<br><br><div class="gmail_quote">2011/2/10 Yaroslav Halchenko <span dir="ltr"><<a href="mailto:debian@onerussian.com">debian@onerussian.com</a>></span><br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Ha -- Thanks Patrik for chiming in, and sorry for not buzzing you<br>
immediately as soon as GNBSearchlight was fixed up in 0.6.<br>
<div class="im"><br></div></blockquote><div>No worries! You are quite active in the mailing list, must take a lot of time. <br></div><div> </div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div class="im">
> I have installed your 0.6 dev version to try it out. Though I from time to<br>
> time get a bit perplex from the new parameter names etc, I have managed to<br>
> get fairly familiar with it.<br>
<br>
</div>sorry and thanks for digging into it ;)<br>
<div class="im"><br></div></blockquote><div>It seems to be a good way of being forced to learn Python.<br> </div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div class="im">
> I now wanted to, just for fun, try the GNB searchlight, but fail.<br>
</div>> >...<<br>
<div class="im">> What is wrong here? I guess the 'generator' is not whats expected(?)<br>
</div>everything looks cool in your example... it runs for me without crashing<br>
(although a bit longer than I expected, had to wait nearly a few<br>
minutes) and results in<br>
<br>
<Dataset: 2x39912@float64, <a: mapper>><br>
<br>
So, the question is -- what is your mvpa version of 0.6? up to date<br>
master? mine was<br>
<br>
$> git describe<br>
upstream/0.6.0.dev-111-gbe82724<br>
0.60<br></blockquote><div><br>In Synaptic it says 0.6.0~dev-69-g7afe4f7-1~nd60+1<br>both installed and latest. Is there another repository?<br><br></div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
if it fails with an up-to-date version -- what is the failure message?<br>
<br></blockquote><div>/home/brain/Desktop/Data/tutorial_data/tutorial.py in <module>()<br> 16 gnbsl = sphere_gnbsearchlight(clf, gen)#, postproc=mean_sample())<br> 17 <br>---> 18 res = gnbsl(ds)<br> 19 <br>
20 <br><br>/usr/lib/pymodules/python2.6/mvpa/base/learner.pyc in __call__(self, ds)<br> 220 "used and auto training is disabled."<br> 221 % str(self))<br>
--> 222 return super(Learner, self).__call__(ds)<br> 223 <br> 224 <br><br>/usr/lib/pymodules/python2.6/mvpa/base/node.pyc in __call__(self, ds)<br> 67 """<br> 68 self._precall(ds)<br>
---> 69 result = self._call(ds)<br> 70 result = self._postcall(ds, result)<br> 71 return result<br><br>/usr/lib/pymodules/python2.6/mvpa/measures/searchlight.pyc in _call(self, dataset)<br>
108 <br> 109 # pass to subclass<br><br>--> 110 results, roi_sizes = self._sl_call(dataset, roi_ids, nproc)<br> 111 <br> 112 if not roi_sizes is None:<br><br>/usr/lib/pymodules/python2.6/mvpa/measures/gnbsearchlight.py in _sl_call(self, dataset, roi_ids, nproc)<br>
281 # splitcfg just returns what to split into the other in terms<br><br> 282 # of chunks... and we need actual indicies<br><br>--> 283 if splitter.permute_attr is not None:<br>
284 raise NotImplementedError, \<br> 285 "Splitters which permute targets aren't supported here"<br><br>AttributeError: 'NFoldPartitioner' object has no attribute 'permute_attr'<br>
WARNING: Failure executing file: <tutorial.py><br><br>Thanks for helping out!<br><br><br><br> </div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
--<br>
.-.<br>
=------------------------------ /v\ ----------------------------=<br>
Keep in touch // \\ (yoh@|www.)<a href="http://onerussian.com" target="_blank">onerussian.com</a><br>
Yaroslav Halchenko /( )\ ICQ#: 60653192<br>
Linux User ^^-^^ [175555]<br>
<br>
<br>
<br>
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