<div dir="ltr">Hi Yaroslav,<div><br></div><div>Thanks for the quick response. I will let you know how the testing goes as soon as the update hits.</div><div><br></div><div>best,</div><div>Stephen</div><div><br><div class="gmail_extra">
<br clear="all"><div><div dir="ltr">--<br>voice and txt: 352-358-1110<br></div></div>
<br><br><div class="gmail_quote">On Mon, Sep 2, 2013 at 8:30 PM, Yaroslav Halchenko <span dir="ltr"><<a href="mailto:debian@onerussian.com" target="_blank">debian@onerussian.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
Hi Stephen,<br>
<br>
A friend of ours already emailed us a similar report and we nearly called him a<br>
lier since "it works for us" (on Debian systems) and he did not provide details<br>
about his system. Your report had all relevant information to reproduce this<br>
issue specific to some elderly Ubuntus -- thanks!<br>
<br>
Meanwhile you could try to mitigate this by prepending calls to those commands<br>
with<br>
<br>
LD_PRELOAD=/usr/lib/afni/lib/libafni_warp.so<br>
<br>
which should provide that symbol and which librickr.so should have been<br>
linked against. We will provide fixed build tomorrow or day after the latest.<br>
<br>
Cheers,<br>
<div><div class="h5"><br>
On Mon, 02 Sep 2013, Stephen Towler wrote:<br>
<br>
> Hello neurodebian uesrs,<br>
> Anyone else having problems with most recent afni binaries on 64-bit<br>
> platforms? 3dcalc and 3dinfo (and maybe others) are producing error<br>
> "symbol lookup error: /usr/lib/afni/lib/librickr.so: undefined symbol:<br>
> AFNI_dataset_slice"<br>
> Details:�<br>
> ----------- active afni version and variables: -----------<br>
> Version AFNI_2011_12_21_1014<br>
> [[Precompiled binary =Debian-i686-1-gnu: Aug 31 2013]]<br>
> The command 'afni' will launch: /usr/bin/afni<br>
> The command '3dinfo' will launch: /usr/lib/afni/bin/3dinfo<br>
> AFNI environmental variables, if any exist:<br>
> AFNI_PLUGINPATH=/usr/lib/afni/plugins<br>
> AFNI_TTATLAS_DATASET=/usr/share/afni/atlases<br>
> AFNI_IMSAVE_WARNINGS=NO<br>
> AFNI_MODELPATH=/usr/lib/afni/models<br>
> ----------------------------------------------------------<br>
> # at least two commands give the same error:<br>
> stowler-local@larry:~$ 3dcalc<br>
> 3dcalc: symbol lookup error: /usr/lib/afni/lib/librickr.so: undefined<br>
> symbol: AFNI_dataset_slice<br>
> stowler-local@larry:~$ 3dinfo<br>
> 3dinfo: symbol lookup error: /usr/lib/afni/lib/librickr.so: undefined<br>
> symbol: AFNI_dataset_slice<br>
> # doesn't look like there's version confusion, as there's only one<br>
> librickr.so:<br>
> stowler-local@larry:~$ find /usr/lib/afni | grep librickr<br>
> /usr/lib/afni/lib/librickr.so<br>
> # host and library info to help the maintainers troubleshoot:<br>
> stowler-local@larry:~$ uname -a<br>
</div></div>> Linux [1]<a href="http://larry.birc.emory.edu" target="_blank">larry.birc.emory.edu</a> 3.2.0-52-generic-pae #78-Ubuntu SMP Fri Jul<br>
<div class="im">> 26 16:43:19 UTC 2013 i686 i686 i386 GNU/Linux<br>
> stowler-local@larry:~$ file /usr/lib/afni/lib/librickr.so<br>
> /usr/lib/afni/lib/librickr.so: ELF 32-bit LSB shared object, Intel 80386,<br>
> version 1 (SYSV), dynamically linked,<br>
> BuildID[sha1]=0xf3dbd827219f30b6bf68849be2e22890b20df8fe, stripped<br>
> stowler-local@larry:~$ cat<br>
> /etc/apt/sources.list.d/neurodebian.sources.list�<br>
</div>> deb [2]<a href="http://masi.vuse.vanderbilt.edu/neurodebian" target="_blank">http://masi.vuse.vanderbilt.edu/neurodebian</a> data main contrib<br>
> non-free<br>
> #deb-src [3]<a href="http://masi.vuse.vanderbilt.edu/neurodebian" target="_blank">http://masi.vuse.vanderbilt.edu/neurodebian</a> data main contrib<br>
> non-free<br>
> deb [4]<a href="http://masi.vuse.vanderbilt.edu/neurodebian" target="_blank">http://masi.vuse.vanderbilt.edu/neurodebian</a> precise main contrib<br>
> non-free<br>
> #deb-src [5]<a href="http://masi.vuse.vanderbilt.edu/neurodebian" target="_blank">http://masi.vuse.vanderbilt.edu/neurodebian</a> precise main<br>
<div class="im">> contrib non-free<br>
> Thanks,<br>
> Stephen<br>
--<br>
</div>Yaroslav O. Halchenko, Ph.D.<br>
<a href="http://neuro.debian.net" target="_blank">http://neuro.debian.net</a> <a href="http://www.pymvpa.org" target="_blank">http://www.pymvpa.org</a> <a href="http://www.fail2ban.org" target="_blank">http://www.fail2ban.org</a><br>
Senior Research Associate, Psychological and Brain Sciences Dept.<br>
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755<br>
Phone: <a href="tel:%2B1%20%28603%29%20646-9834" value="+16036469834">+1 (603) 646-9834</a> Fax: <a href="tel:%2B1%20%28603%29%20646-1419" value="+16036461419">+1 (603) 646-1419</a><br>
WWW: <a href="http://www.linkedin.com/in/yarik" target="_blank">http://www.linkedin.com/in/yarik</a><br>
</blockquote></div><br></div></div></div>