if you can upload a fixed version of this package. Don't hesitate to ask questions if you need help to fix this bug. If you lack time for that, I can also proceed with an NMU. Thanks, Aurelien [1] https://buildd.debian.org/status/logs.php?pkg=liboglappth&arch=ppc64el -- Aurelien Jarno GPG: 4096R/1DDD8C9B aurelien at aurel32.net http://www.aurel32.net From aurel32 at debian.org Mon Aug 25 02:43:34 2014 From: aurel32 at debian.org (Aurelien Jarno) Date: Mon, 25 Aug 2014 04:43:34 +0200 Subject: [Debichem-devel] Bug#734572: blocking the ppc64el architecture bootstrap Message-ID: <20140825024334.GA12786@ohm.rr44.fr> Dear maintainer, The ppc64el architecture has been added to the Debian archive. Your package mopac7 fails to build as reported in bug #734572 and the build log is available on [1]. It would be very nice if you can upload a fixed version of this package. Don't hesitate to ask questions if you need help to fix this bug. If you lack time for that, I can also proceed with an NMU. Thanks, Aurelien [1] https://buildd.debian.org/status/logs.php?pkg=mopac7&arch=ppc64el -- Aurelien Jarno GPG: 4096R/1DDD8C9B aurelien at aurel32.net http://www.aurel32.net From ftpmaster at ftp-master.debian.org Mon Aug 25 03:36:59 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 25 Aug 2014 03:36:59 +0000 Subject: [Debichem-devel] Processing of gromacs_5.0-3_amd64.changes Message-ID: gromacs_5.0-3_amd64.changes uploaded successfully to localhost along with the files: gromacs-data_5.0-3_all.deb gromacs_5.0-3_amd64.deb gromacs-dev_5.0-3_amd64.deb gromacs-mpich_5.0-3_amd64.deb gromacs-openmpi_5.0-3_amd64.deb gromacs_5.0-3.dsc gromacs_5.0-3.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Mon Aug 25 03:50:40 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 25 Aug 2014 03:50:40 +0000 Subject: [Debichem-devel] gromacs_5.0-3_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 24 Aug 2014 20:02:24 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: source all amd64 Version: 5.0-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (5.0-3) unstable; urgency=medium . * Upload to unstable. 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From doko at ubuntu.com Mon Aug 25 07:14:25 2014 From: doko at ubuntu.com (Matthias Klose) Date: Mon, 25 Aug 2014 09:14:25 +0200 Subject: [Debichem-devel] Bug#759196: openbabel has a logic error to run the testsuite Message-ID: <53FAE251.3070801@ubuntu.com> Package: src:openbabel Version: 2.3.2+dfsg-1.3 Severity: important Tags: sid jessie patch looking at other bug reports reporting segfaults with openbabel, that might be relevant. --- debian/rules~ +++ debian/rules @@ -16,7 +16,7 @@ DH_AUTO_CONFIGURE_OPTS := -DCMAKE_BUILD_ -DOBPERL_INSTALLDIRS=vendor \ -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON \ -DENABLE_OPENMP=ON -ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) +ifneq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) DH_AUTO_CONFIGURE_OPTS += -DENABLE_TESTS=OFF endif From noreply at release.debian.org Mon Aug 25 16:39:15 2014 From: noreply at release.debian.org (Debian testing watch) Date: Mon, 25 Aug 2014 16:39:15 +0000 Subject: [Debichem-devel] libwildmagic 5.13-1 MIGRATED to testing Message-ID: FYI: The status of the libwildmagic source package in Debian's testing distribution has changed. Previous version: (not in testing) Current version: 5.13-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Mon Aug 25 16:39:15 2014 From: noreply at release.debian.org (Debian testing watch) Date: Mon, 25 Aug 2014 16:39:15 +0000 Subject: [Debichem-devel] libpwiz 3.0.6585-2 MIGRATED to testing Message-ID: FYI: The status of the libpwiz source package in Debian's testing distribution has changed. Previous version: 3.0.4624-8.1 Current version: 3.0.6585-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From olly at survex.com Mon Aug 25 22:08:14 2014 From: olly at survex.com (Olly Betts) Date: Mon, 25 Aug 2014 23:08:14 +0100 Subject: [Debichem-devel] Bug#758949: Bug#758949: mmass: Please update to use wxpython3.0 In-Reply-To: <20140825115139.GA3021@licorne> References: <20140823071840.GA10070@gemse> <20140825115139.GA3021@licorne> Message-ID: <20140825220813.GA8633@survex.com> On Mon, Aug 25, 2014 at 01:51:39PM +0200, Filippo Rusconi sent from wrote: > On Sat, Aug 23, 2014 at 07:18:40PM +1200, Olly Betts wrote: > >http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git > > Thank you for your bug report. I tried to perform the migration using > your script and it seemed to run fine. Roughly 10 files were updated. > > I then set Depends to python-wxgtk3.0. But I get the the > following run-time error: > > Traceback (most recent call last): > > File "/usr/share/mmass/mmass.py", line 168, in > app = mMass(0) > > File "/usr/lib/python2.7/dist-packages/wx-3.0-gtk2/wx/_core.py", line 8631, in __init__ > self._BootstrapApp() > > File "/usr/lib/python2.7/dist-packages/wx-3.0-gtk2/wx/_core.py", line 8196, in _BootstrapApp > return _core_.PyApp__BootstrapApp(*args, **kwargs) > > File "/usr/share/mmass/mmass.py", line 45, in OnInit > self.frame = mainFrame(None, -1, 'mMass') > > File "/usr/share/mmass/gui/main_frame.py", line 135, in __init__ > self.makeGUI() > > File "/usr/share/mmass/gui/main_frame.py", line 733, in makeGUI > self.spectrumPanel = panelSpectrum(self, self.documents) > > File "/usr/share/mmass/gui/panel_spectrum.py", line 57, in __init__ > self.makeGUI() > > File "/usr/share/mmass/gui/panel_spectrum.py", line 68, in makeGUI > self.makeSpectrumCanvas() > > File "/usr/share/mmass/gui/panel_spectrum.py", line 89, in makeSpectrumCanvas > self.spectrumCanvas.draw(self.container) > > File "/usr/share/mmass/mspy/plot_canvas.py", line 1080, in draw > dc = wx.BufferedDC(wx.ClientDC(self), self.plotBuffer) > > File "/usr/lib/python2.7/dist-packages/wx-3.0-gtk2/wx/_gdi.py", line 5100, in __init__ > _gdi_.ClientDC_swiginit(self,_gdi_.new_ClientDC(*args, **kwargs)) > > PyAssertionError: C++ assertion "m_window" failed at ../src/gtk/dcclient.cpp(2043) in DoGetSize(): GetSize() doesn't work without window [...] > Apparently this is related to drawing to a given window context. But > my knowledge is very sparse in this field. If you wanted to look to > it, I'd be delighted. It looks to me like its trying to draw on a window which doesn't actually yet exist at the Gtk level - this probably means that Show() hasn't yet been called (or at least that it hasn't yet resulted in the window actually being shown). The quick fix is to disable such checks (they are off by default in wx 2.8, so this probably isn't actually a new issue) - details are here: http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git/tree/README#n30 If you want to address the reported issue, then I think gating this drawing code on IsShown() returning true for the window should work. Cheers, Olly From olly at survex.com Tue Aug 26 03:42:01 2014 From: olly at survex.com (Olly Betts) Date: Tue, 26 Aug 2014 15:42:01 +1200 Subject: [Debichem-devel] Bug#742031: Bug#742031: openbabel: Please update to use wxwidgets3.0 In-Reply-To: <20140530114304.GB1503@raptor.chemicalconnection.dyndns.org> References: <20140318140043.GA13408@gemse> <20140530114304.GB1503@raptor.chemicalconnection.dyndns.org> Message-ID: <20140826034201.GA11550@gemse> On Fri, May 30, 2014 at 01:43:04PM +0200, Michael Banck wrote: > tags 742031 +pending > thanks [...] > Thanks, I have committed this in subversion now and it will be in the > next upload. This bug has been tagged pending for almost 3 months now. I'd like to get the remaining packages in the wxwidgets3.0 transition uploaded while there's still a decent span of time for any bugs to get shaken out before the jessie freeze. It looks like perl 5.20 is now in testing, and openbabel is due to migrate today: https://release.debian.org/migration/testing.pl?package=openbabel Once that has happened, any objections to me making an NMU for this? Or would you prefer to make a maintainer upload? Cheers, Olly From noreply at release.debian.org Tue Aug 26 16:39:16 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 26 Aug 2014 16:39:16 +0000 Subject: [Debichem-devel] openbabel 2.3.2+dfsg-1.3 MIGRATED to testing Message-ID: FYI: The status of the openbabel source package in Debian's testing distribution has changed. Previous version: 2.3.2+dfsg-1.1 Current version: 2.3.2+dfsg-1.3 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Aug 26 16:39:16 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 26 Aug 2014 16:39:16 +0000 Subject: [Debichem-devel] python-mzml 0.7.4-dfsg-3 MIGRATED to testing Message-ID: FYI: The status of the python-mzml source package in Debian's testing distribution has changed. Previous version: 0.7.4-dfsg-2 Current version: 0.7.4-dfsg-3 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Aug 26 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 26 Aug 2014 16:39:17 +0000 Subject: [Debichem-devel] tandem-mass 1:2013.09.01-2 MIGRATED to testing Message-ID: FYI: The status of the tandem-mass source package in Debian's testing distribution has changed. Previous version: 1:2013.09.01-1 Current version: 1:2013.09.01-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From ivo.dedecker at ugent.be Tue Aug 26 18:28:24 2014 From: ivo.dedecker at ugent.be (Ivo De Decker) Date: Tue, 26 Aug 2014 20:28:24 +0200 Subject: [Debichem-devel] Bug#759366: psi4: ftbfs on mips Message-ID: <20140826182824.GA16268@ugent.be> package: psi4 version: 4.0~beta5+dfsg-2 severity: serious Hi, It seems psi4 only built once on mips, and later rebuilds failed. https://buildd.debian.org/status/package.php?p=psi4&suite=unstable This is could be caused by underpowered buildds. If that's the case it, it might be better to ask for the removal of the outdated binaries on mips, and maybe ask for blacklist on the mips builldds (or remove mips from the architecture list). Cheers, Ivo From ftpmaster at ftp-master.debian.org Wed Aug 27 17:28:50 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 27 Aug 2014 17:28:50 +0000 Subject: [Debichem-devel] Processing of abinit_7.8.2-1_amd64.changes Message-ID: abinit_7.8.2-1_amd64.changes uploaded successfully to localhost along with the files: abinit_7.8.2-1_amd64.deb abinit-doc_7.8.2-1_all.deb abinit-data_7.8.2-1_all.deb abinit_7.8.2-1.dsc abinit_7.8.2.orig.tar.gz abinit_7.8.2-1.debian.tar.xz Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Wed Aug 27 17:34:00 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 27 Aug 2014 17:34:00 +0000 Subject: [Debichem-devel] abinit_7.8.2-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 21 Aug 2014 11:33:37 +0200 Source: abinit Binary: abinit abinit-doc abinit-data Architecture: source amd64 all Version: 7.8.2-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andreas Tille Description: abinit - package for electronic structure calculations abinit-data - package for electronic structure calculations (Data files) abinit-doc - package for electronic structure calculations (Documentation) Closes: 747259 Changes: abinit (7.8.2-1) unstable; urgency=medium . * New upstream version (adapted patches) Closes: #747259 * No need to remove documentation without source any more since it was removed by upstream * moved debian/upstream to debian/upstream/metadata * Upstream changed the way to install docs so several changes in d/rules and d/abinit-doc.install were needed. 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From owner at bugs.debian.org Wed Aug 27 17:36:12 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Wed, 27 Aug 2014 17:36:12 +0000 Subject: [Debichem-devel] Bug#747259: marked as done (abinit: FTBFS: Cannot assign to a named constant) References: <20140506211939.12152.98631.reportbug@ghostwheel.internal.ucko.debian.net> Message-ID: Your message dated Wed, 27 Aug 2014 17:34:00 +0000 with message-id and subject line Bug#747259: fixed in abinit 7.8.2-1 has caused the Debian Bug report #747259, regarding abinit: FTBFS: Cannot assign to a named constant to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 747259: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=747259 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: "Aaron M. Ucko" Subject: abinit: FTBFS: Cannot assign to a named constant Date: Tue, 06 May 2014 17:19:39 -0400 Size: 3872 URL: -------------- next part -------------- An embedded message was scrubbed... From: Andreas Tille Subject: Bug#747259: fixed in abinit 7.8.2-1 Date: Wed, 27 Aug 2014 17:34:00 +0000 Size: 6353 URL: From ftpmaster at ftp-master.debian.org Fri Aug 29 04:00:17 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 29 Aug 2014 04:00:17 +0000 Subject: [Debichem-devel] elpa_2013.11.008-1_amd64.changes ACCEPTED into unstable, unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Thu, 05 Jun 2014 23:07:10 +0200 Source: elpa Binary: libelpa0 libelpa-dev Architecture: source amd64 Version: 2013.11.008-1 Distribution: unstable Urgency: low Maintainer: Debichem Team Changed-By: Michael Banck Description: libelpa-dev - Eigenvalue SoLvers for Petaflop-Applications (Development version libelpa0 - Eigenvalue SoLvers for Petaflop-Applications Changes: elpa (2013.11.008-1) unstable; urgency=low . * Initial release. Checksums-Sha1: 1c6bc05e88d6cbe9c035ac63625fffadf83227da 2065 elpa_2013.11.008-1.dsc 012445ec2d3e6df9f79ad74547acc4dcb177e8a2 856006 elpa_2013.11.008.orig.tar.gz d22b8cff113e1775b00a12c4f65da85b3d9cf0e4 2340 elpa_2013.11.008-1.debian.tar.xz 3e88a926e6cbfde1f40dde748e79c9ec9787141a 84040 libelpa0_2013.11.008-1_amd64.deb 4f8a570ca8b99c51e17f1870e15b2260ed187273 85152 libelpa-dev_2013.11.008-1_amd64.deb Checksums-Sha256: 439a436e2dbe6d2729c6b09a5463bf63d46fe14843402d8e56b2ef9b8e348d17 2065 elpa_2013.11.008-1.dsc d4a028fddb64a7c1454f08b930525cce0207893c6c770cb7bf92ab6f5d44bd78 856006 elpa_2013.11.008.orig.tar.gz 9f643db145e5fff03797b82475029d8635b30e2e279049d6dc240a5724dd4207 2340 elpa_2013.11.008-1.debian.tar.xz 161ff5799203b1dca0853d13ed3befd6f0ae8f63776fef20f53265c76d43ee4d 84040 libelpa0_2013.11.008-1_amd64.deb c21d054661368bb363bcb9409d330f40f526068118229d827e26cf9444ebcd89 85152 libelpa-dev_2013.11.008-1_amd64.deb Files: 6c479f990ff88ab381f14b56d0d78de1 84040 libs optional libelpa0_2013.11.008-1_amd64.deb 4402b43332405dd4b64c8e5b5b932cbe 85152 libdevel optional libelpa-dev_2013.11.008-1_amd64.deb 3697023ce609fd1b1a4bae7e74660123 2065 science optional elpa_2013.11.008-1.dsc 3252a6b370239a27afec8c6c47360442 856006 science optional elpa_2013.11.008.orig.tar.gz acf7cf808071d2c182e133ee71ba1da1 2340 science optional elpa_2013.11.008-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iQIcBAEBAgAGBQJTkNyNAAoJENxoaie0NIGw8UAP+gOn9xosAFw+NfR2v7t+uIPK SL91xvqO3FrcHYGOZryIW43t9yO/M7BSIE+LYSQ54c5rNk6ImEYsR0KsSjDQ43zs 51KrwJAhAmVDFVkHj+zFK+F1xVZ0wbhuBqjk6DN4qJouGlEImS5NroI0IjQH62Qc sPe1VV//pum0ng03BwIqLjRQ17Yg43Q8dYfKNo7ZP4uEWXOa6ZFhRx2hkUtk94bA Tbu8/x90cKGUbvw7vJmUe5xQ75uIxc0vpHk+uEEO20UiyhgmMmEVt8uSKzVzIx3R mN6SOKIrupkQYg5A69MpR3tPaKzInh/Nw0dg3WNdRku6eOaKjkrZW/Hs/hokPI19 iez4qflMyzBaxvSniWctYEko6K+nJdM3QtLuvZwNP69ak3YGtO/gZRnxGbyQbTtT eHmXemhXOVcyWBg2aBo84Sq7STvvnzcS5IPs+wm4FWlWtvdDvbpynIdBFsU3rnuG VNxvwhFSuqbrNRY+Lsql42q7JSG3onu7j/l4+Q2Gdrtmm4wY60z8/AZooLlWuc4q B9AcUMp2O3jElMi+Q6NljIaDpXktpzc1hOQM5QecaNud//cr346f+ZhWXcApVr7Z SBHotwEXkRf+NieDZ1VmR7DbVfySMIr5/XjJvyA/SAje0+HsWI2HfS7d3LOBdNMF J0EvHRIEIoMxPrO6TfuT =hJSE -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From noreply at release.debian.org Fri Aug 29 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Fri, 29 Aug 2014 16:39:17 +0000 Subject: [Debichem-devel] r-cran-maldiquant 1.11-1 MIGRATED to testing Message-ID: FYI: The status of the r-cran-maldiquant source package in Debian's testing distribution has changed. Previous version: 1.10-2 Current version: 1.11-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Fri Aug 29 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Fri, 29 Aug 2014 16:39:17 +0000 Subject: [Debichem-devel] r-cran-maldiquantforeign 0.9-1 MIGRATED to testing Message-ID: FYI: The status of the r-cran-maldiquantforeign source package in Debian's testing distribution has changed. Previous version: 0.8-1 Current version: 0.9-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From ftpmaster at ftp-master.debian.org Sat Aug 30 15:09:47 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sat, 30 Aug 2014 15:09:47 +0000 Subject: [Debichem-devel] Processing of qutemol_0.4.1~cvs20081111-3.1_amd64.changes Message-ID: qutemol_0.4.1~cvs20081111-3.1_amd64.changes uploaded successfully to localhost along with the files: qutemol_0.4.1~cvs20081111-3.1.dsc qutemol_0.4.1~cvs20081111-3.1.diff.gz Greetings, Your Debian queue daemon (running on host franck.debian.org) From noreply at release.debian.org Sat Aug 30 16:39:13 2014 From: noreply at release.debian.org (Debian testing watch) Date: Sat, 30 Aug 2014 16:39:13 +0000 Subject: [Debichem-devel] gromacs 5.0-3 MIGRATED to testing Message-ID: FYI: The status of the gromacs source package in Debian's testing distribution has changed. Previous version: 4.6.6-1 Current version: 5.0-3 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From lucas at lucas-nussbaum.net Sat Aug 30 19:03:18 2014 From: lucas at lucas-nussbaum.net (Lucas Nussbaum) Date: Sat, 30 Aug 2014 12:03:18 -0700 Subject: [Debichem-devel] Bug#759860: pymol: FTBFS: contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1986:31: error: format not a string literal and no format arguments [-Werror=format-security] Message-ID: <20140830190318.GA6688@xanadu.blop.info> Source: pymol Version: 1.7.1.3-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20140830 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -ffast-math -funroll-loops -O3 -fcommon > cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ > contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': > contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] > int last_ctnumber = -1; > ^ > contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_timestep(void*, const molfile_timestep_t*)': > contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1986:31: error: format not a string literal and no format arguments [-Werror=format-security] > fprintf(stderr, e.what()); > ^ > cc1plus: some warnings being treated as errors > error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 > dh_auto_build: python setup.py build --force returned exit code 1 > make[1]: *** [override_dh_auto_build] Error 1 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/08/30/pymol_1.7.1.3-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. The build was done with DEB_BUILD_OPTIONS="parallel=4", so if your packaging tries to support this, it might be a good idea to explore whether this might be the cause of the failure. From olly at survex.com Sat Aug 30 15:08:06 2014 From: olly at survex.com (Olly Betts) Date: Sat, 30 Aug 2014 12:08:06 -0300 Subject: [Debichem-devel] Bug#749861: qutemol: diff for NMU version 0.4.1~cvs20081111-3.1 Message-ID: <20140830150806.GA18761@debian> Control: tags 749861 + pending Dear maintainer, I've prepared an NMU for qutemol (versioned as 0.4.1~cvs20081111-3.1) and uploaded it to DELAYED/5. The patch is the same as the one I previously posted, except I've updated the date of the debian/changelog entry. Please feel free to tell me if I should delay it longer. Cheers, Olly -------------- next part -------------- A non-text attachment was scrubbed... Name: qutemol-0.4.1~cvs20081111-3.1-nmu.diff Type: text/x-diff Size: 5022 bytes Desc: not available URL: From owner at bugs.debian.org Sat Aug 30 20:51:13 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sat, 30 Aug 2014 20:51:13 +0000 Subject: [Debichem-devel] Processed: qutemol: diff for NMU version 0.4.1~cvs20081111-3.1 References: <20140830150806.GA18761@debian> <20140530100130.GA15949@gemse> Message-ID: Processing control commands: > tags 749861 + pending Bug #749861 [src:qutemol] qutemol: Please update to use wxwidgets3.0 Added tag(s) pending. -- 749861: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=749861 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From lucas at lucas-nussbaum.net Sat Aug 30 21:57:22 2014 From: lucas at lucas-nussbaum.net (Lucas Nussbaum) Date: Sat, 30 Aug 2014 14:57:22 -0700 Subject: [Debichem-devel] Bug#759974: votca-csg: FTBFS: Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) Message-ID: <20140830215722.GA16731@xanadu.blop.info> Source: votca-csg Version: 1.2.3-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20140830 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/?PKGBUILDDIR?' > dh_auto_configure -- -DLIB=lib/x86_64-linux-gnu > -- The C compiler identification is GNU 4.9.1 > -- The CXX compiler identification is GNU 4.9.1 > -- Check for working C compiler: /usr/bin/cc > -- Check for working C compiler: /usr/bin/cc -- works > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Check for working CXX compiler: /usr/bin/c++ > -- Check for working CXX compiler: /usr/bin/c++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Found TXT2TAGS: /usr/bin/txt2tags > -- Boost version: 1.55.0 > -- Found the following Boost libraries: > -- program_options > CMake Warning (dev) at CMakeLists.txt:70 (find_package): > Syntax Warning in cmake code at > > /?PKGBUILDDIR?/CMakeModules/FindVOTCA_TOOLS.cmake:57:497 > > Argument not separated from preceding token by whitespace. > This warning is for project developers. Use -Wno-dev to suppress it. > > -- checking for module 'libvotca_tools' > -- package 'libvotca_tools' not found > -- Found VOTCA_TOOLS: /usr/lib/x86_64-linux-gnu/libvotca_tools.so > -- Looking for VotcaToolsFromC in /usr/lib/x86_64-linux-gnu/libvotca_tools.so; > -- Looking for VotcaToolsFromC in /usr/lib/x86_64-linux-gnu/libvotca_tools.so; - found > -- Looking for assert.h > -- Looking for assert.h - found > -- Looking for C++ include algorithm > -- Looking for C++ include algorithm - found > -- Looking for C++ include fstream > -- Looking for C++ include fstream - found > -- Looking for C++ include iomanip > -- Looking for C++ include iomanip - found > -- Looking for C++ include iostream > -- Looking for C++ include iostream - found > -- Looking for C++ include list > -- Looking for C++ include list - found > -- Looking for C++ include map > -- Looking for C++ include map - found > -- Looking for C++ include numeric > -- Looking for C++ include numeric - found > -- Looking for C++ include sstream > -- Looking for C++ include sstream - found > -- Looking for C++ include stdexcept > -- Looking for C++ include stdexcept - found > -- Looking for C++ include string > -- Looking for C++ include string - found > -- Looking for C++ include vector > -- Looking for C++ include vector - found > -- Looking for C++ include cstdlib > -- Looking for C++ include cstdlib - found > -- Looking for sqrt in m > -- Looking for sqrt in m - found > -- checking for module 'libgmx' > -- package 'libgmx' not found > -- Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) > CMake Error at src/libcsg/CMakeLists.txt:25 (message): > gromacs not found, make sure you have installed at least the gromacs-4.0.7 > and it's dev package. If the gromacs module was not found above, make sure > you have sourced GMXRC or set PKG_CONFIG_PATH yourself. If you have a > double precision version of gromacs enable to build against it with > -DGMX_DOUBLE=ON. If you have gromacs-5.0 installed enable to build against > it with -DWITH_GMX_DEVEL=ON. Gromacs support can be disable it with > -DWITH_GMX=OFF. > > > -- Configuring incomplete, errors occurred! > See also "/?PKGBUILDDIR?/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log". > dh_auto_configure: cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DLIB=lib/x86_64-linux-gnu returned exit code 1 > debian/rules:17: recipe for target 'override_dh_auto_configure' failed > make[1]: *** [override_dh_auto_configure] Error 2 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/08/30/votca-csg_1.2.3-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. The build was done with DEB_BUILD_OPTIONS="parallel=4", so if your packaging tries to support this, it might be a good idea to explore whether this might be the cause of the failure. From nbreen at debian.org Sat Aug 30 22:10:09 2014 From: nbreen at debian.org (Nicholas Breen) Date: Sat, 30 Aug 2014 15:10:09 -0700 Subject: [Debichem-devel] Bug#759974: Bug#759974: votca-csg: FTBFS: Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) In-Reply-To: <20140830215722.GA16731@xanadu.blop.info> References: <20140830215722.GA16731@xanadu.blop.info> Message-ID: <20140830221009.GA16983@ofb.net> On Sat, Aug 30, 2014 at 02:57:22PM -0700, Lucas Nussbaum wrote: > Source: votca-csg > Version: 1.2.3-1 [snip] > > -- checking for module 'libgmx' > > -- package 'libgmx' not found > > -- Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) > > CMake Error at src/libcsg/CMakeLists.txt:25 (message): > > gromacs not found, make sure you have installed at least the gromacs-4.0.7 > > and it's dev package. If the gromacs module was not found above, make sure > > you have sourced GMXRC or set PKG_CONFIG_PATH yourself. If you have a > > double precision version of gromacs enable to build against it with > > -DGMX_DOUBLE=ON. If you have gromacs-5.0 installed enable to build against > > it with -DWITH_GMX_DEVEL=ON. Gromacs support can be disable it with > > -DWITH_GMX=OFF. This one looks like it's indirectly my fault - I just uploaded gromacs 5.0 to unstable a few days ago, and didn't realize it changed a build parameter in votca-csg. libgmx and libmd are replaced by the merged libgromacs. Christoph, do you want to upload a new package? I can also make the suggested CMake change and upload it myself if you'd prefer. - Nicholas From pere at hungry.com Sun Aug 31 08:26:47 2014 From: pere at hungry.com (Petter Reinholdtsen) Date: Sun, 31 Aug 2014 10:26:47 +0200 Subject: [Debichem-devel] Bug#722162: libghemical: library underlinked Message-ID: <2flzjeluks8.fsf@diskless.uio.no> Hi. This bug caused libghemical and ghemical to be removed from testing 2013-11-27. Any hope to have it fixed? We want to include ghemical in Debian Edu Jessie, and thus want it to be included in the next stable rease. :) -- Happy hacking Petter Reinholdtsen From pere at hungry.com Sun Aug 31 08:40:17 2014 From: pere at hungry.com (Petter Reinholdtsen) Date: Sun, 31 Aug 2014 10:40:17 +0200 Subject: [Debichem-devel] Bug#752834: gnome-chemistry-utils: build-depends on xulrunner-dev which is gone Message-ID: <2fltx4tuk5q.fsf@diskless.uio.no> Hi. This bug caused gchempaint to be removed from testing 2014-07-26. Any hope to have it fixed? We want to include gchempaint in Debian Edu Jessie, and thus want it to be included in the next stable rease. :) -- Happy hacking Petter Reinholdtsen From junghans at votca.org Sun Aug 31 21:34:10 2014 From: junghans at votca.org (Christoph Junghans) Date: Sun, 31 Aug 2014 15:34:10 -0600 Subject: [Debichem-devel] Bug#759974: Bug#759974: Bug#759974: votca-csg: FTBFS: Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) In-Reply-To: <20140830221009.GA16983@ofb.net> References: <20140830215722.GA16731@xanadu.blop.info> <20140830221009.GA16983@ofb.net> Message-ID: 2014-08-30 16:10 GMT-06:00 Nicholas Breen : > On Sat, Aug 30, 2014 at 02:57:22PM -0700, Lucas Nussbaum wrote: >> Source: votca-csg >> Version: 1.2.3-1 > [snip] >> > -- checking for module 'libgmx' >> > -- package 'libgmx' not found >> > -- Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) >> > CMake Error at src/libcsg/CMakeLists.txt:25 (message): >> > gromacs not found, make sure you have installed at least the gromacs-4.0.7 >> > and it's dev package. If the gromacs module was not found above, make sure >> > you have sourced GMXRC or set PKG_CONFIG_PATH yourself. If you have a >> > double precision version of gromacs enable to build against it with >> > -DGMX_DOUBLE=ON. If you have gromacs-5.0 installed enable to build against >> > it with -DWITH_GMX_DEVEL=ON. Gromacs support can be disable it with >> > -DWITH_GMX=OFF. > > This one looks like it's indirectly my fault - I just uploaded gromacs 5.0 to > unstable a few days ago, and didn't realize it changed a build parameter in > votca-csg. libgmx and libmd are replaced by the merged libgromacs. Votca 1.2.3 doesn't support gromacs-5, but I am about to make a new release (1.2.4), which supports it. > > Christoph, do you want to upload a new package? I can also make the suggested > CMake change and upload it myself if you'd prefer. Can you give me a 1 min intro, which commands I have to execute to do an NMU? I have access to the debichem svn and know what to upload for 1.2.4, but what's next after that? Christoph > > - Nicholas > > _______________________________________________ > Debichem-devel mailing list > Debichem-devel at lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debichem-devel -- Christoph Junghans Web: http://www.compphys.de From andreas at an3as.eu Tue Aug 26 11:27:25 2014 From: andreas at an3as.eu (Andreas Tille) Date: Tue, 26 Aug 2014 11:27:25 -0000 Subject: [Debichem-devel] Please be verbose whether you would like to get your Blend promoted by tasksel Message-ID: <20140826112723.GA26589@an3as.eu> Hi, yesterday I joined the videostream of the installer BoF at DebConf[1]. I also became a bit involved via IRC. Joey Hess raised the question about the criteria to add a Blend or not. I answered "all in the list of the bug report #758116" which IMHO fits the criterion of "actively maintained and some valuable content for users". I think it should be also a criterion that the team behind the Blend confirms that they are interested and so I'm hereby pinging all lists in question to ask you for confirmation. I have set Reply-To to the bug report and the general Blends list in case you are interested in further discussion with other Blends. Any input is welcome to make sure users will realise the fruits of your great work at the earliest point in time. Kind regards Andreas. [1] https://summit.debconf.org/debconf14/meeting/44/debian-installer-and-cd-bof/ -- http://fam-tille.de