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</o:shapelayout></xml><![endif]--></head><body lang=DE link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='color:#1F497D'>Hi again,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D'>I now found the reason for my problem. (it always takes a long time until I find time to revisit such problems). I just post my finding for the case that anyone else experiences the same problem and searches for a solution. The crude behavior (wrong number of dicom files found) is only observable when the dicom files are stored on a samba share. When converting locals files, everything works on Ubuntu as fine as on other distributions. It’s independent of the dcm2nii version (true for NeuroDebian and Centos Version) . Seems that it’s neither a direct dcm2nii problem nor a NeurDebian version problem but an interaction between dcm2nii and Ubuntu. Both, dinifti and mriconvert find the correct number of files (and dinifti works with IMA).<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='color:#1F497D'>Best, Peter<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>Von:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Michael Hanke [mailto:michael.hanke@gmail.com] <br><b>Gesendet:</b> Donnerstag, 28. März 2013 11:56<br><b>An:</b> Kirsch, Peter<br><b>Cc:</b> neurodebian-users@lists.alioth.debian.org<br><b>Betreff:</b> Re: [Neurodebian-users] Problem with dcm2nii<o:p></o:p></span></p></div><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal>Hi,<o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal>On Thu, Mar 28, 2013 at 11:39 AM, Kirsch, Peter <<a href="mailto:Peter.Kirsch@zi-mannheim.de" target="_blank">Peter.Kirsch@zi-mannheim.de</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>Sorry for not answering, I did not receive your replies (Anyway, thanks for the fast response). I now subscribed to the list…</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>It might indeed be the case that I replaced the May 5 version with the December 12 version from my CentOS machine (I thought I did it the other way around) but in any case: the behavior did not differ at all.</span><o:p></o:p></p></div></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Does that mean you are seeing the problematic behavior with the NeuroDebian version from May _and_<o:p></o:p></p></div><div><p class=MsoNormal>with a Centos version from December on the same Ubuntu machine, but it works on Centos?<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>This would be surprising, as dcm2nii is self-contained and doesn't use any system libs:<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal>% ldd /usr/bin/dcm2nii<o:p></o:p></p></div><div><p class=MsoNormal> not a dynamic executable<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>If you can confirm this, we might need to look for reasons beyond the scope of dcm2nii.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>As a sidenote: what happens if you run 'dinifti' from the 'dicomnifiti' package on the files?<o:p></o:p></p></div><div><p class=MsoNormal>Not sure if it handles IMA files, but it should work fine for DICOMs<o:p></o:p></p></div></div></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Michael<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><p class=MsoNormal>-- <o:p></o:p></p><div><div><p class=MsoNormal>Michael Hanke<o:p></o:p></p></div><div><p class=MsoNormal><a href="http://mih.voxindeserto.de" target="_blank">http://mih.voxindeserto.de</a><o:p></o:p></p></div><div><div><p class=MsoNormal><o:p> </o:p></p></div></div></div></div></div></div></body></html>