[pymvpa] ‘LinearNuSVMC’ is not defined error with smlr.py

[Jo Etzel]

> But before that: could you run this in python
> 
>   >>> import mvpa
>   >>> mvpa.base.externals.testAllDependencies(force=True)
>   >>> mvpa.cfg
> 
> and post the output. This will tell us what pymvpa thinks about the
> external dependencies.
> 
> Thanks,
> 
> Michael
> 

Here's the full output:


Python 2.5.4 (r254:67916, Dec 23 2008, 15:10:54) [MSC v.1310 32 bit 
(Intel)] on win32
Type "copyright", "credits" or "license()" for more information.

     ****************************************************************
     Personal firewall software may warn about the connection IDLE
     makes to its subprocess using this computer's internal loopback
     interface.  This connection is not visible on any external
     interface and no data is sent to or received from the Internet.
     ****************************************************************

IDLE 1.2.4
 >>> import mvpa
 >>> mvpa.base.externals.testAllDependencies(force=True)
WARNING: libsvm verbosity control is not available.
  * Please note: warnings are printed only once, but underlying problem 
might occur many times *

Warning (from warnings module):
   File "C:\Python25\lib\site-packages\nifti\nifticlib.py", line 15
     warn("This module has been renamed to 'nifti.clib'. This redirect 
will be removed with PyNIfTI 1.0.", DeprecationWarning)
DeprecationWarning: This module has been renamed to 'nifti.clib'. This 
redirect will be removed with PyNIfTI 1.0.
 >>> mvpa.cfg
[externals]
have griddata = no
have good scipy.stats.rdist = yes
have pywt = no
have lxml = no
have running ipython env = no
have ctypes = yes
have sg_fixedcachesize = no
have nifti >= 0.20081017.1 = no
have shogun.mpd = no
have pywt wp reconstruct fixed = no
have scipy = yes
have openopt = no
have libsvm = no
have sg >= 0.6.4 = no
have weave = no
have atlas_fsl = no
have mdp = no
have hcluster = no
have libsvm verbosity control = no
have shogun.svrlight = no
have rpy = no
have lars = no
have shogun = no
have nifti = yes
have atlas_pymvpa = no
have cpickle = yes
have pywt wp reconstruct = no
have pylab = yes
have shogun.lightsvm = no
have gzip = yes

[general]
verbose = 1

 >>>