[pkg-bioc] CVS %p

CVS User smoe-guest smoe-guest at alioth.debian.org
Wed May 30 13:55:05 UTC 2007


Update of /cvsroot/pkg-bioc/tools
In directory alioth:/tmp/cvs-serv4597

Modified Files:
	CRAN2DEB.pm cran2deb.pl r_pkg_prepare.sh r_pkg_update.pl 
	r_pkg_upload.pl 
Log Message:
All I wanted to do was to get the biocViews package packaged. I found some
problems here and there. An issue also seems to be with out apt-cache
that does not distinguish for us between referenced packages and installed
packages. I did not investigate this further but added a --rebuildall flag,
which might also come handy once we have more packages in the main distribution.

The alreadyinDebianCRAN|BIOC|OMEGAHAT arrays became hashes in order to ease
the back and forth between source package names and the Debian package names. It also eliminates the 'grep's on the arrays which I never liked so much. I now learned about the AUTOVARS though
and had to recognize that we do not have the case for the source package names
at that point. I hence transitioned the "repositoryOf" hash to also accept
lowercase entries.  The reference to the XML package was not followed correctly
because of that, for example, and possibly also others.

Some other issues here and there ... biocViews is uploaded the shared archive.

Many greetings

Steffen







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