[pysal] 02/06: Merge tag 'upstream/1.12.0'
Bas Couwenberg
sebastic at debian.org
Fri Sep 30 10:55:47 UTC 2016
This is an automated email from the git hooks/post-receive script.
sebastic pushed a commit to branch master
in repository pysal.
commit 6e531ddb84338b80667b0f6017ed4d859fd4be04
Merge: 17304ff 9f42f73
Author: Bas Couwenberg <sebastic at xs4all.nl>
Date: Fri Sep 30 11:45:36 2016 +0200
Merge tag 'upstream/1.12.0'
Upstream version 1.12.0
.travis.yml | 29 +-
.travis_testing.sh | 2 +-
CHANGELOG.txt | 112 +
doc/source/conf.py | 4 +-
doc/source/index.rst | 2 +-
doc/source/library/contrib/index.rst | 10 +-
doc/source/library/spreg/index.rst | 2 +
doc/source/library/spreg/sur.rst | 12 +
doc/source/library/spreg/sur_error.rst | 12 +
doc/source/library/spreg/sur_lag.rst | 12 +
pysal/.gitignore | 10 +
pysal/__init__.py | 23 +-
pysal/cg/comparators.py | 153 +
pysal/cg/shapes.py | 40 +-
pysal/cg/sphere.py | 152 +-
pysal/cg/tests/test_sphere.py | 109 +
pysal/common.py | 96 +-
pysal/contrib/README.rst | 10 +-
pysal/contrib/geotable/__init__.py | 1 +
pysal/contrib/geotable/config.py | 64 +
pysal/contrib/geotable/io.py | 38 +
pysal/contrib/geotable/ops/__init__.py | 2 +
pysal/contrib/geotable/ops/_accessors.py | 45 +
pysal/contrib/geotable/ops/_shapely.py | 174 +
pysal/contrib/geotable/ops/atomic.py | 10 +
pysal/contrib/geotable/ops/tabular.py | 118 +
.../geotable/ops}/tests/__init__.py | 0
pysal/contrib/geotable/ops/tests/test_accessors.py | 356 +
pysal/contrib/geotable/ops/tests/test_shapely.py | 215 +
pysal/contrib/geotable/ops/tests/test_tabular.py | 72 +
.../geotable}/tests/__init__.py | 0
pysal/contrib/geotable/tests/test_utils.py | 13 +
pysal/contrib/geotable/utils.py | 70 +
pysal/contrib/glm/README.md | 30 +
pysal/contrib/glm/__init__.py | 4 +
pysal/contrib/glm/base.py | 408 +
pysal/contrib/glm/family.py | 1845 +++
pysal/contrib/glm/glm.py | 365 +
pysal/contrib/glm/iwls.py | 79 +
pysal/contrib/glm/links.py | 953 ++
pysal/contrib/glm/tests/test_glm.py | 993 ++
pysal/contrib/glm/utils.py | 350 +
pysal/contrib/glm/varfuncs.py | 284 +
pysal/contrib/network/klincs.py | 18 +-
pysal/contrib/network/lincs.py | 52 +-
pysal/contrib/pdio/__init__.py | 4 +
.../{pdutilities/dbf_utilities.py => pdio/dbf.py} | 0
.../file_utilities.py => pdio/file.py} | 4 +-
.../{pdutilities/shp_utilities.py => pdio/shp.py} | 0
pysal/contrib/pdutilities/__init__.py | 4 -
pysal/contrib/shapely_ext.py | 4 +-
pysal/contrib/spint/README.md | 48 +-
pysal/contrib/spint/__init__.py | 6 +
pysal/contrib/spint/count_model.py | 191 +
pysal/contrib/spint/dispersion.py | 102 +
pysal/contrib/spint/gravity.py | 1670 ++-
pysal/contrib/spint/gravity_stats.py | 144 -
pysal/contrib/spint/notebooks/4d_distance.ipynb | 531 +
pysal/contrib/spint/notebooks/Gaussian_SAR.ipynb | 791 ++
pysal/contrib/spint/notebooks/IV_FLOWS.ipynb | 195 +
.../contrib/spint/notebooks/NYC_Bike_Example.ipynb | 661 +
.../contrib/spint/notebooks/New_DistanceBand.ipynb | 326 +
pysal/contrib/spint/notebooks/ODW_example.ipynb | 288 +
pysal/contrib/spint/notebooks/OD_weights.ipynb | 254 +
pysal/contrib/spint/notebooks/Vec_SA_Test.ipynb | 389 +
pysal/contrib/spint/notebooks/autograd_test.ipynb | 128 +
.../contrib/spint/notebooks/dispersion_test.ipynb | 455 +
.../examples/Example_NYCBikes_AllFeatures.ipynb | 919 ++
pysal/contrib/spint/notebooks/glm_speed.ipynb | 360 +
pysal/contrib/spint/notebooks/local_SI.ipynb | 232 +
pysal/contrib/spint/notebooks/netW.ipynb | 305 +
.../spint/notebooks/sparse_categorical.ipynb | 184 +
.../notebooks/sparse_categorical_bottleneck.ipynb | 79 +
.../spint/notebooks/sparse_categorical_speed.ipynb | 596 +
pysal/contrib/spint/notebooks/sparse_grav.ipynb | 457 +
.../spint/notebooks/sparse_scipy_optim.ipynb | 165 +
.../spint/notebooks/sparse_vs_dense_grav.ipynb | 499 +
pysal/contrib/spint/notebooks/test_grav.ipynb | 293 +
.../contrib/spint/notebooks/validate_gravity.ipynb | 966 ++
pysal/contrib/spint/tests/test_count_model.py | 87 +
pysal/contrib/spint/tests/test_dispersion.py | 47 +
pysal/contrib/spint/tests/test_gravity.py | 803 +-
pysal/contrib/spint/tests/test_gravity_stats.py | 193 -
pysal/contrib/spint/tests/test_vec_SA.py | 54 +
pysal/contrib/spint/utils.py | 120 +
pysal/contrib/spint/vec_SA.py | 342 +
pysal/contrib/viz/plot.py | 52 +
pysal/core/IOHandlers/__init__.py | 5 +
pysal/core/IOHandlers/db.py | 88 +
pysal/core/IOHandlers/geoda_txt.py | 2 +-
pysal/core/IOHandlers/pyDbfIO.py | 6 +-
pysal/core/IOHandlers/tests/test_db.py | 55 +
pysal/core/Tables.py | 23 +-
pysal/core/tests/test_Tables.py | 29 +
pysal/esda/gamma.py | 25 +-
pysal/esda/geary.py | 53 +-
pysal/esda/getisord.py | 111 +-
pysal/esda/join_counts.py | 60 +-
pysal/esda/mapclassify.py | 308 +-
pysal/esda/mixture_smoothing.py | 12 +-
pysal/esda/moran.py | 394 +-
pysal/esda/smoothing.py | 481 +-
pysal/esda/tabular.py | 306 +
pysal/esda/tests/test_gamma.py | 31 +-
pysal/esda/tests/test_geary.py | 25 +-
pysal/esda/tests/test_getisord.py | 30 +-
pysal/esda/tests/test_join_counts.py | 27 +-
pysal/esda/tests/test_mapclassify.py | 35 +-
pysal/esda/tests/test_moran.py | 70 +-
pysal/esda/tests/test_smoothing.py | 399 +-
pysal/examples/Polygon_Holes/Polygon_Holes.cpg | 1 +
pysal/examples/Polygon_Holes/Polygon_Holes.dbf | Bin 0 -> 498 bytes
pysal/examples/Polygon_Holes/Polygon_Holes.prj | 1 +
pysal/examples/Polygon_Holes/Polygon_Holes.qpj | 1 +
pysal/examples/Polygon_Holes/Polygon_Holes.shp | Bin 0 -> 1528 bytes
pysal/examples/Polygon_Holes/Polygon_Holes.shx | Bin 0 -> 124 bytes
pysal/examples/nyc_bikes/nyc_bikes_ct.csv | 14043 +++++++++++++++++++
pysal/examples/nyc_bikes/nyct2010.dbf | Bin 0 -> 381602 bytes
pysal/examples/nyc_bikes/nyct2010.prj | 1 +
pysal/examples/nyc_bikes/nyct2010.shp | Bin 0 -> 2648092 bytes
pysal/examples/nyc_bikes/nyct2010.shp.xml | 1 +
pysal/examples/nyc_bikes/nyct2010.shx | Bin 0 -> 17428 bytes
pysal/inequality/gini.py | 89 +-
pysal/inequality/tests/test_gini.py | 33 +
pysal/network/Network_Usage.ipynb | 689 +
pysal/network/analysis.py | 50 +-
pysal/network/network.py | 541 +-
pysal/network/tests/test_network.py | 15 +-
pysal/network/util.py | 130 +-
pysal/spatial_dynamics/markov.py | 648 +-
pysal/spatial_dynamics/tests/test_markov.py | 107 +-
pysal/spreg/diagnostics_sur.py | 60 +-
pysal/spreg/ml_error.py | 23 +-
pysal/spreg/ml_lag.py | 24 +-
pysal/spreg/sputils.py | 275 +
pysal/spreg/sur.py | 155 +-
pysal/spreg/tests/skip.py | 6 +
pysal/spreg/tests/test_diagnostics.py | 1 -
pysal/spreg/tests/test_ml_error.py | 73 +-
pysal/spreg/tests/test_ml_error_regimes.py | 6 +-
pysal/spreg/tests/test_ml_lag.py | 65 +-
pysal/spreg/tests/test_ml_lag_regimes.py | 7 +-
pysal/spreg/tests/test_sputils.py | 134 +
pysal/spreg/tests/test_sur_error.py | 32 +-
pysal/spreg/user_output.py | 39 +-
pysal/spreg/utils.py | 228 +-
pysal/version.py | 4 +-
pysal/weights/Contiguity.py | 429 +-
pysal/weights/Distance.py | 541 +-
pysal/weights/Wsets.py | 4 +-
pysal/weights/__init__.py | 5 -
pysal/weights/_contW_binning.py | 205 +-
pysal/weights/_contW_lists.py | 90 +
pysal/weights/_contW_rtree.py | 10 -
pysal/weights/spintW.py | 254 +
pysal/weights/tests/test_Contiguity.py | 145 +-
pysal/weights/tests/test_Distance.py | 421 +-
pysal/weights/tests/test__contW_binning.py | 10 +-
...test__contW_binning.py => test__contW_lists.py} | 10 +-
pysal/weights/tests/test_spintW.py | 173 +
pysal/weights/tests/test_weights.py | 4 +-
pysal/weights/user.py | 171 +-
pysal/weights/util.py | 49 +-
pysal/weights/weights.py | 76 +-
pysal/weights/weights_from_geojson.ipynb | 311 -
requirements_plus.txt | 12 +
setup.py | 4 +-
tools/github_stats.py | 7 +-
travis.txt | 4 +-
169 files changed, 39545 insertions(+), 3744 deletions(-)
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