<div>Christian,<br>I am not an expert, but I managed to install PYMVPA on my Snow Leopard by doing<br></div><div><span style="font-family: 'DejaVu Sans','Droid Sans',Verdana,sans-serif; font-size: 14px; color: rgb(68, 68, 68); line-height: 19px;"><pre style="border: 1px solid rgb(221, 221, 221); padding: 0.25em; background-color: rgb(246, 246, 246); color: rgb(102, 102, 102); font-family: 'DejaVu Sans Mono','Lucida Console',monospace; font-size: 11px; line-height: 1.25; white-space: pre-wrap;">
sudo port install py26-pil py26-numpy py26-scipy py26-ipython py26-matplotlib +cairo+latex+tkinter py26-pyobjc2-cocoa python_select<br>sudo python_select python26</pre></span></div><div>And then <br></div><span style="font-family: 'Lucida Grande','Lucida Sans Unicode',Geneva,Verdana,sans-serif; font-size: 14px; line-height: 21px;"><pre style="border: 1px solid rgb(204, 204, 204); padding: 0.5em; font-family: Consolas,'Deja Vu Sans Mono','Bitstream Vera Sans Mono',monospace; font-size: 0.95em; letter-spacing: 0.015em; background-color: rgb(248, 248, 248); line-height: 15px;">
sudo port install py26-pymvpa +scipy +pynifti +hcluster +libsvm <span style="font-family: arial,'Lucida Sans Unicode',Geneva,Verdana,sans-serif; font-size: small; line-height: normal; white-space: normal;"><span style="font-family: Consolas,'Deja Vu Sans Mono','Bitstream Vera Sans Mono',monospace; font-size: 13px; line-height: 15px; white-space: pre;">+matplotlib +pywavelet</span> </span></pre>
</span>Although when I tried to install PYMVPA on Leopard, I encountered the same problem as you (the installation involves py26 even though I explicitly aske it to involve py25).<br><br>Good luck,<br>Anna.<br><br><div class="gmail_quote">
On Tue, Dec 8, 2009 at 4:36 AM, Christian Fiebach <span dir="ltr"><<a href="mailto:fiebach@uni-heidelberg.de">fiebach@uni-heidelberg.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
This problem is not existing any more - installation proceeded to the point that<br>
manual installation of Shogun is asked for.<br>
<br>
I would be interested in knowing why the installation seems to involve both python25<br>
and python26 - is this correct?<br>
<br>
Does it make sense to install (as did a previous post on this list) the whole package<br>
based on python26?<br>
<br>
Thanks a lot in advance! Christian<br>
<br>
Am 05.12.2009 um 10:17 schrieb <a href="mailto:Fiebach@uni-heidelberg.de" target="_blank">Fiebach@uni-heidelberg.de</a>:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Dear pyMVPA-experts,<br>
<br>
I am encountering problems installing pyMVPA using MacPorts on<br>
a Macbook Pro (15') with Mac OS X snow leopard. The output is<br>
as follows, the error message is somehow not informative enough<br>
for me to solve the problem on my own.<br>
(In the first call of the install command, I pasted it from the<br>
install site and the last two commands (+matplotlib and +pywavelet)<br>
were pasted into a separate line. I don't know if the incomplete<br>
call without matplotlib and pywavelet is the source of the error<br>
or whether the problem happens somewhere else.)<br>
<br>
I am very thankful for your help in advance!!! Christian<br>
<br>
<br>
Christian-Fiebachs-MacBook-Pro-15:~ fiebach$ sudo port install py25-pymvpa +scipy +pynifti +hcluster +libsvm +matplotlib +pywavelet<br>
---> Computing dependencies for py25-pymvpa<br>
---> Fetching gzip<br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/gzip" target="_blank">http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://mirrors.kernel.org/gnu/gzip" target="_blank">http://mirrors.kernel.org/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gzip" target="_blank">http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.funet.fi/pub/gnu/prep/gzip" target="_blank">ftp://ftp.funet.fi/pub/gnu/prep/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.kddlabs.co.jp/pub/gnu/gnu/gzip" target="_blank">ftp://ftp.kddlabs.co.jp/pub/gnu/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.kddlabs.co.jp/pub/gnu/old-gnu/gzip" target="_blank">ftp://ftp.kddlabs.co.jp/pub/gnu/old-gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.dti.ad.jp/pub/GNU/gzip" target="_blank">ftp://ftp.dti.ad.jp/pub/GNU/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.informatik.hu-berlin.de/pub/gnu/gzip" target="_blank">ftp://ftp.informatik.hu-berlin.de/pub/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.lip6.fr/pub/gnu/gzip" target="_blank">ftp://ftp.lip6.fr/pub/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.chg.ru/pub/gnu/gzip" target="_blank">ftp://ftp.chg.ru/pub/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://mirror.internode.on.net/pub/gnu/gzip" target="_blank">http://mirror.internode.on.net/pub/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://mirror.pacific.net.au/pub1/gnu/gnu/gzip" target="_blank">http://mirror.pacific.net.au/pub1/gnu/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://mirror.aarnet.edu.au/pub/GNU/gzip" target="_blank">http://mirror.aarnet.edu.au/pub/GNU/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.unicamp.br/pub/gnu/gzip" target="_blank">ftp://ftp.unicamp.br/pub/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.gnu.org/gnu/gzip" target="_blank">ftp://ftp.gnu.org/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://ftp.gnu.org/gnu/gzip" target="_blank">http://ftp.gnu.org/gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="ftp://ftp.gnu.org/old-gnu/gzip" target="_blank">ftp://ftp.gnu.org/old-gnu/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://distfiles.macports.org/gzip" target="_blank">http://distfiles.macports.org/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://arn.se.distfiles.macports.org/gzip" target="_blank">http://arn.se.distfiles.macports.org/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://aarnet.au.distfiles.macports.org/pub/macports/mpdistfiles/gzip" target="_blank">http://aarnet.au.distfiles.macports.org/pub/macports/mpdistfiles/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://svn.macports.org/repository/macports/distfiles/gzip" target="_blank">http://svn.macports.org/repository/macports/distfiles/gzip</a><br>
---> Attempting to fetch gzip-1.3.12.tar.gz from <a href="http://svn.macports.org/repository/macports/distfiles/general/" target="_blank">http://svn.macports.org/repository/macports/distfiles/general/</a><br>
Error: Target org.macports.fetch returned: fetch failed<br>
Error: The following dependencies failed to build: py25-hcluster py25-numpy atlas gzip fftw-3 py25-nose py25-setuptools python25 db46 gdbm readline sqlite3 tk Xft2 fontconfig freetype xrender xorg-libX11 groff xorg-bigreqsproto xorg-inputproto xorg-kbproto xorg-libXau xorg-xproto xorg-libXdmcp xorg-util-macros xorg-xcmiscproto xorg-xextproto xorg-xf86bigfontproto xorg-xtrans xorg-renderproto tcl xorg-libXScrnSaver xorg-libXext xorg-scrnsaverproto py25-matplotlib libpng py25-configobj py25-dateutil py25-tz py25-pyobjc-cocoa py25-pyobjc py25-py2app py25-altgraph py25-bdist_mpkg py25-macholib py25-modulegraph py25-pyobjc2 py25-pyobjc2-cocoa py25-pynifti nifticlib cmake libidn swig-python bison m4 gsed python_select swig py25-pywavelets py25-scipy SuiteSparse metis shogun glpk py26-numpy py26-nose py26-setuptools python26<br>
Error: Status 1 encountered during processing.<br>
Christian-Fiebachs-MacBook-Pro-15:~ fiebach$<br>
<br>
<br>
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</blockquote>
<br>
<br>
<br>
<br>
-------------------------------------------------------------<br>
Prof. Dr. Christian Fiebach<br>
Dept. of Psychology, University of Heidelberg<br>
Hauptstr. 47-51; D-69117 Germany<br>
Tel.: ++49-(0)6221-547371<br>
<a href="http://fimlab.uni-hd.de" target="_blank">http://fimlab.uni-hd.de</a><br>
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