r1920 - in trunk/cdk/debian: . cdk-manpages
Egon Willighagen
egonw-guest at costa.debian.org
Fri Feb 17 08:51:19 UTC 2006
Author: egonw-guest
Date: 2006-02-17 08:51:18 +0000 (Fri, 17 Feb 2006)
New Revision: 1920
Added:
trunk/cdk/debian/cdk-manpages/
trunk/cdk/debian/cdk-manpages/cdk-dbadmin.xml
trunk/cdk/debian/cdk-manpages/cdk-download.xml
trunk/cdk/debian/cdk-manpages/cdk-fileconvert.xml
trunk/cdk/debian/cdk-manpages/cdk-fingerprinter.xml
trunk/cdk/debian/cdk-manpages/cdk-guessformat.xml
trunk/cdk/debian/cdk-manpages/cdk-iupacname.xml
trunk/cdk/debian/cdk-manpages/cdk-substructure.xml
trunk/cdk/debian/cdk-manpages/cdk-test.xml
trunk/cdk/debian/cdk-manpages/cdk-validate.xml
trunk/cdk/debian/cdk-manpages/cdk-view.xml
Log:
Added missing XML sources of the manual pages
Added: trunk/cdk/debian/cdk-manpages/cdk-dbadmin.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-dbadmin.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-dbadmin.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,123 @@
+<refentry id="cdk-dbadmin">
+
+ <refmeta>
+ <refentrytitle>cdk-dbadmin</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-dbadmin</refname>
+ <refpurpose>administrate chemical database</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-dbadmin</command>
+ <arg>--useHost [hostname]</arg>
+ <arg>--useDatabase [database name]</arg>
+ <arg>--useDriver [mysql|postgresql]</arg>
+ <arg>--username [username]</arg>
+ <arg>--passwd [pwd]</arg>
+ <arg>--createDefaultTables</arg>
+ <arg>--listTables</arg>
+ <arg>--deleteTables</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>OPTIONS</title>
+ <variablelist>
+ <varlistentry>
+ <term>--useHost [hostname]</term>
+ <listitem>
+ <para>sets the hostname of the machine on which the database is run</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--useDatabase [database name]</term>
+ <listitem>
+ <para>sets the name of the database in which the tables are stored</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--useDriver [mysql|postgresql]</term>
+ <listitem>
+ <para>sets the JDBC driver used to access the database (Only MySQL is currently working.)</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--username [username]</term>
+ <listitem>
+ <para>sets the username of the account with which the database can be accessed</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--passwd [pwd]</term>
+ <listitem>
+ <para>sets the password for the account with which the database can be accessed</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--createDefaultTables</term>
+ <listitem>
+ <para>create the default tables in the chemical database</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--listTables</term>
+ <listitem>
+ <para>lists all information on the tables in the chemical database</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--deleteTables</term>
+ <listitem>
+ <para>deletes all tables from the chemical database</para>
+ </listitem>
+ </varlistentry>
+ </variablelist>
+ </refsect1>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-dbadmin</command> is used to prepare and delete tables from
+ a chemical database.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-dbadmin.xml,v 1.1 2002/08/31 14:43:07 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2001-2002 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
+
Added: trunk/cdk/debian/cdk-manpages/cdk-download.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-download.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-download.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,73 @@
+<refentry id="cdk-download">
+
+ <refmeta>
+ <refentrytitle>cdk-download</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-download</refname>
+ <refpurpose>download chemical information from the internet</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-download</command>
+ <arg>CAS NUMBER</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>OPTIONS</title>
+ <variablelist>
+ <varlistentry>
+ <term>CAS NUMBER</term>
+ <listitem>
+ <para>CAS number of the structure you want to download</para>
+ </listitem>
+ </varlistentry>
+ </variablelist>
+ </refsect1>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-download</command> retrieves the 2D coordiante file
+ of the requested compound.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-download.xml,v 1.1 2002/08/31 14:43:07 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2002 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Added: trunk/cdk/debian/cdk-manpages/cdk-fileconvert.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-fileconvert.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-fileconvert.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,111 @@
+<refentry id="cdk-fileconvert">
+
+ <refmeta>
+ <refentrytitle>cdk-fileconvert</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-fileconvert</refname>
+ <refpurpose>converts one or more files to another format</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-fileconvert</command>
+ <arg>OPTIONS</arg>
+ <arg>input files</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>OPTIONS</title>
+ <variablelist>
+ <varlistentry>
+ <term>-h/--help</term>
+ <listitem>
+ <para>Print the help</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>-o[format]/--outputformat:[format]</term>
+ <listitem>
+ <para>Defines the output format to use. (See below for a list of
+ possible formats)</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--quesion:[none|fewest|some|all]</term>
+ <listitem>
+ <para>Defines the level of customization of the file IO.</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--listoptions:[format]</term>
+ <listitem>
+ <para>Lists the options of customization of the given file format.</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--properties:[format]</term>
+ <listitem>
+ <para>Use a Java properties file to define the file IO option
+ values.</para>
+ </listitem>
+ </varlistentry>
+ </variablelist>
+ </refsect1>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-fileconvert</command> reads a input file and converts
+ it to a new file with an other format.
+ Supported input formats are
+ <acronym>CML</acronym>,
+ <acronym>MDL Molfile</acronym>,
+ <acronym>PDB</acronym>,
+ <acronym>PMP</acronym>,
+ <acronym>SHELX</acronym> and
+ <acronym>XYZ</acronym>. The input format is automatically detected.
+ </para>
+ <para>
+ Supported output formats are: cml, gin, mol, pdb, shelx, smi, svg and
+ xyz.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-fileconvert.xml,v 1.3 2003/07/03 08:48:56 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2001-2003 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Property changes on: trunk/cdk/debian/cdk-manpages/cdk-fileconvert.xml
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/cdk/debian/cdk-manpages/cdk-fingerprinter.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-fingerprinter.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-fingerprinter.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,61 @@
+<refentry id="cdk-fingerprinter">
+
+ <refmeta>
+ <refentrytitle>cdk-fingerprinter</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-fingerprinter</refname>
+ <refpurpose>generates CDK fingerprints for the given molecules</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-fingerprinter</command>
+ <arg>file</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-fingerprinter</command> reads one or more input files
+ and generates CDK fingerprints for all the molecules it finds.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-fingerprinter.xml,v 1.1 2004/01/12 11:50:58 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2003-2004 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Property changes on: trunk/cdk/debian/cdk-manpages/cdk-fingerprinter.xml
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/cdk/debian/cdk-manpages/cdk-guessformat.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-guessformat.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-guessformat.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,61 @@
+<refentry id="cdk-guessformat">
+
+ <refmeta>
+ <refentrytitle>cdk-guessformat</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-guessformat</refname>
+ <refpurpose>guesses the file format of a file</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-guessformat</command>
+ <arg>file</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-guessformat</command> reads an input file and tries
+ to determine the file format.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-guessformat.xml,v 1.1 2003/05/27 14:33:52 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2003 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Property changes on: trunk/cdk/debian/cdk-manpages/cdk-guessformat.xml
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/cdk/debian/cdk-manpages/cdk-iupacname.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-iupacname.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-iupacname.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,67 @@
+<refentry id="cdk-iupacname">
+
+ <refmeta>
+ <refentrytitle>cdk-iupacname</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-iupacname</refname>
+ <refpurpose>generates the IUPAC name for the given molecule</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-iupacname</command>
+ <arg>file</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-iupacname</command> reads an input file and tries
+ to generate a IUPAC name for this structure. Currently only
+ a few IUPAC rules are implemented, but simple alkane structures
+ can be named.
+ </para>
+ <para>
+ The output language can be set using <arg>--dutch</arg> or
+ <arg>--german</arg>.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-iupacname.xml,v 1.1 2003/08/15 08:13:40 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2003 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Property changes on: trunk/cdk/debian/cdk-manpages/cdk-iupacname.xml
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/cdk/debian/cdk-manpages/cdk-substructure.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-substructure.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-substructure.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,64 @@
+<refentry id="cdk-substructure">
+
+ <refmeta>
+ <refentrytitle>cdk-substructure</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-substructure</refname>
+ <refpurpose>searches through a set of files to find a given
+ substructure</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-substructure</command>
+ <arg>SMILES</arg>
+ <arg>files</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-substructure</command> reads one or more an input files
+ and determines wether the structure given by the SMILES (after removal
+ of hydrogens) is a substructure of the input file.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-substructure.xml,v 1.1 2003/08/15 08:13:40 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2003 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Property changes on: trunk/cdk/debian/cdk-manpages/cdk-substructure.xml
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/cdk/debian/cdk-manpages/cdk-test.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-test.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-test.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,61 @@
+<refentry id="cdk-test">
+
+ <refmeta>
+ <refentrytitle>cdk-test</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-test</refname>
+ <refpurpose>perform JUnit tests on CDK classes</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-test</command> <arg>JUnit test</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-test</command> opens up a JUnit window for testing
+ CDK classes. The optional argument is used to set the JUnit test
+ that is loaded, e.g. org.openscience.cdk.test.CDKTests.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-test.xml,v 1.1 2003/01/01 16:42:09 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2001-2003 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Added: trunk/cdk/debian/cdk-manpages/cdk-validate.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-validate.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-validate.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,62 @@
+<refentry id="cdk-validate">
+
+ <refmeta>
+ <refentrytitle>cdk-validate</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-validate</refname>
+ <refpurpose>checks the chemical content of a file</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-validate</command>
+ <arg>file</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-validate</command> reads an input file and checks wether
+ the chemistry that is described in that file is correct, or might contain
+ problems.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-validate.xml,v 1.1 2003/07/14 20:57:59 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2003 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
Property changes on: trunk/cdk/debian/cdk-manpages/cdk-validate.xml
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/cdk/debian/cdk-manpages/cdk-view.xml
===================================================================
--- trunk/cdk/debian/cdk-manpages/cdk-view.xml 2006-02-16 17:17:06 UTC (rev 1919)
+++ trunk/cdk/debian/cdk-manpages/cdk-view.xml 2006-02-17 08:51:18 UTC (rev 1920)
@@ -0,0 +1,92 @@
+<refentry id="cdk-view">
+
+ <refmeta>
+ <refentrytitle>cdk-view</refentrytitle>
+ <manvolnum>1</manvolnum>
+ </refmeta>
+
+ <refnamediv>
+ <refname>cdk-view</refname>
+ <refpurpose>view content of chemical file</refpurpose>
+ </refnamediv>
+
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>cdk-view</command> <arg>--nojava3d</arg> <arg>--no3d</arg> <arg>--useJmol</arg> <arg>file.xml</arg>
+ <command>cdk-view</command> <arg>--smiles</arg> <arg>SMILES</arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+
+ <refsect1>
+ <title>OPTIONS</title>
+ <variablelist>
+ <varlistentry>
+ <term>--nojava3d</term>
+ <listitem>
+ <para>do not try to use Java3D for viewing 3D coordinates</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--no3d</term>
+ <listitem>
+ <para>do not view 3D coordinates</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--smiles</term>
+ <listitem>
+ <para>show a 2D representation of the SMILES</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term>--useTree</term>
+ <listitem>
+ <para>shows a ChemObjectTree of the loaded file</para>
+ </listitem>
+ </varlistentry>
+ </variablelist>
+ </refsect1>
+
+ <refsect1>
+ <title>DESCRIPTION</title>
+ <para>
+ <command>cdk-view</command> displays to content of the file
+ <filename>file.xml</filename> with the format CML, IChI, MDLMol,
+ PDB and XYZ.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>VERSION</title>
+ <para>
+ $Id: cdk-view.xml,v 1.3 2003/01/01 16:42:09 egonw Exp $
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>COPYRIGHT</title>
+ <para>
+ Copyright (C) 2001-2002 The CDK Project
+ </para>
+ <para>
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version.
+ </para>
+ <para>
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+ </para>
+ </refsect1>
+
+ <refsect1>
+ <title>AUTHOR</title>
+ <para>
+ Egon Willighagen <email>egonw at sci.kun.nl</email>
+ </para>
+ </refsect1>
+
+</refentry>
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