[DebianGIS-dev] Bug#600953: gpsprune: Gpsprune simply aborts

Andreas Tille andreas at an3as.eu
Thu Oct 21 19:09:38 UTC 2010


Package: gpsprune
Version: 11-1
Severity: important
Tags: sid

Hi,

yesterday I was perfectly able to edit a GPS track using gpsprune.
Without any change on the system (no apt-get) today gpsprune breaks
even if called with no argument.  On console I get

~$ gpsprune
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGBUS (0x7) at pc=0x00007f5d2382dd9b, pid=9993, tid=140038018230032
#
# JRE version: 6.0_18-b18
# Java VM: OpenJDK 64-Bit Server VM (16.0-b13 mixed mode linux-amd64 )
# Derivative: IcedTea6 1.8.1
# Distribution: Debian GNU/Linux unstable (sid), package 6b18-1.8.1-2
# Problematic frame:
# C  [libc.so.6+0x7ed9b]  memset+0xa5b
#
# An error report file with more information is saved as:
# /home/tillea/hs_err_pid9993.log
#
# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
#   http://icedtea.classpath.org/bugzilla
#
Aborted

The error log file is attached to this mail.

Kind regards and thanks for maintaining gpsprune

    Andreas.

-- System Information:
Debian Release: squeeze/sid
  APT prefers testing
  APT policy: (501, 'testing'), (50, 'unstable'), (5, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.32-5-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages gpsprune depends on:
ii  default-jre [java6-runtime] 1:1.6-40     Standard Java or Java compatible R
ii  libmetadata-extractor-java  2.3.1+dfsg-2 JPEG metadata extraction framework
ii  openjdk-6-jre [java6-runtim 6b18-1.8.1-2 OpenJDK Java runtime, using Hotspo

Versions of packages gpsprune recommends:
ii  gnuplot                     4.4.0-1.1    A command-line driven interactive
ii  gpsbabel                    1.4.0-1      GPS file conversion plus transfer
ii  libimage-exiftool-perl      8.15-1       Library and program to read and wr
ii  libjava3d-java              1.5.2+dfsg-5 Java 3D API (java library)
ii  libjava3d-jni               1.5.2+dfsg-5 Java3D API (java jni library)
ii  libvecmath-java             1.5.2-2      javax.vecmath vector math package

gpsprune suggests no packages.

-- no debconf information
-------------- next part --------------
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGBUS (0x7) at pc=0x00007f5d2382dd9b, pid=9993, tid=140038018230032
#
# JRE version: 6.0_18-b18
# Java VM: OpenJDK 64-Bit Server VM (16.0-b13 mixed mode linux-amd64 )
# Derivative: IcedTea6 1.8.1
# Distribution: Debian GNU/Linux unstable (sid), package 6b18-1.8.1-2
# Problematic frame:
# C  [libc.so.6+0x7ed9b]  memset+0xa5b
#
# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
#   http://icedtea.classpath.org/bugzilla
#

---------------  T H R E A D  ---------------

Current thread is native thread

siginfo:si_signo=SIGBUS: si_errno=0, si_code=2 (BUS_ADRERR), si_addr=0x00007f5d2455c000

Registers:
RAX=0x00007f5d2455c000, RBX=0x00007f5d2455c000, RCX=0x0000000000000000, RDX=0x0000000000000000
RSP=0x00007f5d2454da98, RBP=0x00007f5d2454dbb0, RSI=0x0000000000000000, RDI=0x00007f5d2455c000
R8 =0x0000000000007f80, R9 =0x0000000000080000, R10=0x0000000000000000, R11=0x00007f5d2382d710
R12=0x0000000000008000, R13=0x0000000000000003, R14=0x00007f5d2454e6b8, R15=0x00007f5d2454dae0
RIP=0x00007f5d2382dd9b, EFL=0x0000000000010206, CSGSFS=0x0000000000000033, ERR=0x0000000000000006
  TRAPNO=0x000000000000000e

Top of Stack: (sp=0x00007f5d2454da98)
0x00007f5d2454da98:   00007f5d2328c10e 6e696c004c54504e
0x00007f5d2454daa8:   0000000000002115 0000211523b0be98
0x00007f5d2454dab8:   0000000000eea740 0000000000eea710
0x00007f5d2454dac8:   0000000000eec700 00007f5d2454db78
0x00007f5d2454dad8:   0000000000eec720 0000000000000011
0x00007f5d2454dae8:   0000000000006dcd 0000000000000002
0x00007f5d2454daf8:   000005ae000041ed 000000000000041a
0x00007f5d2454db08:   0000000000000000 000000000000003c
0x00007f5d2454db18:   0000000000001000 0000000000000000
0x00007f5d2454db28:   000000004cc08e63 000000001166ff7b
0x00007f5d2454db38:   000000004cc08e63 000000001166ff7b
0x00007f5d2454db48:   000000004cc08e63 000000001166ff7b
0x00007f5d2454db58:   0000000000000000 0000000000000000
0x00007f5d2454db68:   0000000000000000 00007f5d2454dd70
0x00007f5d2454db78:   0000000000000000 00007f5d2454dba0
0x00007f5d2454db88:   00007f5d23783f60 00007f5d2454de0f
0x00007f5d2454db98:   00007f5d2454de80 00007f5d2454dcf0
0x00007f5d2454dba8:   00007f5d2454dd70 00007f5d2454dbe0
0x00007f5d2454dbb8:   00007f5d2328b8f4 00007f5d2454dbd0
0x00007f5d2454dbc8:   00007f5d22ec6dee 00007f5d2454dbe0
0x00007f5d2454dbd8:   0000000000000000 00007f5d2454ddf0
0x00007f5d2454dbe8:   00007f5d23355a93 0000000000000000
0x00007f5d2454dbf8:   00007f5d24353dda 0000000000000000
0x00007f5d2454dc08:   00007f5d2454dc90 0000000000000000
0x00007f5d2454dc18:   00007f5d2454dc90 0000000000ee5538
0x00007f5d2454dc28:   0000000000000009 00000000a8428197
0x00007f5d2454dc38:   00007f5d24354500 0000000000000000
0x00007f5d2454dc48:   0000000000000017 0000000002a10a06
0x00007f5d2454dc58:   00007f5d237b195c 00007f5d2454ddf0
0x00007f5d2454dc68:   00007f5d237b2c28 00007f5d237b85b0
0x00007f5d2454dc78:   0000000000000000 0000000000000000
0x00007f5d2454dc88:   0000000000000000 00007f5d24553000 

Instructions: (pc=0x00007f5d2382dd9b)
0x00007f5d2382dd8b:   64 0f 1f 40 00 4d 8d 40 80 49 81 f8 80 00 00 00
0x00007f5d2382dd9b:   66 0f 7f 07 66 0f 7f 47 10 66 0f 7f 47 20 66 0f 

Stack: [0x00007f5d2444e000,0x00007f5d2454f000],  sp=0x00007f5d2454da98,  free space=3fe0000000000000038k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C  [libc.so.6+0x7ed9b]  memset+0xa5b
V  [libjvm.so+0x5bd8f4]
V  [libjvm.so+0x687a93]
V  [libjvm.so+0x3fd400]
C  [java+0x299e]  JavaMain+0x7e


---------------  P R O C E S S  ---------------

VM state:not at safepoint (not fully initialized)

VM Mutex/Monitor currently owned by a thread: None

Dynamic libraries:
00400000-00409000 r-xp 00000000 fe:01 28614721                           /usr/lib/jvm/java-6-openjdk/jre/bin/java
00608000-00609000 rw-p 00008000 fe:01 28614721                           /usr/lib/jvm/java-6-openjdk/jre/bin/java
00ee4000-00f05000 rw-p 00000000 00:00 0                                  [heap]
7f5d219c5000-7f5d219d0000 r-xp 00000000 fe:01 9871368                    /lib/libnss_files-2.11.2.so
7f5d219d0000-7f5d21bcf000 ---p 0000b000 fe:01 9871368                    /lib/libnss_files-2.11.2.so
7f5d21bcf000-7f5d21bd0000 r--p 0000a000 fe:01 9871368                    /lib/libnss_files-2.11.2.so
7f5d21bd0000-7f5d21bd1000 rw-p 0000b000 fe:01 9871368                    /lib/libnss_files-2.11.2.so
7f5d21bd1000-7f5d21bdb000 r-xp 00000000 fe:01 9871365                    /lib/libnss_nis-2.11.2.so
7f5d21bdb000-7f5d21dda000 ---p 0000a000 fe:01 9871365                    /lib/libnss_nis-2.11.2.so
7f5d21dda000-7f5d21ddb000 r--p 00009000 fe:01 9871365                    /lib/libnss_nis-2.11.2.so
7f5d21ddb000-7f5d21ddc000 rw-p 0000a000 fe:01 9871365                    /lib/libnss_nis-2.11.2.so
7f5d21ddc000-7f5d21de3000 r-xp 00000000 fe:01 9871378                    /lib/libnss_compat-2.11.2.so
7f5d21de3000-7f5d21fe2000 ---p 00007000 fe:01 9871378                    /lib/libnss_compat-2.11.2.so
7f5d21fe2000-7f5d21fe3000 r--p 00006000 fe:01 9871378                    /lib/libnss_compat-2.11.2.so
7f5d21fe3000-7f5d21fe4000 rw-p 00007000 fe:01 9871378                    /lib/libnss_compat-2.11.2.so
7f5d21fe4000-7f5d21fec000 r-xp 00000000 fe:01 28614692                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/native_threads/libhpi.so
7f5d21fec000-7f5d221eb000 ---p 00008000 fe:01 28614692                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/native_threads/libhpi.so
7f5d221eb000-7f5d221ed000 rw-p 00007000 fe:01 28614692                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/native_threads/libhpi.so
7f5d221ed000-7f5d22202000 r-xp 00000000 fe:01 9871381                    /lib/libnsl-2.11.2.so
7f5d22202000-7f5d22401000 ---p 00015000 fe:01 9871381                    /lib/libnsl-2.11.2.so
7f5d22401000-7f5d22402000 r--p 00014000 fe:01 9871381                    /lib/libnsl-2.11.2.so
7f5d22402000-7f5d22403000 rw-p 00015000 fe:01 9871381                    /lib/libnsl-2.11.2.so
7f5d22403000-7f5d22405000 rw-p 00000000 00:00 0 
7f5d22405000-7f5d22431000 r-xp 00000000 fe:01 28614673                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/libjava.so
7f5d22431000-7f5d22630000 ---p 0002c000 fe:01 28614673                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/libjava.so
7f5d22630000-7f5d22634000 rw-p 0002b000 fe:01 28614673                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/libjava.so
7f5d22634000-7f5d22642000 r-xp 00000000 fe:01 28614689                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/libverify.so
7f5d22642000-7f5d22842000 ---p 0000e000 fe:01 28614689                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/libverify.so
7f5d22842000-7f5d22844000 rw-p 0000e000 fe:01 28614689                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/libverify.so
7f5d22844000-7f5d2284b000 r-xp 00000000 fe:01 9871373                    /lib/librt-2.11.2.so
7f5d2284b000-7f5d22a4a000 ---p 00007000 fe:01 9871373                    /lib/librt-2.11.2.so
7f5d22a4a000-7f5d22a4b000 r--p 00006000 fe:01 9871373                    /lib/librt-2.11.2.so
7f5d22a4b000-7f5d22a4c000 rw-p 00007000 fe:01 9871373                    /lib/librt-2.11.2.so
7f5d22a4c000-7f5d22acc000 r-xp 00000000 fe:01 9871380                    /lib/libm-2.11.2.so
7f5d22acc000-7f5d22ccc000 ---p 00080000 fe:01 9871380                    /lib/libm-2.11.2.so
7f5d22ccc000-7f5d22ccd000 r--p 00080000 fe:01 9871380                    /lib/libm-2.11.2.so
7f5d22ccd000-7f5d22cce000 rw-p 00081000 fe:01 9871380                    /lib/libm-2.11.2.so
7f5d22cce000-7f5d234ea000 r-xp 00000000 fe:01 28614694                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server/libjvm.so
7f5d234ea000-7f5d236e9000 ---p 0081c000 fe:01 28614694                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server/libjvm.so
7f5d236e9000-7f5d23777000 rw-p 0081b000 fe:01 28614694                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server/libjvm.so
7f5d23777000-7f5d237af000 rw-p 00000000 00:00 0 
7f5d237af000-7f5d23907000 r-xp 00000000 fe:01 9871371                    /lib/libc-2.11.2.so
7f5d23907000-7f5d23b06000 ---p 00158000 fe:01 9871371                    /lib/libc-2.11.2.so
7f5d23b06000-7f5d23b0a000 r--p 00157000 fe:01 9871371                    /lib/libc-2.11.2.so
7f5d23b0a000-7f5d23b0b000 rw-p 0015b000 fe:01 9871371                    /lib/libc-2.11.2.so
7f5d23b0b000-7f5d23b10000 rw-p 00000000 00:00 0 
7f5d23b10000-7f5d23b12000 r-xp 00000000 fe:01 9871370                    /lib/libdl-2.11.2.so
7f5d23b12000-7f5d23d12000 ---p 00002000 fe:01 9871370                    /lib/libdl-2.11.2.so
7f5d23d12000-7f5d23d13000 r--p 00002000 fe:01 9871370                    /lib/libdl-2.11.2.so
7f5d23d13000-7f5d23d14000 rw-p 00003000 fe:01 9871370                    /lib/libdl-2.11.2.so
7f5d23d14000-7f5d23d18000 r-xp 00000000 fe:01 28614661                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/jli/libjli.so
7f5d23d18000-7f5d23f17000 ---p 00004000 fe:01 28614661                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/jli/libjli.so
7f5d23f17000-7f5d23f18000 rw-p 00003000 fe:01 28614661                   /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/jli/libjli.so
7f5d23f18000-7f5d23f2f000 r-xp 00000000 fe:01 9871372                    /lib/libpthread-2.11.2.so
7f5d23f2f000-7f5d2412e000 ---p 00017000 fe:01 9871372                    /lib/libpthread-2.11.2.so
7f5d2412e000-7f5d2412f000 r--p 00016000 fe:01 9871372                    /lib/libpthread-2.11.2.so
7f5d2412f000-7f5d24130000 rw-p 00017000 fe:01 9871372                    /lib/libpthread-2.11.2.so
7f5d24130000-7f5d24134000 rw-p 00000000 00:00 0 
7f5d24134000-7f5d2414b000 r-xp 00000000 fe:01 28469323                   /usr/lib/libz.so.1.2.3.4
7f5d2414b000-7f5d2434a000 ---p 00017000 fe:01 28469323                   /usr/lib/libz.so.1.2.3.4
7f5d2434a000-7f5d2434b000 rw-p 00016000 fe:01 28469323                   /usr/lib/libz.so.1.2.3.4
7f5d2434b000-7f5d24369000 r-xp 00000000 fe:01 9871383                    /lib/ld-2.11.2.so
7f5d2444e000-7f5d2444f000 ---p 00000000 00:00 0 
7f5d2444f000-7f5d24554000 rw-p 00000000 00:00 0 
7f5d2455c000-7f5d24564000 rw-s 00000000 00:11 105699                     /tmp/hsperfdata_tillea/9993
7f5d24564000-7f5d24565000 rw-p 00000000 00:00 0 
7f5d24565000-7f5d24566000 r--p 00000000 00:00 0 
7f5d24566000-7f5d24568000 rw-p 00000000 00:00 0 
7f5d24568000-7f5d24569000 r--p 0001d000 fe:01 9871383                    /lib/ld-2.11.2.so
7f5d24569000-7f5d2456a000 rw-p 0001e000 fe:01 9871383                    /lib/ld-2.11.2.so
7f5d2456a000-7f5d2456b000 rw-p 00000000 00:00 0 
7fff45801000-7fff45837000 rw-p 00000000 00:00 0                          [stack]
7fff4585a000-7fff4585b000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]

VM Arguments:
java_command: /usr/share/gpsprune/gpsprune.jar
Launcher Type: SUN_STANDARD

Environment Variables:
PATH=/home/tillea/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
USERNAME=tillea
LD_LIBRARY_PATH=/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server:/usr/lib/jvm/java-6-openjdk/jre/lib/amd64:/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64
SHELL=/bin/bash
DISPLAY=:0.0

Signal Handlers:
SIGSEGV: [libjvm.so+0x6bf670], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x6bf670], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x58a9a0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: [libjvm.so+0x58a9a0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGXFSZ: [libjvm.so+0x58a9a0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x58a9a0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x58a140], sa_mask[0]=0x00000000, sa_flags=0x10000004
SIGHUP: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGINT: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGTERM: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGQUIT: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000


---------------  S Y S T E M  ---------------

OS:squeeze/sid

uname:Linux 2.6.32-5-amd64 #1 SMP Fri Oct 15 00:56:30 UTC 2010 x86_64
libc:glibc 2.11.2 NPTL 2.11.2 
rlimit: STACK 8192k, CORE 0k, NPROC infinity, NOFILE 1024, AS infinity
load average:0.04 0.04 0.03

CPU:total 4 

Memory: 4k page, physical 3854444k(1764824k free), swap 11292664k(11292664k free)

vm_info: OpenJDK 64-Bit Server VM (16.0-b13) for linux-amd64 JRE (1.6.0_18-b18), built on Sep  7 2010 18:16:02 by "buildd" with gcc 4.4.5 20100902 (prerelease)

time: Thu Oct 21 21:02:59 2010
elapsed time: 0 seconds



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