Here is what I got after typing those two lines. <br><br><br>--------------------------------------------<br>Current date: 2011-03-04 10:24<br>PyMVPA:<br> Version: 0.4.5<br> Path: /usr/lib/pymodules/python2.6/mvpa/__init__.pyc<br>
Version control (GIT):<br> GIT information could not be obtained due "/usr/lib/pymodules/python2.6/mvpa/.. is not under GIT"<br>SYSTEM:<br> OS: posix Linux 2.6.32-27-generic #49-Ubuntu SMP Thu Dec 2 00:51:09 UTC 2010<br>
Distribution: Ubuntu/10.04/lucid<br>EXTERNALS:<br> Present: cPickle, ctypes, good scipy.stats.rv_discrete.ppf, griddata, gzip, libsvm, libsvm verbosity control, matplotlib, mdp, mdp ge 2.4, nifti, nifti ge 0.20090205.1, numpy, pylab, pylab plottable, pywt, pywt wp reconstruct, reportlab, running ipython env, scipy, sg ge 0.6.4, sg_fixedcachesize, shogun, shogun.krr, shogun.mpd<br>
Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, good scipy.stats.rdist, hcluster, lars, lxml, nose, openopt, pywt wp reconstruct fixed, rpy, shogun.lightsvm, shogun.svrlight, weave<br> Versions of critical externals:<br>
ctypes : 1.1.0<br> matplotlib : 0.99.1.1<br> nifti : 0.20100607.1<br> numpy : 1.3.0<br> pywt : 0.1.7<br> scipy : 0.7.0<br> shogun : v0.9.1_r4481_2009-11-16_10:14_<br> Matplotlib backend: TkAgg<br>
RUNTIME:<br> PyMVPA Environment Variables:<br> PYTHONPATH : ".:/jet/kimberg/pymvpa"<br> PyMVPA Runtime Configuration:<br> [externals]<br> have griddata = yes<br> have good scipy.stats.rdist = no<br>
have pylab plottable = yes<br> have pywt wp reconstruct = yes<br> have mdp = yes<br> have lxml = no<br> have running ipython env = yes<br> have sg_fixedcachesize = yes<br> have elasticnet = no<br> have shogun.mpd = yes<br>
have matplotlib = yes<br> have pywt wp reconstruct fixed = no<br> have scipy = yes<br> have reportlab = yes<br> have openopt = no<br> have libsvm = yes<br> have shogun.krr = yes<br> have nifti ge 0.20090205.1 = yes<br>
have nose = no<br> have weave = no<br> have atlas_fsl = no<br> have ctypes = yes<br> have hcluster = no<br> have sg ge 0.6.4 = yes<br> have good scipy.stats.rv_discrete.ppf = yes<br> have libsvm verbosity control = yes<br>
have mdp ge 2.4 = yes<br> have shogun.svrlight = no<br> have rpy = no<br> have shogun = yes<br> have glmnet = no<br> have lars = no<br> have nifti = yes<br> have atlas_pymvpa = no<br> have cpickle = yes<br> have numpy = yes<br>
have pylab = yes<br> have shogun.lightsvm = no<br> have pywt = yes<br> have gzip = yes<br> <br> [general]<br> verbose = 1<br> Process Information:<br> Name: ipython<br> State: R (running)<br> Tgid: 8101<br>
Pid: 8101<br> PPid: 8100<br> TracerPid: 0<br> Uid: 2136 2136 2136 2136<br> Gid: 1001 1001 1001 1001<br> FDSize: 64<br> Groups: 1001 <br> VmPeak: 393752 kB<br> VmSize: 393724 kB<br>
VmLck: 0 kB<br> VmHWM: 65644 kB<br> VmRSS: 65644 kB<br> VmData: 57724 kB<br> VmStk: 200 kB<br> VmExe: 2160 kB<br> VmLib: 63240 kB<br> VmPTE: 728 kB<br> Threads: 2<br>
SigQ: 0/16382<br> SigPnd: 0000000000000000<br> ShdPnd: 0000000000000000<br> SigBlk: 0000000000000000<br> SigIgn: 0000000001001000<br> SigCgt: 0000000180000002<br> CapInh: 0000000000000000<br> CapPrm: 0000000000000000<br>
CapEff: 0000000000000000<br> CapBnd: ffffffffffffffff<br> Cpus_allowed: ff<br> Cpus_allowed_list: 0-7<br> Mems_allowed: 00000000,00000001<br> Mems_allowed_list: 0<br> voluntary_ctxt_switches: 752<br>
nonvoluntary_ctxt_switches: 130<br><br><br>In [4]: can't invoke "event" command: application has been destroyed<br> while executing<br>"event generate $w <<ThemeChanged>>"<br> (procedure "ttk::ThemeChanged" line 6)<br>
invoked from within<br>"ttk::ThemeChanged"<br>invalid command name "71539040callit"<br> while executing<br>"71539040callit"<br> ("after" script)<br><br><br><br><div class="gmail_quote">
On Fri, Mar 4, 2011 at 10:22 AM, Yaroslav Halchenko <span dir="ltr"><<a href="mailto:debian@onerussian.com">debian@onerussian.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
no problem -- start python, type<br>
<br>
import mvpa<br>
mvpa.wtf()<br>
<br>
send me the output -- better to the mailing list<br>
<br>
cheers,<br>
<div class="im"><br>
On Fri, 04 Mar 2011, Glen Lee wrote:<br>
<br>
> Yes. That's the tutorial that I downloaded.<br>
> I've tried mvpa.wtf(), but nothing happened.<br>
> Where should I type? in the shell or in the ipython?<br>
> Sorry, I'm also novice for linux & python.<br>
<br>
> On Thu, Mar 3, 2011 at 9:30 PM, Yaroslav Halchenko<br>
</div><div class="im">> <[1]<a href="mailto:debian@onerussian.com">debian@onerussian.com</a>> wrote:<br>
<br>
</div><div class="im">> and what tutorial version do you use?<br>
> this one?<br>
</div>> [2]<a href="http://data.pymvpa.org/datasets/tutorial_data/tutorial_data-0.2.t" target="_blank">http://data.pymvpa.org/datasets/tutorial_data/tutorial_data-0.2.t</a><br>
<div class="im">> ar.gz<br>
> still, just to make sure (if it is the correct tutorial):<br>
> what is the output of mvpa.wtf()?<br>
<br>
> On Thu, 03 Mar 2011, Glen Lee wrote:<br>
<br>
> > Hi Yarik,<br>
> > It's the most recent version 0.6.<br>
> > Where can I cget the tutorial for this version?<br>
> > On Thu, Mar 3, 2011 at 7:14 PM, Yaroslav Halchenko<br>
<br>
</div><div><div></div><div class="h5">> > <[1][3]<a href="mailto:debian@onerussian.com">debian@onerussian.com</a>> wrote:<br>
> > what version of PyMVPA do you have available<br>
> > just provide output of<br>
> > mvpa.wtf()<br>
> > to possibly eliminate other questions.<br>
> > if it is PyMVPA 0.4.x -- then it is the 'stable' one, and the<br>
> > tutorial was crafted for the yet-to-be-released 0.5->0.6 series,<br>
> so<br>
> > you<br>
> > would need to get that one<br>
> > On Thu, 03 Mar 2011, Glen Lee wrote:<br>
> > > Hello,<br>
> > > Thanks for your answer for the previous inquiry.<br>
> > > I'm stuck again in the very next command of the tutorial page<br>
> and<br>
> > again<br>
> > > have no clue about this error.<br>
> > > Your help would be appreciated.<br>
> > > -Glen<br>
> > > In [3]: ds=get_haxby2001_data()<br>
> > > ------------------------------<br>
> > > ---------------------------------------------<br>
> > > NameError Traceback (most<br>
> recent<br>
> > call<br>
> > > last)<br>
> > > /home/Glen/Downloads/tutorial_data/<ipython console> in<br>
> <module>()<br>
> > > /home/Glen/Downloads/tutorial_data/tutorial_lib.pyc in<br>
> > > get_haxby2001_data(path, roi)<br>
> > > 42 def get_haxby2001_data(path=None, roi='vt'):<br>
> > > 43 if path is None:<br>
> > > ---> 44 ds = get_raw_haxby2001_data(roi=roi)<br>
> > > 45 else:<br>
> > > 46 ds = get_raw_haxby2001_data(path, roi=roi)<br>
> > > /home/Glen/Downloads/tutorial_data/tutorial_lib.pyc in<br>
> > > get_raw_haxby2001_data(path, roi)<br>
> > > 37 return ds<br>
> > > 38 else:<br>
> > > ---> 39 return load_datadb_demo_blockfmri(path=path,<br>
> > roi=roi)<br>
> > > 40<br>
> > > 41<br>
> > > NameError: global name 'load_datadb_demo_blockfmri' is not<br>
> defined<br>
> > > _______________________________________________<br>
> > > Pkg-ExpPsy-PyMVPA mailing list<br>
<br>
</div></div>> > > [2][4]<a href="mailto:Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org">Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org</a><br>
<br>
> [3][5]<a href="http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pym" target="_blank">http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pym</a><br>
<div><div></div><div class="h5">> vpa<br>
--<br>
=------------------------------------------------------------------=<br>
Keep in touch <a href="http://www.onerussian.com" target="_blank">www.onerussian.com</a><br>
Yaroslav Halchenko <a href="http://www.ohloh.net/accounts/yarikoptic" target="_blank">www.ohloh.net/accounts/yarikoptic</a><br>
</div></div></blockquote></div><br>