<div dir="ltr"><div class="gmail_default" style="font-family:garamond,serif;font-size:large;color:rgb(0,0,0)"><div class="gmail_default">Hi, I had trouble with macports, but was able to install all dependencias and <span class="">PyMVPA</span> via hombrew and pip </div><div class="gmail_default"><br></div><div class="gmail_default">this is my recipe in case you would like to try it out, it works on my Mac with el Capitan</div><div class="gmail_default"><br></div><div class="gmail_default">best</div><div class="gmail_default">david</div><div class="gmail_default"><div class="gmail_default">_________________________________________________________________<span style="white-space:pre-wrap"> </span><br></div><div class="gmail_default"># Install command line tools</div><div class="gmail_default"><br></div><div class="gmail_default">xcode-select --install </div><div class="gmail_default"><br></div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default"># Installing Brew</div><div class="gmail_default">/usr/bin/ruby -e "$(curl -fsSL <a href="https://raw.githubusercontent.com/Homebrew/install/master/install" target="_blank">https://raw.githubusercontent.com/Homebrew/install/master/install</a>)"</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default"># Set up some taps and update brew</div><div class="gmail_default">brew tap homebrew/science</div><div class="gmail_default">brew tap homebrew/python</div><div class="gmail_default">brew update && brew upgrade</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default"># Install a brewed python </div><div class="gmail_default">brew install python</div><div class="gmail_default"><br></div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#Install numpy, cython and h5py and scipy</div><div class="gmail_default">pip install numpy</div><div class="gmail_default">pip install scipy</div><div class="gmail_default">pip install cython</div><div class="gmail_default">brew install hdf5 </div><div class="gmail_default">pip install h5py </div><div class="gmail_default">pip install nipy</div><div class="gmail_default"><br></div><div class="gmail_default">#Install matplotlib with cairo support for png, ps, pdf and svg files</div><div class="gmail_default">brew install matplotlib --with-cairo</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#Relink numpy to brew as it was installed with pip</div><div class="gmail_default">brew link --overwrite numpy</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#Install Pandas</div><div class="gmail_default">pip install pandas</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#Install ipython with parallel and notebook support</div><div class="gmail_default">brew install zmq</div><div class="gmail_default">pip install ipython[all]</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#install IDE ninja</div><div class="gmail_default">pip install macfsevents</div><div class="gmail_default">brew install ninja-ide</div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">pip install -U scikit-learn </div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#<span class="">PYMVPA</span></div><div class="gmail_default">pip install nibabel</div><div class="gmail_default">brew install swig</div><div class="gmail_default"><br></div><div class="gmail_default">_________________________________________________________________</div><div class="gmail_default">#Download <span class="">PYMVPA</span> from github and extract</div><div class="gmail_default">git clone git://<a href="http://github.com/PyMVPA/PyMVPA.git" target="_blank">github.com/<span class="">PyMVPA</span>/<span class="">PyMVPA</span>.git</a></div><div class="gmail_default">unzip master</div><div class="gmail_default">cd <span class="">PyMVPA</span>-master</div><div class="gmail_default"><br></div><div class="gmail_default">#Build libsvm</div><div class="gmail_default">sudo make 3rd</div><div class="gmail_default"><br></div><div class="gmail_default">#Build <span class="">PyMVPA</span> itself</div><div class="gmail_default">sudo python setup.py build_ext</div><div class="gmail_default"><br></div><div class="gmail_default">#And install</div><div class="gmail_default">sudo python setup.py install</div><div class="gmail_default"><br></div><div class="gmail_default">If you get a locale error</div><div class="gmail_default">ValueError: unknown locale: UTF-8</div><div class="gmail_default">Either run these commands before running python or add them to your bash_profile or .profile</div><div class="gmail_default">export LC_ALL=en_US.UTF-8</div><div class="gmail_default">export LANG=en_US.UTF-8</div><div><br></div></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On 22 June 2016 at 22:18, Yun-Ta Tsai <span dir="ltr"><<a href="mailto:andytsai@mit.edu" target="_blank">andytsai@mit.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div style="direction:ltr;font-family:Tahoma;color:#000000;font-size:10pt">When i run the installation command:
<div>$ sudo port install py27-pymvpa +scipy +nibabel +hcluster + libsvm + matplotlib + pywavelet
<div><br>
</div>
<div>I get the following error:</div>
<div>
<div>---> Computing dependencies for py27-pymvpa</div>
<div>---> Building py27-pymvpa</div>
<div>Error: org.macports.build for port py27-pymvpa returned: command execution failed</div>
<div>Please see the log file for port py27-pymvpa for details:</div>
<div> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-pymvpa/py27-pymvpa/main.log</div>
<div>To report a bug, follow the instructions in the guide:</div>
<div> <a href="http://guide.macports.org/#project.tickets" target="_blank">http://guide.macports.org/#project.tickets</a></div>
<div>Error: Processing of port py27-pymvpa failed</div>
</div>
<div><br>
</div>
<div>I've attached the log file. Would appreciate any help. </div>
</div>
<div><br>
</div>
<div>Best,</div>
<div>Andy Tsai</div>
<div>Computational Biologist at UCSF School of Medicine </div>
</div>
</div>
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