[pymvpa] Q: Time-offset of category labels in Haxby 2001 dataset. Was this ever properly resolved?

MS Al-Rawi rawi707 at yahoo.com
Thu Mar 10 15:51:11 UTC 2011


Thank you all for the discussion...

http://data.pymvpa.org/datasets/haxby2001/README.rst .....says
Data for the run (chunk) 8 of subject 5 was corrupted


8 -> 9

Regards,
Rawi



----- Original Message ----
> From: Yaroslav Halchenko <debian at onerussian.com>
> To: pkg-exppsy-pymvpa at lists.alioth.debian.org
> Sent: Thu, March 10, 2011 3:30:20 PM
> Subject: Re: [pymvpa] Q: Time-offset of category labels in Haxby 2001 dataset. 

>Was this ever properly resolved?
> 
> 
> On Thu, 10 Mar 2011, Rajeev Raizada wrote:
> > It would definitely be  worth adding to the docs and README.txt
> > a statement saying that the  labels do not require any additional 
>time-offset,
> > such that any TR with  the label, e.g. "shoes", attached to it
> > can be understood as containing  evoked-HRF responses to shoes.
> > (Just saying "the labels do not require  any additional time-offset",
> > but without any further explanation, might  not be clear to readers
> > who have not seen this discussion in the  list-archives).
> 
> would you mind sending a patch (or modified version) with  your  wording
> for
> http://data.pymvpa.org/datasets/haxby2001/README.rst
> ?
> 
> or  may be even -- creating your clone of PyMVPA on github, getting it
> locally,  changing doc/source/datadb/haxby2001.rst, committing, pushing
> and submitting  'pull request' so we would simply merge it
> 
> Although lengthier process to  start but
> - you will bare the authorship for this contribution as the  committer
> - it would streamline any future changes you might like to  introduce
>   into PyMVPA
> 
> > Another piece of info that can be  gleaned from this list's archives
> > but which is also currently not in the  docs is that the 9th run of subj5
> > contains only the label "rest", due to  excessive head motion on that run.
> 
> We have updated README.rst some time  ago but somehow update was
> overriden... I have reuploaded updated version  with the note on 9th run
> of subj5
> 
> > Thanks again for putting this  dataset online,
> > and for your input on helping to clarify the labels  issue.
> 
> you are welcome!
> -- 
> =------------------------------------------------------------------=
> Keep  in touch                                     www.onerussian.com
> Yaroslav  Halchenko                www.ohloh.net/accounts/yarikoptic
> 
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