<div dir="ltr">Sure (doingprettywellandhowareyou?). Below is the output (I had a feeling I pasted it in the first e-mail but apparently not)<br><b><br>python -c 'import mvpa2; print mvpa2.wtf()'<br><br></b>/usr/lib/python2.7/dist-packages/nose/util.py:14: DeprecationWarning: The compiler package is deprecated and removed in Python 3.x.<br> from compiler.consts import CO_GENERATOR<br>Current date: 2017-09-13 09:34<br>PyMVPA:<br> Version: 2.1.0<br> Hash: 828f4b4bea2488f8c7e3f6c2446a445d77325338<br> Path: /usr/lib/pymodules/python2.7/mvpa2/__init__.pyc<br> Version control (GIT):<br> GIT information could not be obtained due "/usr/lib/pymodules/python2.7/mvpa2/.. is not under GIT"<br>SYSTEM:<br> OS: posix Linux 3.2.0-4-amd64 #1 SMP Debian 3.2.89-2<br> Distribution: debian/7.11<br>EXTERNALS:<br> Present: atlas_fsl, cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, h5py, ipython, liblapack.so, libsvm, libsvm verbosity control, lxml, matplotlib, mdp, mdp ge 2.4, nibabel, nose, numpy, pylab, pylab plottable, pywt, pywt wp reconstruct, reportlab, scipy, skl, statsmodels, weave<br> Absent: atlas_pymvpa, cran-energy, elasticnet, glmnet, hcluster, lars, mass, nipy, nipy.neurospin, openopt, pprocess, pywt wp reconstruct fixed, rpy2, running ipython env, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.lightsvm, shogun.mpd, shogun.svmocas, shogun.svrlight<br> Versions of critical externals:<br> nibabel : 2.0.2<br> reportlab : 2.5<br> matplotlib : 1.1.1rc2<br> scipy : 0.10.1<br> ipython : 0.13.1<br> skl : 0.16.1<br> mdp : 3.4<br> numpy : 1.6.2<br> ctypes : 1.1.0<br> matplotlib : 1.1.1rc2<br> lxml : 2.3.2<br> nifti : failed to query due to "nifti is not a known dependency key."<br> numpy : 1.6.2<br> pywt : 0.2.0<br> Matplotlib backend: TkAgg<br>RUNTIME:<br> PyMVPA Environment Variables:<br> PYTHONPATH : ":/usr/lib/python2.7/lib-old:/usr/local/lib/python2.7/dist-packages:/data:/usr/lib/python2.7/lib-dynload:/usr/lib/python2.7/plat-linux2:/usr/lib/python2.7/dist-packages/gtk-2.0:/usr/lib/python2.7/dist-packages:/usr/lib/pymodules/python2.7:/usr/lib/python2.7/dist-packages/IPython/extensions:/usr/lib/python2.7:/usr/lib/python2.7/dist-packages/wx-2.8-gtk2-unicode:/usr/lib/python2.7/lib-tk:/usr/lib/python2.7/dist-packages/PIL"<br> PyMVPA Runtime Configuration:<br> [general]<br> verbose = 1<br> <br> [externals]<br> have running ipython env = no<br> have numpy = yes<br> have scipy = yes<br> have matplotlib = yes<br> have lxml = yes<br> have nibabel = yes<br> have atlas_fsl = yes<br> have atlas_pymvpa = no<br> have cpickle = yes<br> have cran-energy = no<br> have ctypes = yes<br> have elasticnet = no<br> have glmnet = no<br> have good scipy.stats.rdist = yes<br> have good scipy.stats.rv_discrete.ppf = yes<br> have griddata = yes<br> have gzip = yes<br> have h5py = yes<br> have hcluster = no<br> have ipython = yes<br> have lars = no<br> have liblapack.so = yes<br> have pylab = yes<br> have libsvm = yes<br> have libsvm verbosity control = yes<br> have mass = no<br> have mdp = yes<br> have mdp ge 2.4 = yes<br> have nipy = no<br> have nipy.neurospin = no<br> have nose = yes<br> have openopt = no<br> have pprocess = no<br> have pylab plottable = yes<br> have pywt = yes<br> have pywt wp reconstruct = yes<br> have pywt wp reconstruct fixed = no<br> have reportlab = yes<br> have rpy2 = no<br> have sg ge 0.6.4 = no<br> have sg ge 0.6.5 = no<br> have sg_fixedcachesize = no<br> have shogun = no<br> have shogun.krr = no<br> have shogun.lightsvm = no<br> have shogun.mpd = no<br> have shogun.svmocas = no<br> have shogun.svrlight = no<br> have skl = yes<br> have statsmodels = yes<br> have weave = yes<br> Process Information:<br> Name: python<br> State: R (running)<br> Tgid: 13804<br> Pid: 13804<br> PPid: 13722<br> TracerPid: 0<br> Uid: 1000 1000 1000 1000<br> Gid: 1000 1000 1000 1000<br> FDSize: 256<br> Groups: 24 25 29 30 44 46 104 109 112 1000 <br> VmPeak: 647452 kB<br> VmSize: 647452 kB<br> VmLck: 0 kB<br> VmPin: 0 kB<br> VmHWM: 107696 kB<br> VmRSS: 107696 kB<br> VmData: 125224 kB<br> VmStk: 132 kB<br> VmExe: 2396 kB<br> VmLib: 64348 kB<br> VmPTE: 1188 kB<br> VmSwap: 0 kB<br> Threads: 6<br> SigQ: 0/257267<br> SigPnd: 0000000000000000<br> ShdPnd: 0000000000000000<br> SigBlk: 0000000000000000<br> SigIgn: 0000000001001000<br> SigCgt: 0000000180000002<br> CapInh: 0000000000000000<br> CapPrm: 0000000000000000<br> CapEff: 0000000000000000<br> CapBnd: ffffffffffffffff<br> Cpus_allowed: f<br> Cpus_allowed_list: 0-3<br> Mems_allowed: 00000000,00000001<br> Mems_allowed_list: 0<br> voluntary_ctxt_switches: 426<br> nonvoluntary_ctxt_switches: 123<br><br><br><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Sep 13, 2017 at 9:21 AM, Yaroslav Halchenko <span dir="ltr"><<a href="mailto:debian@onerussian.com" target="_blank">debian@onerussian.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class=""><br>
On Wed, 13 Sep 2017, Anna Manelis wrote:<br>
<br>
> Dear PYMVPA developers,<br>
<br>
> I have installed mvpa2 on my Debian computer, but cannot import<br>
> mvpa2.suite for some reason.<br>
<br>
> >>> import mvpa2.suite as mvpa2<br>
<br>
> Traceback (most recent call last):<br>
</span>> Â File "<stdin>", line 1, in <module><br>
> Â File "/usr/lib/pymodules/python2.7/<wbr>mvpa2/suite.py", line 98, in<br>
> <module><br>
> Â Â Â from mvpa2.clfs.warehouse import *<br>
> Â File "/usr/lib/pymodules/python2.7/<wbr>mvpa2/clfs/warehouse.py", line 357,<br>
> in <module><br>
> Â Â Â sklPLSRegression = _skl_import('pls', 'PLSRegression')<br>
> Â File "/usr/lib/pymodules/python2.7/<wbr>mvpa2/clfs/warehouse.py", line 313,<br>
> in _skl_import<br>
> Â Â Â submod_ = __import__('sklearn.%s' % submod, fromlist=[submod])<br>
<span class="">> ImportError: No module named pls<br>
<br>
</span>incompatibility with sklearn -- some API changes I guess we didn't spot<br>
<br>
could you Anna (howdoyoudobtw????) provide output of<br>
<br>
python -c 'import mvpa2; print mvpa2.wtf()'<br>
<br>
?<br>
<span class="HOEnZb"><font color="#888888">--<br>
Yaroslav O. Halchenko<br>
Center for Open Neuroscience <a href="http://centerforopenneuroscience.org" rel="noreferrer" target="_blank">http://<wbr>centerforopenneuroscience.org</a><br>
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755<br>
Phone: <a href="tel:%2B1%20%28603%29%20646-9834" value="+16036469834">+1 (603) 646-9834</a> Fax: <a href="tel:%2B1%20%28603%29%20646-1419" value="+16036461419">+1 (603) 646-1419</a><br>
WWW: <a href="http://www.linkedin.com/in/yarik" rel="noreferrer" target="_blank">http://www.linkedin.com/in/<wbr>yarik</a><br>
<br>
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