Dear neurodebian community,<div><br></div><div>I don't seem to find Atropos nor antsRegistration in my ANTs installation. Is this due to an incompatibility between current neurodebian/ANTs versions?</div><div><br></div>
<div>I have successfully used template creation as well as various normalization scripts within ANTs.</div><div><br></div><div>Thank you for any comments! (for more details, please see below)</div><div><br></div><div>Christian</div>
<div><br></div><div><br></div><div>*********</div><div><br></div><div>Current setup:</div><div><br></div><div>VirtualBox 4.1.22 on Windows 7</div><div><br></div><div>NeuroDebian VM version: 6.0.5 amd64 (updated)</div><div>
<br></div><div>ANTs version: 1.9.2+svn680.dfsg-3~nd60+1<br></div><div><br></div><div>Synaptic indicates the following files are installed:</div><div>/.<br></div><div><div>/usr</div><div>/usr/bin</div><div>/usr/bin/ANTS</div>
<div>/usr/bin/WarpImageMultiTransform</div><div>/usr/lib</div><div>/usr/lib/ants</div><div>/usr/lib/ants/ANTS</div><div>/usr/lib/ants/ANTSAverage2DAffine.sh</div><div>/usr/lib/ants/ANTSAverage3DAffine.sh</div><div>/usr/lib/ants/ANTSIntegrateVectorField</div>
<div>/usr/lib/ants/ANTSJacobian</div><div>/usr/lib/ants/ANTSUseDeformationFieldToGetAffineTransform</div><div>/usr/lib/ants/ANTSUseLandmarkImagesToGetAffineTransform</div><div>/usr/lib/ants/ANTSpexec.sh</div><div>/usr/lib/ants/AverageImages</div>
<div>/usr/lib/ants/AverageTensorImages</div><div>/usr/lib/ants/ClusterImageStatistics</div><div>/usr/lib/ants/ComposeMultiTransform</div><div>/usr/lib/ants/ConvertImagePixelType</div><div>/usr/lib/ants/ConvertScalarImageToRGB</div>
<div>/usr/lib/ants/ConvertToJpg</div><div>/usr/lib/ants/CopyImageHeaderInformation</div><div>/usr/lib/ants/CreateWarpedGridImage</div><div>/usr/lib/ants/ExtractSliceFromImage</div><div>/usr/lib/ants/ImageCompare</div><div>
/usr/lib/ants/ImageMath</div><div>/usr/lib/ants/ImageSetStatistics</div><div>/usr/lib/ants/KellySlater</div><div>/usr/lib/ants/LabelClustersUniquely</div><div>/usr/lib/ants/LabelOverlapMeasures</div><div>/usr/lib/ants/LaplacianThickness</div>
<div>/usr/lib/ants/MeasureImageSimilarity</div><div>/usr/lib/ants/MeasureMinMaxMean</div><div>/usr/lib/ants/MemoryTest</div><div>/usr/lib/ants/MultiplyImages</div><div>/usr/lib/ants/N3BiasFieldCorrection</div><div>/usr/lib/ants/N4BiasFieldCorrection</div>
<div>/usr/lib/ants/PermuteFlipImageOrientationAxes</div><div>/usr/lib/ants/PrintHeader</div><div>/usr/lib/ants/ReorientTensorImage</div><div>/usr/lib/ants/ResampleImage</div><div>/usr/lib/ants/ResampleImageBySpacing</div>
<div>/usr/lib/ants/ResetDirection</div><div>/usr/lib/ants/SetDirectionByMatrix</div><div>/usr/lib/ants/SetOrigin</div><div>/usr/lib/ants/SetSpacing</div><div>/usr/lib/ants/SmoothImage</div><div>/usr/lib/ants/StackSlices</div>
<div>/usr/lib/ants/SurfaceBasedSmoothing</div><div>/usr/lib/ants/SurfaceCurvature</div><div>/usr/lib/ants/ThresholdImage</div><div>/usr/lib/ants/TileImages</div><div>/usr/lib/ants/WarpImageMultiTransform</div><div>/usr/lib/ants/WarpTensorImageMultiTransform</div>
<div>/usr/lib/ants/WarpTimeSeriesImageMultiTransform</div><div>/usr/lib/ants/ants.sh</div><div>/usr/lib/ants/antsIntroduction.sh</div><div>/usr/lib/ants/antsaffine.sh</div><div>/usr/lib/ants/antsbashstats.sh</div><div>/usr/lib/ants/antsdeformationmag.sh</div>
<div>/usr/lib/ants/antsqsub.sh</div><div>/usr/lib/ants/antswithdt.sh</div><div>/usr/lib/ants/buildtemplateparallel.sh</div><div>/usr/lib/ants/geodesicinterpolation.sh</div><div>/usr/lib/ants/guidedregistration.sh</div><div>
/usr/lib/ants/landmarkmatch.sh</div><div>/usr/lib/ants/lohmann.sh</div><div>/usr/lib/ants/optimalsmooth.sh</div><div>/usr/lib/ants/phantomstudy.sh</div><div>/usr/lib/ants/<a href="http://registerimages.pl">registerimages.pl</a></div>
<div>/usr/lib/ants/<a href="http://runprogramonimageset.pl">runprogramonimageset.pl</a></div><div>/usr/lib/ants/shapeupdatetotemplate.sh</div><div>/usr/lib/ants/submitexperimentalbuild.sh</div><div>/usr/lib/ants/sygnccavg.sh</div>
<div>/usr/lib/ants/thickstudy.sh</div><div>/usr/lib/ants/waitForSGEQJobs.pl</div><div>/usr/lib/ants/<a href="http://warpimages.pl">warpimages.pl</a></div><div>/usr/lib/ants/<a href="http://weightedaverage.pl">weightedaverage.pl</a></div>
<div>/usr/lib/ants/weightedaverage.sh</div><div>/usr/share</div><div>/usr/share/doc</div><div>/usr/share/doc/ants</div><div>/usr/share/doc/ants/README.Debian</div><div>/usr/share/doc/ants/README.txt.gz</div><div>/usr/share/doc/ants/changelog.Debian.gz</div>
<div>/usr/share/doc/ants/copyright</div><div>/usr/share/lintian</div><div>/usr/share/lintian/overrides</div><div>/usr/share/lintian/overrides/ants</div><div>/usr/share/man</div><div>/usr/share/man/man1</div><div>/usr/share/man/man1/ANTS.1.gz</div>
<div>/usr/share/man/man1/ANTSIntegrateVectorField.1.gz</div><div>/usr/share/man/man1/ANTSJacobian.1.gz</div><div>/usr/share/man/man1/ANTSUseDeformationFieldToGetAffineTransform.1.gz</div><div>/usr/share/man/man1/ANTSUseLandmarkImagesToGetAffineTransform.1.gz</div>
<div>/usr/share/man/man1/AverageImages.1.gz</div><div>/usr/share/man/man1/AverageTensorImages.1.gz</div><div>/usr/share/man/man1/ClusterImageStatistics.1.gz</div><div>/usr/share/man/man1/ComposeMultiTransform.1.gz</div><div>
/usr/share/man/man1/ConvertImagePixelType.1.gz</div><div>/usr/share/man/man1/ConvertScalarImageToRGB.1.gz</div><div>/usr/share/man/man1/ConvertToJpg.1.gz</div><div>/usr/share/man/man1/CopyImageHeaderInformation.1.gz</div>
<div>/usr/share/man/man1/CreateWarpedGridImage.1.gz</div><div>/usr/share/man/man1/ExtractSliceFromImage.1.gz</div><div>/usr/share/man/man1/ImageCompare.1.gz</div><div>/usr/share/man/man1/ImageMath.1.gz</div><div>/usr/share/man/man1/ImageSetStatistics.1.gz</div>
<div>/usr/share/man/man1/KellySlater.1.gz</div><div>/usr/share/man/man1/LabelClustersUniquely.1.gz</div><div>/usr/share/man/man1/LabelOverlapMeasures.1.gz</div><div>/usr/share/man/man1/LaplacianThickness.1.gz</div><div>/usr/share/man/man1/MeasureImageSimilarity.1.gz</div>
<div>/usr/share/man/man1/MeasureMinMaxMean.1.gz</div><div>/usr/share/man/man1/MemoryTest.1.gz</div><div>/usr/share/man/man1/MultiplyImages.1.gz</div><div>/usr/share/man/man1/N3BiasFieldCorrection.1.gz</div><div>/usr/share/man/man1/N4BiasFieldCorrection.1.gz</div>
<div>/usr/share/man/man1/PermuteFlipImageOrientationAxes.1.gz</div><div>/usr/share/man/man1/PrintHeader.1.gz</div><div>/usr/share/man/man1/ReorientTensorImage.1.gz</div><div>/usr/share/man/man1/ResampleImage.1.gz</div><div>
/usr/share/man/man1/ResampleImageBySpacing.1.gz</div><div>/usr/share/man/man1/ResetDirection.1.gz</div><div>/usr/share/man/man1/SetDirectionByMatrix.1.gz</div><div>/usr/share/man/man1/SetOrigin.1.gz</div><div>/usr/share/man/man1/SetSpacing.1.gz</div>
<div>/usr/share/man/man1/SmoothImage.1.gz</div><div>/usr/share/man/man1/StackSlices.1.gz</div><div>/usr/share/man/man1/SurfaceBasedSmoothing.1.gz</div><div>/usr/share/man/man1/SurfaceCurvature.1.gz</div><div>/usr/share/man/man1/ThresholdImage.1.gz</div>
<div>/usr/share/man/man1/TileImages.1.gz</div><div>/usr/share/man/man1/WarpImageMultiTransform.1.gz</div><div>/usr/share/man/man1/WarpTensorImageMultiTransform.1.gz</div><div>/usr/share/man/man1/WarpTimeSeriesImageMultiTransform.1.gz</div>
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