[Pkg-exppsy-pynifti] [SciPy-User] installing pynifti under EPD

Christopher Burns cburns at berkeley.edu
Fri Aug 28 02:05:35 UTC 2009


Hey Karl,

I'm Cc'ing the pynifti list in this response.  IIRC pynifti version
20090303 includes the necessary nifticlibs.  I believe all you need to
do is:
1) cd to the source directory
2) make # this will build the nifticlibs which are located in the
directory named '3rd'
3) python setup.py install

I just nuked my install and the above worked.  I'm using the git
repository, so it's possible my code is different.

Chris

On Thu, Aug 27, 2009 at 12:45 PM, Karl Young<karl.young at ucsf.edu> wrote:
>
> Sorry if this issue is slightly tangential to the interests of this
> group but I couldn't think of any place else to ask (e.g. I don't think
> the pynifti guys have a list). I'd like to read some analyze image files
> (Mayo clinic medical image file format) into numpy arrays and process
> them. This works fine in linux but I'm currently trying to use
> Enthought's EPD distribution under OS X (Python 2.5.4 |EPD_Py25 4.3.0|
> (r254:67916, May 17 2009, 20:07:12)) and having no luck installing
> pynifti to read the analyze files.
>
> I downloaded and tried to install pynifti (pynifti-0.20090303.1) using
> the standard distutils mechanism
>  but when I import nifti I got errors saying some of the symbols in
> _clib.so couldn't be found. So I downloaded and installed
> nifticlib-1.1.0 but that didn't help, I tried to copy the various
> nifticlib libraries into obvious places to no avail and there isn't much
> in the way of documentation on this so I was wondering if anyone had the
> magic incantation for installing pynifti under EPD on OS X; sorry again
> if this is slightly off topic.
>
> -- Karl Young
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