[Pkg-exppsy-pynifti] PyNIfTI 0.20090303.1

Yaroslav Halchenko debian at onerussian.com
Sun Mar 29 16:21:41 UTC 2009

I wonder if you have nifti_tools handy?

or any other tool to dump the header of original/result nii.gz files?

if you have nifti_tool, you could simply inspect

nifti_tool -infiles bold.nii.gz tmp.nii.gz -diff_hdr

to see what header information got different for some reason?

also, may be I missed, what tool was used to render the image after all?
how does rendering of original bold.nii.gz look like?

On Sun, 29 Mar 2009, Matthias Ekman wrote:

> Hi,

> first of all: thanks for the fast reply.

> Yes, I also tried it with "pure PyNIfTI", with the same results on OS X and Win.
> So
>   nim=NiftiImage(os.path.join(pymvpa_dataroot, 'bold.nii.gz'))
>   nim.save('tmp.nii.gz

> leads to the same result as in the screenshot.

> I am running 0.20090303.1  on Debian and Win
> and 0.20081017.1 on OS X.

> mh? Is there any Information I could contribute to solve this issue?

> Cheers,
> Matthias

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Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-Newark
Student  Ph.D. @ CS Dept. NJIT
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