[DebianGIS-dev] r823 - in packages: . h5utils h5utils/branches h5utils/branches/upstream h5utils/branches/upstream/current h5utils/branches/upstream/current/colormaps
frankie at alioth.debian.org
frankie at alioth.debian.org
Mon May 14 18:39:31 UTC 2007
Author: frankie
Date: 2007-05-14 18:39:27 +0000 (Mon, 14 May 2007)
New Revision: 823
Added:
packages/h5utils/
packages/h5utils/branches/
packages/h5utils/branches/upstream/
packages/h5utils/branches/upstream/current/
packages/h5utils/branches/upstream/current/AUTHORS
packages/h5utils/branches/upstream/current/COPYING
packages/h5utils/branches/upstream/current/ChangeLog
packages/h5utils/branches/upstream/current/INSTALL
packages/h5utils/branches/upstream/current/Makefile.am
packages/h5utils/branches/upstream/current/Makefile.in
packages/h5utils/branches/upstream/current/NEWS
packages/h5utils/branches/upstream/current/README
packages/h5utils/branches/upstream/current/aclocal.m4
packages/h5utils/branches/upstream/current/arrayh4.c
packages/h5utils/branches/upstream/current/arrayh4.h
packages/h5utils/branches/upstream/current/arrayh5.c
packages/h5utils/branches/upstream/current/arrayh5.h
packages/h5utils/branches/upstream/current/colormaps/
packages/h5utils/branches/upstream/current/colormaps/autumn
packages/h5utils/branches/upstream/current/colormaps/bluered
packages/h5utils/branches/upstream/current/colormaps/bone
packages/h5utils/branches/upstream/current/colormaps/colorcube
packages/h5utils/branches/upstream/current/colormaps/cool
packages/h5utils/branches/upstream/current/colormaps/copper
packages/h5utils/branches/upstream/current/colormaps/dkbluered
packages/h5utils/branches/upstream/current/colormaps/flag
packages/h5utils/branches/upstream/current/colormaps/gray
packages/h5utils/branches/upstream/current/colormaps/green
packages/h5utils/branches/upstream/current/colormaps/hot
packages/h5utils/branches/upstream/current/colormaps/hsv
packages/h5utils/branches/upstream/current/colormaps/jet
packages/h5utils/branches/upstream/current/colormaps/lines
packages/h5utils/branches/upstream/current/colormaps/pink
packages/h5utils/branches/upstream/current/colormaps/prism
packages/h5utils/branches/upstream/current/colormaps/spring
packages/h5utils/branches/upstream/current/colormaps/summer
packages/h5utils/branches/upstream/current/colormaps/vga
packages/h5utils/branches/upstream/current/colormaps/winter
packages/h5utils/branches/upstream/current/colormaps/yarg
packages/h5utils/branches/upstream/current/colormaps/yellow
packages/h5utils/branches/upstream/current/compile
packages/h5utils/branches/upstream/current/config.h.in
packages/h5utils/branches/upstream/current/configure
packages/h5utils/branches/upstream/current/configure.ac
packages/h5utils/branches/upstream/current/copyright.h
packages/h5utils/branches/upstream/current/depcomp
packages/h5utils/branches/upstream/current/h4fromh5.c
packages/h5utils/branches/upstream/current/h5fromh4.1
packages/h5utils/branches/upstream/current/h5fromh4.c
packages/h5utils/branches/upstream/current/h5fromitxt.c
packages/h5utils/branches/upstream/current/h5fromtxt.1
packages/h5utils/branches/upstream/current/h5fromtxt.c
packages/h5utils/branches/upstream/current/h5math.1
packages/h5utils/branches/upstream/current/h5math.c
packages/h5utils/branches/upstream/current/h5read.cc
packages/h5utils/branches/upstream/current/h5topng.1.in
packages/h5utils/branches/upstream/current/h5topng.c
packages/h5utils/branches/upstream/current/h5totxt.1
packages/h5utils/branches/upstream/current/h5totxt.c
packages/h5utils/branches/upstream/current/h5tov5d.1
packages/h5utils/branches/upstream/current/h5tov5d.c
packages/h5utils/branches/upstream/current/h5tovtk.1
packages/h5utils/branches/upstream/current/h5tovtk.c
packages/h5utils/branches/upstream/current/h5utils.c
packages/h5utils/branches/upstream/current/h5utils.h
packages/h5utils/branches/upstream/current/install-sh
packages/h5utils/branches/upstream/current/missing
packages/h5utils/branches/upstream/current/writepng.c
packages/h5utils/branches/upstream/current/writepng.h
packages/h5utils/tags/
Log:
[svn-inject] Installing original source of h5utils
Added: packages/h5utils/branches/upstream/current/AUTHORS
===================================================================
--- packages/h5utils/branches/upstream/current/AUTHORS (rev 0)
+++ packages/h5utils/branches/upstream/current/AUTHORS 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1 @@
+h5utils was written by Steven G. Johnson (stevenj at alum.mit.edu).
Added: packages/h5utils/branches/upstream/current/COPYING
===================================================================
--- packages/h5utils/branches/upstream/current/COPYING (rev 0)
+++ packages/h5utils/branches/upstream/current/COPYING 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,375 @@
+#############################################################################
+
+ The h5utils package is
+ Copyright (c) 1999, 2000, 2001, 2002, 2003, 2004, 2005
+ by the Massachusetts Institute of Technology
+
+#############################################################################
+ The following license applies to all files in the
+ h5utils package, EXCEPT h5tov5d.c (see below).
+#############################################################################
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
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+The above copyright notice and this permission notice shall be
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+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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+IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
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+TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+#############################################################################
+ The following license applies ONLY to h5tov5d.c.
+#############################################################################
+
+ GNU GENERAL PUBLIC LICENSE
+ Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+ 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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+ <signature of Ty Coon>, 1 April 1989
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+This General Public License does not permit incorporating your program into
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Added: packages/h5utils/branches/upstream/current/ChangeLog
===================================================================
--- packages/h5utils/branches/upstream/current/ChangeLog (rev 0)
+++ packages/h5utils/branches/upstream/current/ChangeLog 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1 @@
+Generated by mkdist.sh
Added: packages/h5utils/branches/upstream/current/INSTALL
===================================================================
--- packages/h5utils/branches/upstream/current/INSTALL (rev 0)
+++ packages/h5utils/branches/upstream/current/INSTALL 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,236 @@
+Installation Instructions
+*************************
+
+Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002, 2004, 2005 Free
+Software Foundation, Inc.
+
+This file is free documentation; the Free Software Foundation gives
+unlimited permission to copy, distribute and modify it.
+
+Basic Installation
+==================
+
+These are generic installation instructions.
+
+ The `configure' shell script attempts to guess correct values for
+various system-dependent variables used during compilation. It uses
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+file `config.log' containing compiler output (useful mainly for
+debugging `configure').
+
+ It can also use an optional file (typically called `config.cache'
+and enabled with `--cache-file=config.cache' or simply `-C') that saves
+the results of its tests to speed up reconfiguring. (Caching is
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+
+ If you need to do unusual things to compile the package, please try
+to figure out how `configure' could check whether to do them, and mail
+diffs or instructions to the address given in the `README' so they can
+be considered for the next release. If you are using the cache, and at
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+
+ The file `configure.ac' (or `configure.in') is used to create
+`configure' by a program called `autoconf'. You only need
+`configure.ac' if you want to change it or regenerate `configure' using
+a newer version of `autoconf'.
+
+The simplest way to compile this package is:
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+ 1. `cd' to the directory containing the package's source code and type
+ `./configure' to configure the package for your system. If you're
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+ `sh ./configure' instead to prevent `csh' from trying to execute
+ `configure' itself.
+
+ Running `configure' takes awhile. While running, it prints some
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+
+ 2. Type `make' to compile the package.
+
+ 3. Optionally, type `make check' to run any self-tests that come with
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+ 4. Type `make install' to install the programs and any data files and
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+Compilers and Options
+=====================
+
+Some systems require unusual options for compilation or linking that the
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+ You can give `configure' initial values for configuration parameters
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+is an example:
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+ ./configure CC=c89 CFLAGS=-O2 LIBS=-lposix
+
+ *Note Defining Variables::, for more details.
+
+Compiling For Multiple Architectures
+====================================
+
+You can compile the package for more than one kind of computer at the
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+ If you have to use a `make' that does not support the `VPATH'
+variable, you have to compile the package for one architecture at a
+time in the source code directory. After you have installed the
+package for one architecture, use `make distclean' before reconfiguring
+for another architecture.
+
+Installation Names
+==================
+
+By default, `make install' will install the package's files in
+`/usr/local/bin', `/usr/local/man', etc. You can specify an
+installation prefix other than `/usr/local' by giving `configure' the
+option `--prefix=PREFIX'.
+
+ You can specify separate installation prefixes for
+architecture-specific files and architecture-independent files. If you
+give `configure' the option `--exec-prefix=PREFIX', the package will
+use PREFIX as the prefix for installing programs and libraries.
+Documentation and other data files will still use the regular prefix.
+
+ In addition, if you use an unusual directory layout you can give
+options like `--bindir=DIR' to specify different values for particular
+kinds of files. Run `configure --help' for a list of the directories
+you can set and what kinds of files go in them.
+
+ If the package supports it, you can cause programs to be installed
+with an extra prefix or suffix on their names by giving `configure' the
+option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'.
+
+Optional Features
+=================
+
+Some packages pay attention to `--enable-FEATURE' options to
+`configure', where FEATURE indicates an optional part of the package.
+They may also pay attention to `--with-PACKAGE' options, where PACKAGE
+is something like `gnu-as' or `x' (for the X Window System). The
+`README' should mention any `--enable-' and `--with-' options that the
+package recognizes.
+
+ For packages that use the X Window System, `configure' can usually
+find the X include and library files automatically, but if it doesn't,
+you can use the `configure' options `--x-includes=DIR' and
+`--x-libraries=DIR' to specify their locations.
+
+Specifying the System Type
+==========================
+
+There may be some features `configure' cannot figure out automatically,
+but needs to determine by the type of machine the package will run on.
+Usually, assuming the package is built to be run on the _same_
+architectures, `configure' can figure that out, but if it prints a
+message saying it cannot guess the machine type, give it the
+`--build=TYPE' option. TYPE can either be a short name for the system
+type, such as `sun4', or a canonical name which has the form:
+
+ CPU-COMPANY-SYSTEM
+
+where SYSTEM can have one of these forms:
+
+ OS KERNEL-OS
+
+ See the file `config.sub' for the possible values of each field. If
+`config.sub' isn't included in this package, then this package doesn't
+need to know the machine type.
+
+ If you are _building_ compiler tools for cross-compiling, you should
+use the `--target=TYPE' option to select the type of system they will
+produce code for.
+
+ If you want to _use_ a cross compiler, that generates code for a
+platform different from the build platform, you should specify the
+"host" platform (i.e., that on which the generated programs will
+eventually be run) with `--host=TYPE'.
+
+Sharing Defaults
+================
+
+If you want to set default values for `configure' scripts to share, you
+can create a site shell script called `config.site' that gives default
+values for variables like `CC', `cache_file', and `prefix'.
+`configure' looks for `PREFIX/share/config.site' if it exists, then
+`PREFIX/etc/config.site' if it exists. Or, you can set the
+`CONFIG_SITE' environment variable to the location of the site script.
+A warning: not all `configure' scripts look for a site script.
+
+Defining Variables
+==================
+
+Variables not defined in a site shell script can be set in the
+environment passed to `configure'. However, some packages may run
+configure again during the build, and the customized values of these
+variables may be lost. In order to avoid this problem, you should set
+them in the `configure' command line, using `VAR=value'. For example:
+
+ ./configure CC=/usr/local2/bin/gcc
+
+causes the specified `gcc' to be used as the C compiler (unless it is
+overridden in the site shell script). Here is a another example:
+
+ /bin/bash ./configure CONFIG_SHELL=/bin/bash
+
+Here the `CONFIG_SHELL=/bin/bash' operand causes subsequent
+configuration-related scripts to be executed by `/bin/bash'.
+
+`configure' Invocation
+======================
+
+`configure' recognizes the following options to control how it operates.
+
+`--help'
+`-h'
+ Print a summary of the options to `configure', and exit.
+
+`--version'
+`-V'
+ Print the version of Autoconf used to generate the `configure'
+ script, and exit.
+
+`--cache-file=FILE'
+ Enable the cache: use and save the results of the tests in FILE,
+ traditionally `config.cache'. FILE defaults to `/dev/null' to
+ disable caching.
+
+`--config-cache'
+`-C'
+ Alias for `--cache-file=config.cache'.
+
+`--quiet'
+`--silent'
+`-q'
+ Do not print messages saying which checks are being made. To
+ suppress all normal output, redirect it to `/dev/null' (any error
+ messages will still be shown).
+
+`--srcdir=DIR'
+ Look for the package's source code in directory DIR. Usually
+ `configure' can determine that directory automatically.
+
+`configure' also accepts some other, not widely useful, options. Run
+`configure --help' for more details.
+
Added: packages/h5utils/branches/upstream/current/Makefile.am
===================================================================
--- packages/h5utils/branches/upstream/current/Makefile.am (rev 0)
+++ packages/h5utils/branches/upstream/current/Makefile.am 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,50 @@
+COLORMAPS = colormaps/autumn colormaps/bluered colormaps/bone \
+colormaps/colorcube colormaps/cool colormaps/copper colormaps/flag \
+colormaps/gray colormaps/green colormaps/hot colormaps/hsv \
+colormaps/jet colormaps/lines colormaps/pink colormaps/prism \
+colormaps/spring colormaps/summer colormaps/vga colormaps/winter \
+colormaps/yarg colormaps/yellow colormaps/dkbluered
+
+EXTRA_MANS = h5topng.1.in h5tov5d.1 h5fromh4.1 h5math.1
+EXTRA_DIST = h5read.cc copyright.h $(COLORMAPS) $(EXTRA_MANS)
+
+noinst_PROGRAMS = h5fromitxt # quick hack, not really supported
+bin_PROGRAMS = h5totxt h5fromtxt h5tovtk @MORE_H5UTILS@
+EXTRA_PROGRAMS = h5topng h5tov5d h5fromh4 h4fromh5 h5math
+
+dist_man_MANS = h5totxt.1 h5fromtxt.1 h5tovtk.1 @MORE_H5UTILS_MANS@
+nodist_man_MANS = @H5TOPNG_MAN@
+
+COMMON_SRC = arrayh5.c arrayh5.h h5utils.c h5utils.h
+
+h5totxt_SOURCES = h5totxt.c $(COMMON_SRC)
+h5fromtxt_SOURCES = h5fromtxt.c $(COMMON_SRC)
+h5fromitxt_SOURCES = h5fromitxt.c $(COMMON_SRC)
+h5tovtk_SOURCES = h5tovtk.c $(COMMON_SRC)
+
+h5topng_SOURCES = h5topng.c writepng.c writepng.h $(COMMON_SRC)
+h5topng_LDADD = @PNG_LIBS@
+
+h5tov5d_SOURCES = h5tov5d.c $(COMMON_SRC)
+h5tov5d_CPPFLAGS = $(AM_CPPFLAGS) @V5D_INCLUDES@
+h5tov5d_LDADD = @V5D_FILES@
+
+h5fromh4_SOURCES = h5fromh4.c arrayh4.c arrayh4.h $(COMMON_SRC)
+h5fromh4_LDADD = @H4_LIBS@
+
+h4fromh5_SOURCES = h4fromh5.c arrayh4.c arrayh4.h $(COMMON_SRC)
+h4fromh5_LDADD = @H4_LIBS@
+
+h5math_SOURCES = h5math.c $(COMMON_SRC)
+h5math_LDADD = -lmatheval
+
+octdir = @OCT_INSTALL_DIR@
+oct_DATA = @H5READ@
+
+h5read.oct: h5read.cc arrayh5.h arrayh5.o
+ mkoctfile $(DEFS) $(CPPFLAGS) $(srcdir)/h5read.cc arrayh5.o $(LDFLAGS) $(LIBS)
+
+clean-hook:
+ rm -f h5read.oct
+
+nobase_dist_pkgdata_DATA = $(COLORMAPS)
Added: packages/h5utils/branches/upstream/current/Makefile.in
===================================================================
--- packages/h5utils/branches/upstream/current/Makefile.in (rev 0)
+++ packages/h5utils/branches/upstream/current/Makefile.in 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,813 @@
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+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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+
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+
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Added: packages/h5utils/branches/upstream/current/NEWS
===================================================================
--- packages/h5utils/branches/upstream/current/NEWS (rev 0)
+++ packages/h5utils/branches/upstream/current/NEWS 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,163 @@
+h5utils 1.10 (9/2/05)
+
+ * Added h4fromh5 utility. (NCSA seems to be no longer shipping
+ the HDF5/HDF4 conversion tools with the latest HDF5 release.)
+
+ * Added dkbluered color map, which is similar to bluered but
+ uses a somewhat wider range of colors.
+
+h5utils 1.9.1 (8/5/04)
+
+ * Fix h5topng compilation failure with some non-C99 compilers;
+ thanks to Maarten van Reeuwijk for the bug report.
+
+h5utils 1.9 (7/12/04)
+
+ * Added new h5math utility, which creates and combines HDF5 datasets
+ using a user-specified mathematical expression. (Requires GNU
+ libmatheval to be installed.)
+
+ * h5topng: Matlab-like start:end or start:step:end notation for
+ slice indices, to allow a whole sequence of slices to be output as
+ a sequence of PNG images.
+
+ * h5topng: if contour/overlay dataset does not have same dimensions
+ as output data, it is periodically "tiled" over the output.
+
+h5utils 1.8 (5/22/04)
+
+ * New -A and -a options for h5topng to allow translucent overlays
+ from one file onto another (an alternative or complement to the
+ -C contour-overlay option).
+
+ * h5topng uses 24-bit direct color by default (use -8 option for
+ old 8-bit behavior).
+
+ * h5topng uses columns/rows for x/y by default (use -T to swap),
+ the opposite of the old behavior.
+
+ * There is no default -z 0 slice dimension in h5topng/h5totxt any more.
+ You must specify a slice for 3+ dimensional data in h5topng.
+ h5totxt dumps the whole data file by default unless one or more
+ slices are specified.
+
+ * Support specifying multiple slice dimensions for 4+ dimensional
+ datasets, with new "-t" option to indicate final dimension.
+
+ * Slices are also supported now in h5tovtk and h5tov5d.
+
+ * New -. option in h5totxt to specify number of significant digits;
+ output 16 digits by default instead of 6, previously.
+
+h5utils 1.7.1 (3/16/02)
+
+ * Fixed array overrun in h5topng that caused a floating-point exception
+ on Alphas; thanks to Marin Soljacic for the bug report.
+
+h5utils 1.7 (3/9/02)
+
+ * h5topng now supports multiple, user-definable color tables, a number
+ of which are provided. INCOMPATIBLE CHANGE: the -c option now has
+ the syntax: -c <colortable>. The old behavior corresponds to the
+ included "bluered" colortable, invoked via: -c bluered.
+
+ * New -R option for h5topng to use a consistent color scale for
+ all specified files.
+
+ * New -0 option for h5topng and h5totxt that shifts the origin of the
+ slice coordinates to the dataset center.
+
+ * Added h5tovtk program to output VTK (Visualization ToolKit) data files.
+
+ * Support -T (transpose dimensions) option in h5tov5d.
+
+ * Fixed bug in h5topng that caused extra rows/columns of garbage pixels
+ to be written at the edges of images when scaling was used.
+
+ * When compiling the h5read Octave plugin, respect the CPPFLAGS and LDFLAGS
+ environment variables. Thanks to Max Colice for the bug report.
+
+ * Fixed problem when --without-h5tov5d and --without-h5fromh4 are used.
+ Thanks to Nikola Ivanov Nikolov for the fix.
+
+h5utils 1.6 (1/17/01)
+
+ * Don't build h5fromh4 if the superior h4toh5 tool (from HDF5 1.4)
+ is present. Also added --{with,without}-h5fromh4 option to
+ configure to force whether h5fromh4 is built.
+
+h5utils 1.5.1 (12/9/00)
+
+ * Support manually disabling Octave plugin support
+ (configure --without-octave) in case of C++ problems.
+
+ * Support Vis5d+ and Debian HDF header file locations.
+
+h5utils 1.5 (7/9/00)
+
+ * Added h5fromh4 program to convert HDF4 datasets to HDF5 format.
+
+ * Added -S <s> option to h5topng as a shortcut for -X <s> -Y <s>.
+
+h5utils 1.4 (5/28/00)
+
+ * Added h5fromtxt program to convert text input to an HDF5 dataset.
+
+h5utils 1.3.4 (1/31/00)
+
+ * Improved -C contour plotting in h5topng.
+
+ * Fix in h5topng man page (thanks to Christoph Becher).
+
+h5utils 1.3.3 (1/30/00)
+
+ * Bug fix in h5topng (would sometimes output solid black images).
+ Thanks to Karl Koch for the bug report.
+
+h5utils 1.3.2 (1/28/00)
+
+ * Added h5topng -Z option to center color scale on zero.
+
+ * Now support h5topng -C filename:dataset.
+
+h5utils 1.3.1 (1/27/00)
+
+ * Bug fixes in dataset name-handling, especially when using h5tov5d to
+ join multiple datasets into one output file.
+
+h5utils 1.3 (1/21/00)
+
+ * You can now specify individual datasets within a file by using
+ <filename>:<dataset> instead of just <filename> with h5topng,
+ h5totxt, and h5tov5d.
+
+h5utils 1.2.3: (1/20/00)
+
+ * Fixed minor bug in 'h5totxt -h'.
+
+h5utils 1.2.2: (1/12/00)
+
+ * Makefile now includes CPPFLAGS in the compiler flags, making it
+ easier to use header files in non-standard locations. (CPPFLAGS
+ is the proper place to put -I flags for the configure script.)
+
+h5utils 1.2.1: (1/1/00)
+
+ * Modified -o option of h5tov5d to join datasets into a single Vis5d file.
+
+h5utils 1.2: (12/31/99)
+
+ * Added h5tov5d program for converting to Vis5d format.
+
+ * Improved installation; h5read.oct now goes into the sitewide Octave
+ plugins directory, and things work correctly when only some of the
+ utilities are compiled.
+
+h5utils 1.1: (12/6/99)
+
+ * Added h5totxt program for exporting 2d slices of HDF5 files to text
+ suitable for importing into a spreadsheet.
+
+h5utils 1.0: (11/22/99)
+
+ * Initial release.
Added: packages/h5utils/branches/upstream/current/README
===================================================================
--- packages/h5utils/branches/upstream/current/README (rev 0)
+++ packages/h5utils/branches/upstream/current/README 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,34 @@
+ h5utils
+ http://ab-initio.mit.edu/h5utils/
+
+h5utils is a set of utilities for visualization and conversion of
+scientific data in the free, portable HDF5 format. HDF5 was developed
+in the National Center for Supercomputing Applications at the
+University of Illinois.
+
+Besides providing a simple tool for batch visualization as PNG images,
+h5utils also includes programs to convert HDF5 datasets into the
+formats required by other free visualization software (e.g. plain
+text, Vis5d, and VTK).
+
+The included utilities are:
+
+ * h5fromtxt and h5totxt: convert ASCII data (e.g. comma or tab
+ delimited) to/from HDF5.
+ * h5topng: convert 2d slices of HDF5 datasets to PNG images, with
+ a variety of color tables and other options.
+ * h5tov5d: convert HDF5 datasets to the format used by the free
+ 3d+ visualization tool Vis5d.
+ * h5tovtk: convert HDF5 datasets to VTK format for use by the free
+ Visualization ToolKit (along with supporting programs like MayaVi).
+ * h5read.oct: a plug-in for GNU Octave (a Matlab-like program) to
+ read 2d slices of HDF5 datasets (the latest versions of Octave
+ include native support for HDF5).
+ * h5fromh4: convert HDF (version 4) datasets to HDF5; mostly
+ superceded by the h4toh5 program included with recent versins of HDF5.
+
+This package is developed by Steven G. Johnson (stevenj at alum.mit.edu),
+and is free software that should easily install under any Unix-like
+operating system (e.g. GNU/Linux).
+
+See the COPYING file for license and copyright information.
Added: packages/h5utils/branches/upstream/current/aclocal.m4
===================================================================
--- packages/h5utils/branches/upstream/current/aclocal.m4 (rev 0)
+++ packages/h5utils/branches/upstream/current/aclocal.m4 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,891 @@
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+ esac
+ # We check with `-c' and `-o' for the sake of the "dashmstdout"
+ # mode. It turns out that the SunPro C++ compiler does not properly
+ # handle `-M -o', and we need to detect this.
+ if depmode=$depmode \
+ source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
+ depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+ $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
+ >/dev/null 2>conftest.err &&
+ grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
+ ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
+ # icc doesn't choke on unknown options, it will just issue warnings
+ # or remarks (even with -Werror). So we grep stderr for any message
+ # that says an option was ignored or not supported.
+ # When given -MP, icc 7.0 and 7.1 complain thusly:
+ # icc: Command line warning: ignoring option '-M'; no argument required
+ # The diagnosis changed in icc 8.0:
+ # icc: Command line remark: option '-MP' not supported
+ if (grep 'ignoring option' conftest.err ||
+ grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
+ am_cv_$1_dependencies_compiler_type=$depmode
+ break
+ fi
+ fi
+ done
+
+ cd ..
+ rm -rf conftest.dir
+else
+ am_cv_$1_dependencies_compiler_type=none
+fi
+])
+AC_SUBST([$1DEPMODE], [depmode=$am_cv_$1_dependencies_compiler_type])
+AM_CONDITIONAL([am__fastdep$1], [
+ test "x$enable_dependency_tracking" != xno \
+ && test "$am_cv_$1_dependencies_compiler_type" = gcc3])
+])
+
+
+# AM_SET_DEPDIR
+# -------------
+# Choose a directory name for dependency files.
+# This macro is AC_REQUIREd in _AM_DEPENDENCIES
+AC_DEFUN([AM_SET_DEPDIR],
+[AC_REQUIRE([AM_SET_LEADING_DOT])dnl
+AC_SUBST([DEPDIR], ["${am__leading_dot}deps"])dnl
+])
+
+
+# AM_DEP_TRACK
+# ------------
+AC_DEFUN([AM_DEP_TRACK],
+[AC_ARG_ENABLE(dependency-tracking,
+[ --disable-dependency-tracking speeds up one-time build
+ --enable-dependency-tracking do not reject slow dependency extractors])
+if test "x$enable_dependency_tracking" != xno; then
+ am_depcomp="$ac_aux_dir/depcomp"
+ AMDEPBACKSLASH='\'
+fi
+AM_CONDITIONAL([AMDEP], [test "x$enable_dependency_tracking" != xno])
+AC_SUBST([AMDEPBACKSLASH])
+])
+
+# Generate code to set up dependency tracking. -*- Autoconf -*-
+
+# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+#serial 3
+
+# _AM_OUTPUT_DEPENDENCY_COMMANDS
+# ------------------------------
+AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS],
+[for mf in $CONFIG_FILES; do
+ # Strip MF so we end up with the name of the file.
+ mf=`echo "$mf" | sed -e 's/:.*$//'`
+ # Check whether this is an Automake generated Makefile or not.
+ # We used to match only the files named `Makefile.in', but
+ # some people rename them; so instead we look at the file content.
+ # Grep'ing the first line is not enough: some people post-process
+ # each Makefile.in and add a new line on top of each file to say so.
+ # So let's grep whole file.
+ if grep '^#.*generated by automake' $mf > /dev/null 2>&1; then
+ dirpart=`AS_DIRNAME("$mf")`
+ else
+ continue
+ fi
+ # Extract the definition of DEPDIR, am__include, and am__quote
+ # from the Makefile without running `make'.
+ DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
+ test -z "$DEPDIR" && continue
+ am__include=`sed -n 's/^am__include = //p' < "$mf"`
+ test -z "am__include" && continue
+ am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
+ # When using ansi2knr, U may be empty or an underscore; expand it
+ U=`sed -n 's/^U = //p' < "$mf"`
+ # Find all dependency output files, they are included files with
+ # $(DEPDIR) in their names. We invoke sed twice because it is the
+ # simplest approach to changing $(DEPDIR) to its actual value in the
+ # expansion.
+ for file in `sed -n "
+ s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
+ sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
+ # Make sure the directory exists.
+ test -f "$dirpart/$file" && continue
+ fdir=`AS_DIRNAME(["$file"])`
+ AS_MKDIR_P([$dirpart/$fdir])
+ # echo "creating $dirpart/$file"
+ echo '# dummy' > "$dirpart/$file"
+ done
+done
+])# _AM_OUTPUT_DEPENDENCY_COMMANDS
+
+
+# AM_OUTPUT_DEPENDENCY_COMMANDS
+# -----------------------------
+# This macro should only be invoked once -- use via AC_REQUIRE.
+#
+# This code is only required when automatic dependency tracking
+# is enabled. FIXME. This creates each `.P' file that we will
+# need in order to bootstrap the dependency handling code.
+AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
+[AC_CONFIG_COMMANDS([depfiles],
+ [test x"$AMDEP_TRUE" != x"" || _AM_OUTPUT_DEPENDENCY_COMMANDS],
+ [AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"])
+])
+
+# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 8
+
+# AM_CONFIG_HEADER is obsolete. It has been replaced by AC_CONFIG_HEADERS.
+AU_DEFUN([AM_CONFIG_HEADER], [AC_CONFIG_HEADERS($@)])
+
+# Do all the work for Automake. -*- Autoconf -*-
+
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 12
+
+# This macro actually does too much. Some checks are only needed if
+# your package does certain things. But this isn't really a big deal.
+
+# AM_INIT_AUTOMAKE(PACKAGE, VERSION, [NO-DEFINE])
+# AM_INIT_AUTOMAKE([OPTIONS])
+# -----------------------------------------------
+# The call with PACKAGE and VERSION arguments is the old style
+# call (pre autoconf-2.50), which is being phased out. PACKAGE
+# and VERSION should now be passed to AC_INIT and removed from
+# the call to AM_INIT_AUTOMAKE.
+# We support both call styles for the transition. After
+# the next Automake release, Autoconf can make the AC_INIT
+# arguments mandatory, and then we can depend on a new Autoconf
+# release and drop the old call support.
+AC_DEFUN([AM_INIT_AUTOMAKE],
+[AC_PREREQ([2.58])dnl
+dnl Autoconf wants to disallow AM_ names. We explicitly allow
+dnl the ones we care about.
+m4_pattern_allow([^AM_[A-Z]+FLAGS$])dnl
+AC_REQUIRE([AM_SET_CURRENT_AUTOMAKE_VERSION])dnl
+AC_REQUIRE([AC_PROG_INSTALL])dnl
+# test to see if srcdir already configured
+if test "`cd $srcdir && pwd`" != "`pwd`" &&
+ test -f $srcdir/config.status; then
+ AC_MSG_ERROR([source directory already configured; run "make distclean" there first])
+fi
+
+# test whether we have cygpath
+if test -z "$CYGPATH_W"; then
+ if (cygpath --version) >/dev/null 2>/dev/null; then
+ CYGPATH_W='cygpath -w'
+ else
+ CYGPATH_W=echo
+ fi
+fi
+AC_SUBST([CYGPATH_W])
+
+# Define the identity of the package.
+dnl Distinguish between old-style and new-style calls.
+m4_ifval([$2],
+[m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl
+ AC_SUBST([PACKAGE], [$1])dnl
+ AC_SUBST([VERSION], [$2])],
+[_AM_SET_OPTIONS([$1])dnl
+ AC_SUBST([PACKAGE], ['AC_PACKAGE_TARNAME'])dnl
+ AC_SUBST([VERSION], ['AC_PACKAGE_VERSION'])])dnl
+
+_AM_IF_OPTION([no-define],,
+[AC_DEFINE_UNQUOTED(PACKAGE, "$PACKAGE", [Name of package])
+ AC_DEFINE_UNQUOTED(VERSION, "$VERSION", [Version number of package])])dnl
+
+# Some tools Automake needs.
+AC_REQUIRE([AM_SANITY_CHECK])dnl
+AC_REQUIRE([AC_ARG_PROGRAM])dnl
+AM_MISSING_PROG(ACLOCAL, aclocal-${am__api_version})
+AM_MISSING_PROG(AUTOCONF, autoconf)
+AM_MISSING_PROG(AUTOMAKE, automake-${am__api_version})
+AM_MISSING_PROG(AUTOHEADER, autoheader)
+AM_MISSING_PROG(MAKEINFO, makeinfo)
+AM_PROG_INSTALL_SH
+AM_PROG_INSTALL_STRIP
+AC_REQUIRE([AM_PROG_MKDIR_P])dnl
+# We need awk for the "check" target. The system "awk" is bad on
+# some platforms.
+AC_REQUIRE([AC_PROG_AWK])dnl
+AC_REQUIRE([AC_PROG_MAKE_SET])dnl
+AC_REQUIRE([AM_SET_LEADING_DOT])dnl
+_AM_IF_OPTION([tar-ustar], [_AM_PROG_TAR([ustar])],
+ [_AM_IF_OPTION([tar-pax], [_AM_PROG_TAR([pax])],
+ [_AM_PROG_TAR([v7])])])
+_AM_IF_OPTION([no-dependencies],,
+[AC_PROVIDE_IFELSE([AC_PROG_CC],
+ [_AM_DEPENDENCIES(CC)],
+ [define([AC_PROG_CC],
+ defn([AC_PROG_CC])[_AM_DEPENDENCIES(CC)])])dnl
+AC_PROVIDE_IFELSE([AC_PROG_CXX],
+ [_AM_DEPENDENCIES(CXX)],
+ [define([AC_PROG_CXX],
+ defn([AC_PROG_CXX])[_AM_DEPENDENCIES(CXX)])])dnl
+])
+])
+
+
+# When config.status generates a header, we must update the stamp-h file.
+# This file resides in the same directory as the config header
+# that is generated. The stamp files are numbered to have different names.
+
+# Autoconf calls _AC_AM_CONFIG_HEADER_HOOK (when defined) in the
+# loop where config.status creates the headers, so we can generate
+# our stamp files there.
+AC_DEFUN([_AC_AM_CONFIG_HEADER_HOOK],
+[# Compute $1's index in $config_headers.
+_am_stamp_count=1
+for _am_header in $config_headers :; do
+ case $_am_header in
+ $1 | $1:* )
+ break ;;
+ * )
+ _am_stamp_count=`expr $_am_stamp_count + 1` ;;
+ esac
+done
+echo "timestamp for $1" >`AS_DIRNAME([$1])`/stamp-h[]$_am_stamp_count])
+
+# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_PROG_INSTALL_SH
+# ------------------
+# Define $install_sh.
+AC_DEFUN([AM_PROG_INSTALL_SH],
+[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
+install_sh=${install_sh-"$am_aux_dir/install-sh"}
+AC_SUBST(install_sh)])
+
+# Copyright (C) 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 2
+
+# Check whether the underlying file-system supports filenames
+# with a leading dot. For instance MS-DOS doesn't.
+AC_DEFUN([AM_SET_LEADING_DOT],
+[rm -rf .tst 2>/dev/null
+mkdir .tst 2>/dev/null
+if test -d .tst; then
+ am__leading_dot=.
+else
+ am__leading_dot=_
+fi
+rmdir .tst 2>/dev/null
+AC_SUBST([am__leading_dot])])
+
+# Add --enable-maintainer-mode option to configure. -*- Autoconf -*-
+# From Jim Meyering
+
+# Copyright (C) 1996, 1998, 2000, 2001, 2002, 2003, 2004, 2005
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 4
+
+AC_DEFUN([AM_MAINTAINER_MODE],
+[AC_MSG_CHECKING([whether to enable maintainer-specific portions of Makefiles])
+ dnl maintainer-mode is disabled by default
+ AC_ARG_ENABLE(maintainer-mode,
+[ --enable-maintainer-mode enable make rules and dependencies not useful
+ (and sometimes confusing) to the casual installer],
+ USE_MAINTAINER_MODE=$enableval,
+ USE_MAINTAINER_MODE=no)
+ AC_MSG_RESULT([$USE_MAINTAINER_MODE])
+ AM_CONDITIONAL(MAINTAINER_MODE, [test $USE_MAINTAINER_MODE = yes])
+ MAINT=$MAINTAINER_MODE_TRUE
+ AC_SUBST(MAINT)dnl
+]
+)
+
+AU_DEFUN([jm_MAINTAINER_MODE], [AM_MAINTAINER_MODE])
+
+# Check to see how 'make' treats includes. -*- Autoconf -*-
+
+# Copyright (C) 2001, 2002, 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 3
+
+# AM_MAKE_INCLUDE()
+# -----------------
+# Check to see how make treats includes.
+AC_DEFUN([AM_MAKE_INCLUDE],
+[am_make=${MAKE-make}
+cat > confinc << 'END'
+am__doit:
+ @echo done
+.PHONY: am__doit
+END
+# If we don't find an include directive, just comment out the code.
+AC_MSG_CHECKING([for style of include used by $am_make])
+am__include="#"
+am__quote=
+_am_result=none
+# First try GNU make style include.
+echo "include confinc" > confmf
+# We grep out `Entering directory' and `Leaving directory'
+# messages which can occur if `w' ends up in MAKEFLAGS.
+# In particular we don't look at `^make:' because GNU make might
+# be invoked under some other name (usually "gmake"), in which
+# case it prints its new name instead of `make'.
+if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then
+ am__include=include
+ am__quote=
+ _am_result=GNU
+fi
+# Now try BSD make style include.
+if test "$am__include" = "#"; then
+ echo '.include "confinc"' > confmf
+ if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then
+ am__include=.include
+ am__quote="\""
+ _am_result=BSD
+ fi
+fi
+AC_SUBST([am__include])
+AC_SUBST([am__quote])
+AC_MSG_RESULT([$_am_result])
+rm -f confinc confmf
+])
+
+# Fake the existence of programs that GNU maintainers use. -*- Autoconf -*-
+
+# Copyright (C) 1997, 1999, 2000, 2001, 2003, 2005
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 4
+
+# AM_MISSING_PROG(NAME, PROGRAM)
+# ------------------------------
+AC_DEFUN([AM_MISSING_PROG],
+[AC_REQUIRE([AM_MISSING_HAS_RUN])
+$1=${$1-"${am_missing_run}$2"}
+AC_SUBST($1)])
+
+
+# AM_MISSING_HAS_RUN
+# ------------------
+# Define MISSING if not defined so far and test if it supports --run.
+# If it does, set am_missing_run to use it, otherwise, to nothing.
+AC_DEFUN([AM_MISSING_HAS_RUN],
+[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
+test x"${MISSING+set}" = xset || MISSING="\${SHELL} $am_aux_dir/missing"
+# Use eval to expand $SHELL
+if eval "$MISSING --run true"; then
+ am_missing_run="$MISSING --run "
+else
+ am_missing_run=
+ AC_MSG_WARN([`missing' script is too old or missing])
+fi
+])
+
+# Copyright (C) 2003, 2004, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_PROG_MKDIR_P
+# ---------------
+# Check whether `mkdir -p' is supported, fallback to mkinstalldirs otherwise.
+#
+# Automake 1.8 used `mkdir -m 0755 -p --' to ensure that directories
+# created by `make install' are always world readable, even if the
+# installer happens to have an overly restrictive umask (e.g. 077).
+# This was a mistake. There are at least two reasons why we must not
+# use `-m 0755':
+# - it causes special bits like SGID to be ignored,
+# - it may be too restrictive (some setups expect 775 directories).
+#
+# Do not use -m 0755 and let people choose whatever they expect by
+# setting umask.
+#
+# We cannot accept any implementation of `mkdir' that recognizes `-p'.
+# Some implementations (such as Solaris 8's) are not thread-safe: if a
+# parallel make tries to run `mkdir -p a/b' and `mkdir -p a/c'
+# concurrently, both version can detect that a/ is missing, but only
+# one can create it and the other will error out. Consequently we
+# restrict ourselves to GNU make (using the --version option ensures
+# this.)
+AC_DEFUN([AM_PROG_MKDIR_P],
+[if mkdir -p --version . >/dev/null 2>&1 && test ! -d ./--version; then
+ # We used to keeping the `.' as first argument, in order to
+ # allow $(mkdir_p) to be used without argument. As in
+ # $(mkdir_p) $(somedir)
+ # where $(somedir) is conditionally defined. However this is wrong
+ # for two reasons:
+ # 1. if the package is installed by a user who cannot write `.'
+ # make install will fail,
+ # 2. the above comment should most certainly read
+ # $(mkdir_p) $(DESTDIR)$(somedir)
+ # so it does not work when $(somedir) is undefined and
+ # $(DESTDIR) is not.
+ # To support the latter case, we have to write
+ # test -z "$(somedir)" || $(mkdir_p) $(DESTDIR)$(somedir),
+ # so the `.' trick is pointless.
+ mkdir_p='mkdir -p --'
+else
+ # On NextStep and OpenStep, the `mkdir' command does not
+ # recognize any option. It will interpret all options as
+ # directories to create, and then abort because `.' already
+ # exists.
+ for d in ./-p ./--version;
+ do
+ test -d $d && rmdir $d
+ done
+ # $(mkinstalldirs) is defined by Automake if mkinstalldirs exists.
+ if test -f "$ac_aux_dir/mkinstalldirs"; then
+ mkdir_p='$(mkinstalldirs)'
+ else
+ mkdir_p='$(install_sh) -d'
+ fi
+fi
+AC_SUBST([mkdir_p])])
+
+# Helper functions for option handling. -*- Autoconf -*-
+
+# Copyright (C) 2001, 2002, 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 3
+
+# _AM_MANGLE_OPTION(NAME)
+# -----------------------
+AC_DEFUN([_AM_MANGLE_OPTION],
+[[_AM_OPTION_]m4_bpatsubst($1, [[^a-zA-Z0-9_]], [_])])
+
+# _AM_SET_OPTION(NAME)
+# ------------------------------
+# Set option NAME. Presently that only means defining a flag for this option.
+AC_DEFUN([_AM_SET_OPTION],
+[m4_define(_AM_MANGLE_OPTION([$1]), 1)])
+
+# _AM_SET_OPTIONS(OPTIONS)
+# ----------------------------------
+# OPTIONS is a space-separated list of Automake options.
+AC_DEFUN([_AM_SET_OPTIONS],
+[AC_FOREACH([_AM_Option], [$1], [_AM_SET_OPTION(_AM_Option)])])
+
+# _AM_IF_OPTION(OPTION, IF-SET, [IF-NOT-SET])
+# -------------------------------------------
+# Execute IF-SET if OPTION is set, IF-NOT-SET otherwise.
+AC_DEFUN([_AM_IF_OPTION],
+[m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])])
+
+# Check to make sure that the build environment is sane. -*- Autoconf -*-
+
+# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 4
+
+# AM_SANITY_CHECK
+# ---------------
+AC_DEFUN([AM_SANITY_CHECK],
+[AC_MSG_CHECKING([whether build environment is sane])
+# Just in case
+sleep 1
+echo timestamp > conftest.file
+# Do `set' in a subshell so we don't clobber the current shell's
+# arguments. Must try -L first in case configure is actually a
+# symlink; some systems play weird games with the mod time of symlinks
+# (eg FreeBSD returns the mod time of the symlink's containing
+# directory).
+if (
+ set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null`
+ if test "$[*]" = "X"; then
+ # -L didn't work.
+ set X `ls -t $srcdir/configure conftest.file`
+ fi
+ rm -f conftest.file
+ if test "$[*]" != "X $srcdir/configure conftest.file" \
+ && test "$[*]" != "X conftest.file $srcdir/configure"; then
+
+ # If neither matched, then we have a broken ls. This can happen
+ # if, for instance, CONFIG_SHELL is bash and it inherits a
+ # broken ls alias from the environment. This has actually
+ # happened. Such a system could not be considered "sane".
+ AC_MSG_ERROR([ls -t appears to fail. Make sure there is not a broken
+alias in your environment])
+ fi
+
+ test "$[2]" = conftest.file
+ )
+then
+ # Ok.
+ :
+else
+ AC_MSG_ERROR([newly created file is older than distributed files!
+Check your system clock])
+fi
+AC_MSG_RESULT(yes)])
+
+# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_PROG_INSTALL_STRIP
+# ---------------------
+# One issue with vendor `install' (even GNU) is that you can't
+# specify the program used to strip binaries. This is especially
+# annoying in cross-compiling environments, where the build's strip
+# is unlikely to handle the host's binaries.
+# Fortunately install-sh will honor a STRIPPROG variable, so we
+# always use install-sh in `make install-strip', and initialize
+# STRIPPROG with the value of the STRIP variable (set by the user).
+AC_DEFUN([AM_PROG_INSTALL_STRIP],
+[AC_REQUIRE([AM_PROG_INSTALL_SH])dnl
+# Installed binaries are usually stripped using `strip' when the user
+# run `make install-strip'. However `strip' might not be the right
+# tool to use in cross-compilation environments, therefore Automake
+# will honor the `STRIP' environment variable to overrule this program.
+dnl Don't test for $cross_compiling = yes, because it might be `maybe'.
+if test "$cross_compiling" != no; then
+ AC_CHECK_TOOL([STRIP], [strip], :)
+fi
+INSTALL_STRIP_PROGRAM="\${SHELL} \$(install_sh) -c -s"
+AC_SUBST([INSTALL_STRIP_PROGRAM])])
+
+# Check how to create a tarball. -*- Autoconf -*-
+
+# Copyright (C) 2004, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 2
+
+# _AM_PROG_TAR(FORMAT)
+# --------------------
+# Check how to create a tarball in format FORMAT.
+# FORMAT should be one of `v7', `ustar', or `pax'.
+#
+# Substitute a variable $(am__tar) that is a command
+# writing to stdout a FORMAT-tarball containing the directory
+# $tardir.
+# tardir=directory && $(am__tar) > result.tar
+#
+# Substitute a variable $(am__untar) that extract such
+# a tarball read from stdin.
+# $(am__untar) < result.tar
+AC_DEFUN([_AM_PROG_TAR],
+[# Always define AMTAR for backward compatibility.
+AM_MISSING_PROG([AMTAR], [tar])
+m4_if([$1], [v7],
+ [am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -'],
+ [m4_case([$1], [ustar],, [pax],,
+ [m4_fatal([Unknown tar format])])
+AC_MSG_CHECKING([how to create a $1 tar archive])
+# Loop over all known methods to create a tar archive until one works.
+_am_tools='gnutar m4_if([$1], [ustar], [plaintar]) pax cpio none'
+_am_tools=${am_cv_prog_tar_$1-$_am_tools}
+# Do not fold the above two line into one, because Tru64 sh and
+# Solaris sh will not grok spaces in the rhs of `-'.
+for _am_tool in $_am_tools
+do
+ case $_am_tool in
+ gnutar)
+ for _am_tar in tar gnutar gtar;
+ do
+ AM_RUN_LOG([$_am_tar --version]) && break
+ done
+ am__tar="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$$tardir"'
+ am__tar_="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$tardir"'
+ am__untar="$_am_tar -xf -"
+ ;;
+ plaintar)
+ # Must skip GNU tar: if it does not support --format= it doesn't create
+ # ustar tarball either.
+ (tar --version) >/dev/null 2>&1 && continue
+ am__tar='tar chf - "$$tardir"'
+ am__tar_='tar chf - "$tardir"'
+ am__untar='tar xf -'
+ ;;
+ pax)
+ am__tar='pax -L -x $1 -w "$$tardir"'
+ am__tar_='pax -L -x $1 -w "$tardir"'
+ am__untar='pax -r'
+ ;;
+ cpio)
+ am__tar='find "$$tardir" -print | cpio -o -H $1 -L'
+ am__tar_='find "$tardir" -print | cpio -o -H $1 -L'
+ am__untar='cpio -i -H $1 -d'
+ ;;
+ none)
+ am__tar=false
+ am__tar_=false
+ am__untar=false
+ ;;
+ esac
+
+ # If the value was cached, stop now. We just wanted to have am__tar
+ # and am__untar set.
+ test -n "${am_cv_prog_tar_$1}" && break
+
+ # tar/untar a dummy directory, and stop if the command works
+ rm -rf conftest.dir
+ mkdir conftest.dir
+ echo GrepMe > conftest.dir/file
+ AM_RUN_LOG([tardir=conftest.dir && eval $am__tar_ >conftest.tar])
+ rm -rf conftest.dir
+ if test -s conftest.tar; then
+ AM_RUN_LOG([$am__untar <conftest.tar])
+ grep GrepMe conftest.dir/file >/dev/null 2>&1 && break
+ fi
+done
+rm -rf conftest.dir
+
+AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool])
+AC_MSG_RESULT([$am_cv_prog_tar_$1])])
+AC_SUBST([am__tar])
+AC_SUBST([am__untar])
+]) # _AM_PROG_TAR
+
Added: packages/h5utils/branches/upstream/current/arrayh4.c
===================================================================
--- packages/h5utils/branches/upstream/current/arrayh4.c (rev 0)
+++ packages/h5utils/branches/upstream/current/arrayh4.c 2007-05-14 18:39:27 UTC (rev 823)
@@ -0,0 +1,235 @@
+/* Copyright (c) 2005 Massachusetts Institute of Technology
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining
+ * a copy of this software and associated documentation files (the
+ * "Software"), to deal in the Software without restriction, including
+ * without limitation the rights to use, copy, modify, merge, publish,
+ * distribute, sublicense, and/or sell copies of the Software, and to
+ * permit persons to whom the Software is furnished to do so, subject to
+ * the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be
+ * included in all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ * IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ * CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ * TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ * SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+ */
+
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "config.h"
+#include "arrayh4.h"
+
+#ifdef VERBOSE
+# define WHEN_VERBOSE(x) x
+#else
+# define WHEN_VERBOSE(x)
+#endif
+
+int arrayh4_create(arrayh4 *b, int32 numtype, intn rank, const int32 *dims)
+{
+ int i;
+
+ b->rank = rank;
+ b->N = 1;
+ for (i = 0; i < rank; ++i) {
+ b->dims[i] = dims[i];
+ b->N *= dims[i];
+ if (numtype == DFNT_FLOAT64)
+ b->scale.d[i] = NULL;
+ else
+ b->scale.f[i] = NULL;
+ }
+ b->numtype = numtype;
+ if (numtype == DFNT_FLOAT64) {
+ b->p.d = (float64 *) malloc(b->N * sizeof(float64));
+ if (!b->p.d)
+ return 0;
+ } else if (numtype == DFNT_FLOAT32) {
+ b->p.f = (float32 *) malloc(b->N * sizeof(float32));
+ if (!b->p.f)
+ return 0;
+ }
+ return 1;
+}
+
+int arrayh4_clone(arrayh4 *b, arrayh4 a)
+{
+ int dim, i;
+
+ i = arrayh4_create(b, a.numtype, a.rank, a.dims);
+
+ if (!i)
+ return 0;
+
+ /* copy the axes scales: */
+
+ if (a.numtype == DFNT_FLOAT64) {
+ for (dim = 0; dim < a.rank; ++dim)
+ if (a.scale.d[dim]) {
+ b->scale.d[dim] = (float64 *) malloc(a.dims[dim] *
+ sizeof(float64));
+ if (!b->scale.d[dim])
+ return 0;
+ for (i = 0; i < a.dims[dim]; ++i)
+ b->scale.d[dim][i] = a.scale.d[dim][i];
+ }
+ }
+ else if (a.numtype == DFNT_FLOAT32) {
+ for (dim = 0; dim < a.rank; ++dim)
+ if (a.scale.f[dim]) {
+ b->scale.f[dim] = (float32 *) malloc(a.dims[dim] *
+ sizeof(float32));
+ if (!b->scale.f[dim])
+ return 0;
+ for (i = 0; i < a.dims[dim]; ++i)
+ b->scale.f[dim][i] = a.scale.f[dim][i];
+ }
+ }
+
+ return 1;
+}
+
+void arrayh4_destroy(arrayh4 a)
+{
+ int i;
+
+ if (a.numtype == DFNT_FLOAT64) {
+ free(a.p.d);
+ for (i = 0; i < a.rank; ++i)
+ free(a.scale.d[i]);
+ }
+ else if (a.numtype == DFNT_FLOAT32) {
+ free(a.p.f);
+ for (i = 0; i < a.rank; ++i)
+ free(a.scale.f[i]);
+ }
+}
+
+int arrayh4_read(char *fname, arrayh4 *a, int require_rank)
+{
+ int32 numtype;
+ intn rank;
+ int32 dims[ARRAYH4_MAX_RANK];
+ int dim;
+
+ WHEN_VERBOSE(printf("Reading arrayh4 from \"%s\"...\n", fname));
+
+ if (require_rank < 0 || require_rank > ARRAYH4_MAX_RANK)
+ return 0;
+
+ DFSDclear();
+ DFSDgetdims(fname, &rank, dims, ARRAYH4_MAX_RANK);
+
+ WHEN_VERBOSE(printf(" rank = %d", rank));
+
+ if (require_rank && require_rank != rank)
+ return 0;
+
+ WHEN_VERBOSE(printf(", dimensions are "));
+
+ for (dim = 0; dim < rank; ++dim) {
+ WHEN_VERBOSE(printf("%s%d", dim ? "x" : "", (int) dims[dim]));
+ }
+
+ WHEN_VERBOSE(printf("\n"));
+
+ DFSDgetNT(&numtype);
+
+ arrayh4_create(a, numtype, rank, dims);
+
+ if (a->numtype == DFNT_FLOAT64) {
+ WHEN_VERBOSE(printf(" double precision\n"));
+ DFSDgetdata(fname, a->rank, a->dims, (VOIDP) a->p.d);
+
+ for (dim = 0; dim < a->rank; ++dim) {
+ a->scale.d[dim] = (float64 *) malloc(a->dims[dim] *
+ sizeof(float64));
+ if (FAIL == DFSDgetdimscale(dim+1, a->dims[dim],
+