From Peter.Parzer at med.uni-heidelberg.de Wed Dec 7 14:47:43 2016 From: Peter.Parzer at med.uni-heidelberg.de (Parzer, Peter) Date: Wed, 7 Dec 2016 14:47:43 +0000 Subject: [Neurodebian-devel] Compile error for fsl-5.0-core with gpu Message-ID: Hi, I tried to compile the package fsl-5.0-core with CUDA enabled, but it fails with an error, that does not make sense to me: /usr/bin/nvcc --shared --compiler-options '-fPIC' -o CUDA/libbedpostx_cuda.so CUDA/init_gpu.cu CUDA/samples.cu CUDA/diffmodels.cu CUDA/runmcmc.cu CUDA/xfibres_gpu.cu -O3 -gencode=arch=compute_20,code=\"sm_20,compute_20\" -gencode=arch=compute_30,code=\"sm_30,compute_30\" -gencode=arch=compute_35,code=\"sm_35,compute_35\" -gencode=arch=compute_50,code=\"sm_50,compute_50\" -lcudart -lcuda -lcurand -I. -L/usr/lib64 -L/usr/lib -ICUDA/options -I/usr/include/thrust -I/srv/src/fslbuild/fsl-5.0.9/extras/include/newmat -I/srv/src/fslbuild/fsl-5.0.9/include -I/srv/src/fslbuild/fsl-5.0.9/extras/include/boost -maxrregcount=64 -DBOOST_NOINLINE='__attribute__ ((noinline))' ptxas warning : Too big maxrregcount value specified 64, will be ignored ptxas warning : Too big maxrregcount value specified 64, will be ignored /usr/include/string.h: In function ?void* __mempcpy_inline(void*, const void*, size_t)?: /usr/include/string.h:652:42: error: ?memcpy? was not declared in this scope return (char *) memcpy (__dest, __src, __n) + __n; The function memcpy is of course declared in /usr/lib/string.h, so I have no clue what is going on. Has someone an idea how I can fix this? Peter From Peter.Parzer at med.uni-heidelberg.de Fri Dec 9 10:45:17 2016 From: Peter.Parzer at med.uni-heidelberg.de (Parzer, Peter) Date: Fri, 9 Dec 2016 10:45:17 +0000 Subject: [Neurodebian-devel] Strange behavior of FSL FEAT on Ubuntu 16.04 and mounted Samba shares Message-ID: <12d5f8f47ad945bba96924a96e484415@EXC06.ads.krz.uni-heidelberg.de> Hi, I found a very strange problem with fsl feat (from the package fsl-5.0-core) and cannot track down the real source of this bug. When upgrading Ubuntu from 14.04 to 16.04 fsl feat stopped working correctly. Is started to fill up the file report_log.html with zeros at a rate of 100MB per second until the disk was full. We have our data on a mounted Samba share, so I tried to run feat with a copy of the data on the local drive. Now the program worked without problems. Next I searched the fsl scripts for locations that refer to the file report_log.html. I found one possible location in the shell script mainfeatreg at lines 131-134. So I commented out the following lines in this script: #if [ $3 = 1 -a -d logs ] # then # cat logs/* > report_log.html #fi Now feat is working also on the mounted Samba shares. The strange thing is, that I cannot imagine how the simple shell command "cat logs/* > report_log.html" could cause such a fatal problem. Peter From riccardo.lobianco at unipa.it Tue Dec 27 16:55:26 2016 From: riccardo.lobianco at unipa.it (Riccardo Lo Bianco) Date: Tue, 27 Dec 2016 17:55:26 +0100 Subject: [Neurodebian-devel] Jasp installation Message-ID: <1482857726.23716.1.camel@unipa.it> I tried several times to download and install Jasp statistics software from Neurodebian. I was able to follow the instructions and install Jasp from the German and/or Greek mirror.? For example I run in terminal: wget -O- http://neuro.debian.net/lists/yakkety.gr.libre | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list sudo apt-key adv --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9 followed by: sudo apt-get update and sudo apt install jasp Everything seems to work fine and I am able to open the software. Yet, as soon as I try to open a csv file with data, the software crashes ans shuts immediately. I am using Ubuntu 16.10 with Gnome desktop. Please, don't hesitate to ask for additional info. Any help is really appreciated. --? ?? ?? Riccardo -------------- next part -------------- An HTML attachment was scrubbed... URL: