[Debichem-devel] Bug#817001: rdkit: Build-Depends: python-pandas but it is not installable in stretch

Mon Mar 7 00:10:42 UTC 2016

Package: src:rdkit
Version: 201503-3
Severity: serious

Dear maintainer:

I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed.

But the failure is build-depends related, so it has nothing to do
with the fact that I was doing "dpkg-buildpackage -A", hence
the serious severity.

--------------------------------------------------------------------------------
[...]
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Iswa4G/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 
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(Reading database ... 14527 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, python-dev, python-epydoc, python-imaging, python-numpy, python-pandas, python-sphinx, texlive-fonts-recommended, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended
Filtered Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, python-dev, python-epydoc, python-imaging, python-numpy, python-pandas, python-sphinx, texlive-fonts-recommended, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended
dpkg-deb: building package 'sbuild-build-depends-rdkit-dummy' in '/<<BUILDDIR>>/resolver-aImjHh/apt_archive/sbuild-build-depends-rdkit-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ Sources [336 B]
Get:5 file:/<<BUILDDIR>>/resolver-aImjHh/apt_archive ./ Packages [663 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

+------------------------------------------------------------------------------+
| Install rdkit build dependencies (apt-based resolver)                        |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:

The following packages have unmet dependencies:
 sbuild-build-depends-rdkit-dummy : Depends: python-pandas but it is not installable
E: Unable to correct problems, you have held broken packages.
apt-get failed.
Package installation failed
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
  sbuild-build-depends-core-dummy*
0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
After this operation, 0 B of additional disk space will be used.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14527 files and directories currently installed.)
Removing sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
E: Package build dependencies not satisfied; skipping

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build-Space: 0
Build-Time: 0
Distribution: stretch
Fail-Stage: install-deps
Host Architecture: amd64
Install-Time: 0
Job: rdkit_201503-3
Machine Architecture: amd64
Package: rdkit
Package-Time: 0
Source-Version: 201503-3
Space: 0
Status: failed
Version: 201503-3
--------------------------------------------------------------------------------
Finished at 20160305-2206
Build needed 00:00:00, 0k disc space
--------------------------------------------------------------------------------

Thanks.