[Debichem-devel] Bug#783653: pymol: Segmentation fault immediately after loading pdb

[Michael Beck]

Hello,
Same error:

" PyMOL(TM) Molecular Graphics System, Version 1.7.2.1.
 Copyright (c) Schrodinger, LLC.
 All Rights Reserved.

    Created by Warren L. DeLano, Ph.D.

    PyMOL is user-supported open-source software.  Although some versions
    are freely available, PyMOL is not in the public domain.

    If PyMOL is helpful in your work or study, then please volunteer
    support for our ongoing efforts to create open and affordable scientific
    software by purchasing a PyMOL Maintenance and/or Support subscription.

    More information can be found at "http://www.pymol.org".

    Enter "help" for a list of commands.
    Enter "help <command-name>" for information on a specific command.

 Hit ESC anytime to toggle between text and graphics.

 Detected OpenGL version 2.0 or greater. Shaders available.
 Detected GLSL version 1.30.
 OpenGL graphics engine:
  GL_VENDOR:   VMware, Inc.
  GL_RENDERER: Gallium 0.4 on llvmpipe (LLVM 3.5, 256 bits)
  GL_VERSION:  3.0 Mesa 10.3.2
 Detected 2 CPU cores.  Enabled multithreaded rendering.
 ExecutiveLoad: "h2co.xyz" loaded as "h2co", through state 1.
Segmentation fault
"

I agree, looking at it now this could be due to running it in VMWare
fusion. Perhaps I should look elsewhere for a fix.

Sincerely,
Michael

On Thu, Apr 30, 2015 at 2:21 PM, Michael Banck <mbanck at debian.org> wrote:

> Hi,
>
> On Thu, Apr 30, 2015 at 01:22:28PM -0400, Michael Beck wrote:
> >  Detected OpenGL version 2.0 or greater. Shaders available.
> >  Detected GLSL version 1.30.
> >  OpenGL graphics engine:
> >   GL_VENDOR:   VMware, Inc.
> >   GL_RENDERER: Gallium 0.4 on llvmpipe (LLVM 3.5, 256 bits)
> >   GL_VERSION:  3.0 Mesa 10.3.2
>
> My bet would be that this is an issue with your graphics driver.  Can
> you display any kind of graphics, e.g. the formaldehyde molecule I've
> attaced in XYZ format? Just running "pymol h2co.xyz" works here.
>
>
> Michael
>
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