[pysal] branch upstream updated (7de8a1a -> 776b952)
Sebastiaan Couwenberg
sebastic at moszumanska.debian.org
Sat Jun 11 20:44:32 UTC 2016
This is an automated email from the git hooks/post-receive script.
sebastic pushed a change to branch upstream
in repository pysal.
from 7de8a1a Imported Upstream version 1.10+dfsg
new b4b8900 Imported Upstream version 1.11.0
new b37e648 Imported Upstream version 1.11.1
new 776b952 Imported Upstream version 1.11.2
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.github/CONTRIBUTING.md | 2 +
.github/ISSUE_TEMPLATE.md | 30 +
.github/PULL_REQUEST_TEMPLATE.md | 12 +
.gitignore | 24 +
.travis.yml | 29 +-
.travis_testing.sh | 5 +
CHANGELOG.txt | 2530 +
README.md | 106 -
README.rst | 139 +
THANKS.txt | 1 +
doc/source/conf.py | 57 +-
doc/source/developers/guidelines.rst | 38 +-
doc/source/developers/projects.rst | 5 +-
doc/source/developers/py3k.rst | 107 +-
doc/source/developers/release.rst | 55 +-
doc/source/index.rst | 4 +-
doc/source/library/contrib/index.rst | 20 +-
doc/source/library/spreg/index.rst | 1 +
doc/source/references.rst | 1 +
doc/source/users/installation.rst | 2 +-
figs/lisamaps.png | Bin 0 -> 501034 bytes
figs/lisamaps7.png | Bin 0 -> 501034 bytes
pysal/COPYING | 2 +-
pysal/__init__.py | 24 +-
pysal/cg/kdtree.py | 74 +-
pysal/cg/shapes.py | 14 +-
pysal/cg/tests/test_geoJSON.py | 28 +
pysal/common.py | 13 +
pysal/contrib/{README => README.rst} | 38 +-
pysal/contrib/clusterpy/__init__.py | 1 +
pysal/contrib/clusterpy/clusterpy.ipynb | 6735 +-
pysal/contrib/clusterpy/clusterpy_ext.py | 52 +-
pysal/contrib/githooks/pre-commit | 6 +
pysal/contrib/handler/Explaining the Handler.ipynb | 800 +
pysal/contrib/handler/__init__.py | 1 +
pysal/contrib/handler/handler.py | 146 +
pysal/contrib/handler/registry.py | 58 +
.../handler}/tests/test_diagnostics.py | 11 +-
.../handler}/tests/test_diagnostics_sp.py | 11 +-
.../handler}/tests/test_diagnostics_tsls.py | 11 +-
pysal/contrib/handler/tests/test_error_sp.py | 178 +
.../handler}/tests/test_error_sp_regimes.py | 36 +-
.../contrib/handler/tests/test_error_sp_sparse.py | 189 +
.../handler/tests/test_error_spet.py} | 200 +-
.../handler/tests/test_error_spet_regimes.py} | 12 +-
.../handler/tests/test_error_spet_sparse.py} | 204 +-
.../handler/tests/test_error_spom.py} | 157 +-
.../handler/tests/test_error_spom_regimes.py} | 37 +-
.../handler/tests/test_error_spom_sparse.py} | 159 +-
.../handler}/tests/test_ml_error.py | 43 +-
.../handler}/tests/test_ml_error_regimes.py | 66 +-
.../handler}/tests/test_ml_lag.py | 7 +-
.../handler}/tests/test_ml_lag_regimes.py | 10 +-
.../handler/tests/test_ols.py} | 30 +-
.../handler}/tests/test_ols_regimes.py | 10 +-
.../handler}/tests/test_ols_sparse.py | 22 +-
pysal/contrib/handler/tests/test_probit.py | 62 +
.../handler}/tests/test_twosls.py | 102 +-
.../handler}/tests/test_twosls_regimes.py | 10 +-
.../handler}/tests/test_twosls_sp.py | 165 +-
.../handler}/tests/test_twosls_sp_regimes.py | 10 +-
.../handler}/tests/test_twosls_sp_sparse.py | 166 +-
.../handler}/tests/test_twosls_sparse.py | 103 +-
pysal/contrib/pdutilities/__init__.py | 4 +
pysal/contrib/pdutilities/dbf_utilities.py | 4 -
pysal/contrib/pdutilities/file_utilities.py | 65 +
pysal/contrib/pdutilities/shp_utilities.py | 21 +
pysal/contrib/viz/folium_mapping.ipynb | 2116 +-
pysal/contrib/viz/folium_mapping.py | 14 +-
pysal/contrib/viz/mapping.py | 63 +-
pysal/contrib/viz/mapping_guide.ipynb | 642 +-
pysal/core/IOHandlers/arcgis_swm.py | 4 +-
pysal/core/IOHandlers/csvWrapper.py | 5 +-
pysal/core/IOHandlers/pyDbfIO.py | 35 +-
pysal/core/IOHandlers/pyShpIO.py | 6 +-
pysal/core/IOHandlers/tests/test_csvWrapper.py | 10 +-
pysal/core/IOHandlers/tests/test_pyDbfIO.py | 50 +-
pysal/core/IOHandlers/wk1.py | 2 +-
pysal/core/Tables.py | 49 +-
pysal/core/util/shapefile.py | 32 +-
pysal/core/util/tests/test_shapefile.py | 27 +-
pysal/core/util/wkb.py | 230 +
pysal/core/util/wkt.py | 8 -
pysal/esda/gamma.py | 20 +-
pysal/esda/mapclassify.py | 538 +-
pysal/esda/moran.py | 266 +-
pysal/esda/smoothing.py | 16 +-
pysal/esda/tests/test_mapclassify.py | 66 +-
pysal/esda/tests/test_moran.py | 32 +-
pysal/examples/10740/10740.dbf | Bin 0 -> 8188 bytes
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pysal/examples/10740/10740.shx | Bin 0 -> 1660 bytes
pysal/examples/10740/10740_queen.gal | 391 +
pysal/examples/10740/10740_rook.gal | 391 +
pysal/examples/10740/README.md | 13 +
pysal/examples/Line/Line.dbf | Bin 0 -> 621 bytes
pysal/examples/Line/Line.prj | 1 +
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pysal/examples/Line/README.md | 7 +
pysal/examples/Point/Point.dbf | Bin 0 -> 1236 bytes
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pysal/examples/Point/Point.shx | Bin 0 -> 172 bytes
pysal/examples/Polygon/Polygon.dbf | Bin 0 -> 498 bytes
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pysal/examples/Polygon/README.md | 7 +
pysal/examples/README.txt | 5 +
pysal/examples/__init__.py | 77 +
pysal/examples/arcgis/README.md | 7 +
pysal/examples/arcgis/arcgis_ohio.dbf | Bin 0 -> 21876 bytes
pysal/examples/arcgis/arcgis_txt.txt | 9 +
pysal/examples/baltim/README.md | 16 +
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pysal/examples/baltim/baltim.tri.k12.kwt | 2744 +
pysal/examples/baltim/baltim_k4.gwt | 845 +
pysal/examples/baltim/baltim_q.gal | 423 +
pysal/examples/baltim/baltimore.geojson | 218 +
pysal/examples/book/README.md | 10 +
pysal/examples/book/book.gal | 33 +
pysal/examples/book/book.txt | 18 +
pysal/examples/burkitt/README.md | 11 +
pysal/examples/burkitt/burkitt.dbf | Bin 0 -> 7558 bytes
pysal/examples/burkitt/burkitt.shp | Bin 0 -> 5364 bytes
.../crimes.shx => examples/burkitt/burkitt.shx} | Bin 2396 -> 1604 bytes
pysal/examples/calemp/README.md | 15 +
pysal/examples/calemp/calempdensity.csv | 59 +
pysal/examples/chicago/Chicago77.dbf | Bin 0 -> 16787 bytes
pysal/examples/chicago/Chicago77.shp | Bin 0 -> 687568 bytes
pysal/examples/chicago/Chicago77.shx | Bin 0 -> 716 bytes
pysal/examples/chicago/README.md | 11 +
pysal/examples/columbus/columbus.dbf | Bin 0 -> 10082 bytes
pysal/examples/columbus/columbus.gal | 99 +
pysal/examples/columbus/columbus.html | 132 +
pysal/examples/columbus/columbus.json | 104 +
pysal/examples/columbus/columbus.shp | Bin 0 -> 21980 bytes
pysal/examples/columbus/columbus.shx | Bin 0 -> 492 bytes
pysal/examples/desmith/README.md | 13 +
pysal/examples/desmith/desmith.gal | 21 +
pysal/examples/desmith/desmith.txt | 12 +
.../examples.rst => pysal/examples/examples.txt | 1 -
pysal/examples/geodanet/README.md | 26 +
.../network => examples/geodanet}/crimes.dbf | Bin
pysal/examples/geodanet/crimes.prj | 1 +
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pysal/examples/geodanet/crimes.sbx | Bin 0 -> 428 bytes
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pysal/examples/geodanet/crimes.shp.xml | 3 +
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pysal/examples/geodanet/schools.dbf | Bin 0 -> 146 bytes
pysal/examples/geodanet/schools.prj | 1 +
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pysal/examples/geodanet/schools.shp.xml | 546 +
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.../network => examples/geodanet}/streets.dbf | Bin
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pysal/examples/geodanet/streets.sbx | Bin 0 -> 540 bytes
.../network => examples/geodanet}/streets.shp | Bin
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pysal/examples/juvenile/README.md | 14 +
pysal/examples/juvenile/juvenile.dbf | Bin 0 -> 4834 bytes
pysal/examples/juvenile/juvenile.gwt | 2803 +
pysal/examples/juvenile/juvenile.shp | Bin 0 -> 4804 bytes
.../crimes.shx => examples/juvenile/juvenile.shx} | Bin 2396 -> 1444 bytes
pysal/examples/mexico/README.md | 15 +
pysal/examples/mexico/mexico.csv | 33 +
pysal/examples/mexico/mexico.gal | 65 +
pysal/examples/nat/NAT.dbf | Bin 0 -> 2501092 bytes
pysal/examples/nat/NAT.shp | Bin 0 -> 1462216 bytes
pysal/examples/nat/NAT.shx | Bin 0 -> 24780 bytes
pysal/examples/nat/nat.geojson | 3092 +
pysal/examples/nat/nat_queen.gal | 6171 ++
pysal/examples/nat/nat_queen_old.gal | 6171 ++
pysal/examples/nat/nat_trian_k20.kwt | 64786 +++++++++++++++++++
pysal/examples/nat/natregimes.dbf | Bin 0 -> 2627705 bytes
pysal/examples/nat/natregimes.shp | Bin 0 -> 1462216 bytes
pysal/examples/nat/natregimes.shx | Bin 0 -> 24780 bytes
pysal/examples/networks/eberly_net.dbf | Bin 0 -> 1348 bytes
.../networks/eberly_net.shp} | Bin
.../networks/eberly_net.shx} | Bin
.../networks/eberly_net_pts_offnetwork.dbf | Bin 0 -> 2197 bytes
.../networks/eberly_net_pts_offnetwork.shp | Bin 0 -> 2900 bytes
.../networks/eberly_net_pts_offnetwork.shx | Bin 0 -> 900 bytes
.../examples/networks/eberly_net_pts_onnetwork.dbf | Bin 0 -> 1275 bytes
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.../examples/networks/eberly_net_pts_onnetwork.shx | Bin 0 -> 980 bytes
pysal/examples/networks/nonplanarsegments.dbf | Bin 0 -> 87 bytes
pysal/examples/networks/nonplanarsegments.prj | 1 +
pysal/examples/networks/nonplanarsegments.qpj | 1 +
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pysal/examples/networks/nonplanarsegments.shx | Bin 0 -> 116 bytes
pysal/examples/newHaven/new_haven_merged.dbf | Bin 0 -> 1320686 bytes
pysal/examples/newHaven/new_haven_merged.shp | Bin 0 -> 92304 bytes
pysal/examples/newHaven/new_haven_merged.shx | Bin 0 -> 26444 bytes
pysal/examples/newHaven/newhaven_nework.dbf | Bin 0 -> 206183 bytes
pysal/examples/newHaven/newhaven_nework.prj | 1 +
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pysal/examples/sacramento2/sacramentot2.dbf | Bin 0 -> 98149 bytes
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pysal/examples/sids2/README.md | 14 +
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pysal/examples/sids2/sids2.gal | 201 +
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pysal/examples/snow_maps/SohoPeople.dbf | Bin 0 -> 3662 bytes
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pysal/examples/south/south_q.gal | 2825 +
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pysal/examples/stl/stl.gal | 157 +
pysal/examples/stl/stl_hom.csv | 79 +
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pysal/examples/stl/stl_hom.txt | 80 +
pysal/examples/stl/stl_hom.wkt | 78 +
pysal/examples/stl/stl_hom_rook.gal | 157 +
pysal/examples/street_net_pts/street_net_pts.dbf | Bin 0 -> 3398 bytes
pysal/examples/street_net_pts/street_net_pts.prj | 1 +
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pysal/examples/test_examples.py | 21 +
pysal/examples/us_income/README.md | 10 +
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pysal/examples/us_income/usjoin.csv | 49 +
pysal/examples/virginia/README.md | 10 +
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pysal/examples/virginia/virginia.gal | 273 +
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pysal/examples/wmat/geobugs_scot | 66 +
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pysal/examples/wmat/spat-sym-us.mat | Bin 0 -> 416 bytes
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pysal/examples/wmat/spdep_listw2WB_columbus | 59 +
pysal/examples/wmat/stata_full.txt | 57 +
pysal/examples/wmat/stata_sparse.txt | 57 +
pysal/examples/wmat/wmat.dat | 232 +
pysal/examples/wmat/wmat.mtx | 237 +
pysal/meta/wmd.py | 80 +-
pysal/network/tests/test_network.py | 5 +-
pysal/region/maxp.py | 26 +-
pysal/region/tests/test_maxp.py | 16 +-
pysal/spatial_dynamics/interaction.py | 4 +-
pysal/spatial_dynamics/markov.py | 12 +-
pysal/spatial_dynamics/tests/test_markov.py | 11 +-
pysal/spreg/__init__.py | 3 +
pysal/spreg/diagnostics.py | 4 +-
pysal/spreg/diagnostics_sur.py | 221 +
pysal/spreg/ml_error.py | 83 +-
pysal/spreg/ml_error_regimes.py | 5 +-
pysal/spreg/ml_lag.py | 72 +-
pysal/spreg/ml_lag_regimes.py | 3 +
pysal/spreg/ols.py | 7 +-
pysal/spreg/opt.py | 92 +
pysal/spreg/optional_imports.ipynb | 278 +
pysal/spreg/probit.py | 322 +-
pysal/spreg/regimes.py | 6 +-
pysal/spreg/summary_output.py | 284 +-
pysal/spreg/sur.py | 697 +
pysal/spreg/sur_error.py | 549 +
pysal/spreg/sur_lag.py | 366 +
pysal/spreg/sur_utils.py | 363 +
pysal/spreg/tests/test_diagnostics.py | 52 +-
pysal/spreg/tests/test_diagnostics_sp.py | 44 +-
pysal/spreg/tests/test_diagnostics_tsls.py | 10 +-
pysal/spreg/tests/test_error_sp.py | 192 +-
pysal/spreg/tests/test_error_sp_het.py | 207 +-
pysal/spreg/tests/test_error_sp_het_regimes.py | 161 +-
pysal/spreg/tests/test_error_sp_het_sparse.py | 207 +-
pysal/spreg/tests/test_error_sp_hom.py | 229 +-
pysal/spreg/tests/test_error_sp_hom_regimes.py | 165 +-
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pysal/spreg/tests/test_error_sp_sparse.py | 196 +-
pysal/spreg/tests/test_ml_error.py | 40 +-
pysal/spreg/tests/test_ml_error_regimes.py | 61 +-
pysal/spreg/tests/test_ml_lag.py | 35 +-
pysal/spreg/tests/test_ml_lag_regimes.py | 53 +-
pysal/spreg/tests/test_ols.py | 119 +-
pysal/spreg/tests/test_ols_regimes.py | 108 +-
pysal/spreg/tests/test_ols_sparse.py | 105 +-
pysal/spreg/tests/test_probit.py | 69 +-
pysal/spreg/tests/test_sur.py | 172 +
pysal/spreg/tests/test_sur_error.py | 123 +
pysal/spreg/tests/test_sur_lag.py | 176 +
pysal/spreg/tests/test_twosls.py | 117 +-
pysal/spreg/tests/test_twosls_regimes.py | 86 +-
pysal/spreg/tests/test_twosls_sp.py | 141 +-
pysal/spreg/tests/test_twosls_sp_regimes.py | 144 +-
pysal/spreg/tests/test_twosls_sp_sparse.py | 144 +-
pysal/spreg/tests/test_twosls_sparse.py | 121 +-
pysal/spreg/twosls.py | 17 +-
pysal/spreg/user_output.py | 6 +-
pysal/spreg/utils.py | 132 +-
pysal/version.py | 4 +-
pysal/weights/Contiguity.py | 8 +-
pysal/weights/Distance.py | 74 +-
pysal/weights/_contW_binning.py | 10 +-
pysal/weights/spatial_lag.py | 117 +-
pysal/weights/tests/test_Distance.py | 69 +-
pysal/weights/tests/test_Wsets.py | 28 +-
pysal/weights/tests/test_spatial_lag.py | 28 +-
pysal/weights/tests/test_user.py | 42 +-
pysal/weights/tests/test_util.py | 7 +
pysal/weights/tests/test_weights.py | 69 +-
pysal/weights/user.py | 17 +-
pysal/weights/util.py | 101 +-
pysal/weights/weights.py | 12 +-
setup.py | 61 +-
tools/bump.py | 84 +
tools/spregsync | 47 +
370 files changed, 116631 insertions(+), 8918 deletions(-)
create mode 100644 .github/CONTRIBUTING.md
create mode 100644 .github/ISSUE_TEMPLATE.md
create mode 100644 .github/PULL_REQUEST_TEMPLATE.md
create mode 100644 .travis_testing.sh
delete mode 100644 README.md
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