<div dir="ltr"><div><div>Thank you for the quick reply, I clearly overlooked that!<br><br></div>Cheers,<br></div>Charlotte<br></div><div class="gmail_extra"><br><div class="gmail_quote">On 27 May 2015 at 13:00, <span dir="ltr"><<a href="mailto:pkg-exppsy-pymvpa-request@lists.alioth.debian.org" target="_blank">pkg-exppsy-pymvpa-request@lists.alioth.debian.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send Pkg-ExpPsy-PyMVPA mailing list submissions to<br>
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Today's Topics:<br>
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1. Re: RSA - PDistTargetSimilarity (Hang Yee Chan)<br>
2. Re: RSA - PDistTargetSimilarity (Yaroslav Halchenko)<br>
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----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Tue, 26 May 2015 14:11:21 +0200<br>
From: Hang Yee Chan <<a href="mailto:chan@rsm.nl">chan@rsm.nl</a>><br>
To: <<a href="mailto:pkg-exppsy-pymvpa@lists.alioth.debian.org">pkg-exppsy-pymvpa@lists.alioth.debian.org</a>><br>
Subject: Re: [pymvpa] RSA - PDistTargetSimilarity<br>
Message-ID:<br>
<CAJkZt+0ou_xEw5jnuDC1haaOQyRb-tSqKcWhi28j9het=<a href="mailto:7O8dQ@mail.gmail.com">7O8dQ@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi Charlotte<br>
<br>
You can use the scipy.spatial.distance.squareform function to convert<br>
to/from square form (6x6) and condensed form (1x15).<br>
<br>
Cheers<br>
Hang-yee<br>
PhD candidate<br>
Erasmus University<br>
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Message: 2<br>
Date: Tue, 26 May 2015 08:37:07 -0400<br>
From: Yaroslav Halchenko <<a href="mailto:debian@onerussian.com">debian@onerussian.com</a>><br>
To: Development and support of PyMVPA<br>
<<a href="mailto:pkg-exppsy-pymvpa@lists.alioth.debian.org">pkg-exppsy-pymvpa@lists.alioth.debian.org</a>><br>
Subject: Re: [pymvpa] RSA - PDistTargetSimilarity<br>
Message-ID: <<a href="mailto:20150526123707.GN17638@onerussian.com">20150526123707.GN17638@onerussian.com</a>><br>
Content-Type: text/plain; charset=utf-8<br>
<br>
<br>
On Tue, 26 May 2015, Charlotte Murphy wrote:<br>
> I realise this is because I have a vector vs. 6x6 matrix. I assume I need<br>
> to create a vector that reflects the off diagonal dissimilarity structure<br>
> for my input_model? If so, is there a simple way to do this?<br>
<br>
from scipy.spatial.distance import squareform<br>
<br>
?<br>
<br>
btw -- just in case -- have a look at<br>
<a href="http://www.pymvpa.org/examples/rsa_fmri.html" target="_blank">http://www.pymvpa.org/examples/rsa_fmri.html</a><br>
<br>
which shows typical usecases<br>
<br>
Cheers,<br>
--<br>
Yaroslav O. Halchenko, Ph.D.<br>
<a href="http://neuro.debian.net" target="_blank">http://neuro.debian.net</a> <a href="http://www.pymvpa.org" target="_blank">http://www.pymvpa.org</a> <a href="http://www.fail2ban.org" target="_blank">http://www.fail2ban.org</a><br>
Research Scientist, Psychological and Brain Sciences Dept.<br>
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755<br>
Phone: <a href="tel:%2B1%20%28603%29%20646-9834" value="+16036469834">+1 (603) 646-9834</a> Fax: <a href="tel:%2B1%20%28603%29%20646-1419" value="+16036461419">+1 (603) 646-1419</a><br>
WWW: <a href="http://www.linkedin.com/in/yarik" target="_blank">http://www.linkedin.com/in/yarik</a><br>
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End of Pkg-ExpPsy-PyMVPA Digest, Vol 87, Issue 8<br>
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</blockquote></div><br><br clear="all"><br>-- <br><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><font color="#888888">Charlotte Murphy</font><br style="color:rgb(136,136,136)"><span style="color:rgb(136,136,136)">PhD Student</span><br style="color:rgb(136,136,136)"><span style="color:rgb(136,136,136)">Department of Psychology</span><br style="color:rgb(136,136,136)"><span style="color:rgb(136,136,136)">University of York,</span><br style="color:rgb(136,136,136)"><span style="color:rgb(136,136,136)">Heslington, York, YO10 5DD, UK</span><br style="color:rgb(136,136,136)"><span style="color:rgb(136,136,136)">Email: cem552</span><span style="color:rgb(34,34,34);background:rgb(255,255,204)">@<a href="http://york.ac.uk" target="_blank">york.ac.uk</a></span><br style="color:rgb(136,136,136)"></div></div></div></div>
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