Bug#963435: cdk: FTBFS: [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project cdk-isomorphism: Compilation failure: Compilation failure:
Lucas Nussbaum
lucas at debian.org
Sun Jun 21 21:26:40 BST 2020
Source: cdk
Version: 1:2.3-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build
> dh_update_autotools_config
> dh_autoreconf
> dh_auto_configure
> mh_patchpoms -plibcdk-java --debian-build --keep-pom-version --maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo
> dh_auto_build
> /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US
> WARNING: An illegal reflective access operation has occurred
> WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/share/maven/lib/guice.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
> WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1
> WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
> WARNING: All illegal access operations will be denied in a future release
> [INFO] Scanning for projects...
> [WARNING] The project org.openscience.cdk:cdk:pom:2.3 uses prerequisites which is only intended for maven-plugin projects but not for non maven-plugin projects. For such purposes you should use the maven-enforcer-plugin. See https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html
> [INFO] ------------------------------------------------------------------------
> [INFO] Reactor Build Order:
> [INFO]
> [INFO] cdk [pom]
> [INFO] cdk-base [pom]
> [INFO] cdk-interfaces [jar]
> [INFO] cdk-core [jar]
> [INFO] cdk-standard [jar]
> [INFO] cdk-atomtype [jar]
> [INFO] cdk-valencycheck [jar]
> [INFO] cdk-misc [pom]
> [INFO] cdk-diff [jar]
> [INFO] cdk-data [jar]
> [INFO] cdk-silent [jar]
> [INFO] cdk-datadebug [jar]
> [INFO] cdk-isomorphism [jar]
> [INFO] cdk-dict [jar]
> [INFO] cdk-storage [pom]
> [INFO] cdk-ioformats [jar]
> [INFO] cdk-ctab [jar]
> [INFO] cdk-io [jar]
> [INFO] cdk-tool [pom]
> [INFO] cdk-formula [jar]
> [INFO] cdk-pdb [jar]
> [INFO] cdk-libiocml [jar]
> [INFO] cdk-smiles [jar]
> [INFO] cdk-extra [jar]
> [INFO] cdk-reaction [jar]
> [INFO] cdk-smarts [jar]
> [INFO] cdk-descriptor [pom]
> [INFO] cdk-fingerprint [jar]
> [INFO] cdk-cip [jar]
> [INFO] cdk-signature [jar]
> [INFO] cdk-charges [jar]
> [INFO] cdk-forcefield [jar]
> [INFO] cdk-sdg [jar]
> [INFO] cdk-builder3dtools [jar]
> [INFO] cdk-builder3d [jar]
> [INFO] cdk-qsar [jar]
> [INFO] cdk-display [pom]
> [INFO] cdk-render [jar]
> [INFO] cdk-inchi [jar]
> [INFO] cdk-qsaratomic [jar]
> [INFO] cdk-qsarbond [jar]
> [INFO] cdk-hash [jar]
> [INFO] cdk-fragment [jar]
> [INFO] cdk-qsarmolecular [jar]
> [INFO] cdk-qsarcml [jar]
> [INFO] cdk-qsarprotein [jar]
> [INFO] cdk-qsarsubstance [jar]
> [INFO] cdk-renderbasic [jar]
> [INFO] cdk-renderawt [jar]
> [INFO] cdk-renderextra [jar]
> [INFO] cdk-control [jar]
> [INFO] cdk-log4j [jar]
> [INFO] cdk-libiomd [jar]
> [INFO] cdk-pdbcml [jar]
> [INFO] cdk-group [jar]
> [INFO] cdk-pcore [jar]
> [INFO] cdk-structgen [jar]
> [INFO] cdk-tautomer [jar]
> [INFO] cdk-model [jar]
> [INFO] cdk-app [pom]
> [INFO]
> [INFO] ----------------------< org.openscience.cdk:cdk >-----------------------
> [INFO] Building cdk 2.3 [1/60]
> [INFO] --------------------------------[ pom ]---------------------------------
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-base >--------------------
> [INFO] Building cdk-base 2.3 [2/60]
> [INFO] --------------------------------[ pom ]---------------------------------
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-base ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] -----------------< org.openscience.cdk:cdk-interfaces >-----------------
> [INFO] Building cdk-interfaces 2.3 [3/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-interfaces ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/base/interfaces/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-interfaces ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 80 source files to /<<PKGBUILDDIR>>/base/interfaces/target/classes
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-interfaces ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-interfaces ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-interfaces ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-interfaces ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/interfaces/target/cdk-interfaces-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-interfaces ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-core >--------------------
> [INFO] Building cdk-core 2.3 [4/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-core ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] Copying 1 resource
> [INFO] Copying 7 resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-core ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 81 source files to /<<PKGBUILDDIR>>/base/core/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/config/AtomTypeFactory.java: Some input files use or override a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/config/AtomTypeFactory.java: Recompile with -Xlint:deprecation for details.
> [INFO] /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java: Some input files use unchecked or unsafe operations.
> [INFO] /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java: Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-core ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-core ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-core ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-core ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/core/target/cdk-core-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-core ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ------------------< org.openscience.cdk:cdk-standard >------------------
> [INFO] Building cdk-standard 2.3 [5/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-standard ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] Copying 1 resource
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-standard ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 90 source files to /<<PKGBUILDDIR>>/base/standard/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: Some input files use or override a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: Recompile with -Xlint:deprecation for details.
> [INFO] /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/geometry/BondTools.java: Some input files use unchecked or unsafe operations.
> [INFO] /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/geometry/BondTools.java: Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-standard ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-standard ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-standard ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-standard ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/standard/target/cdk-standard-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-standard ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ------------------< org.openscience.cdk:cdk-atomtype >------------------
> [INFO] Building cdk-atomtype 2.3 [6/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-atomtype ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] Copying 7 resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-atomtype ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 5 source files to /<<PKGBUILDDIR>>/base/atomtype/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java: /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java uses or overrides a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java: Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-atomtype ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-atomtype ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-atomtype ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-atomtype ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/atomtype/target/cdk-atomtype-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-atomtype ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ----------------< org.openscience.cdk:cdk-valencycheck >----------------
> [INFO] Building cdk-valencycheck 2.3 [7/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-valencycheck ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/base/valencycheck/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-valencycheck ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 7 source files to /<<PKGBUILDDIR>>/base/valencycheck/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java: /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java uses or overrides a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java: Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-valencycheck ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-valencycheck ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-valencycheck ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-valencycheck ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/valencycheck/target/cdk-valencycheck-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-valencycheck ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-misc >--------------------
> [INFO] Building cdk-misc 2.3 [8/60]
> [INFO] --------------------------------[ pom ]---------------------------------
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-misc ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-diff >--------------------
> [INFO] Building cdk-diff 2.3 [9/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-diff ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/misc/diff/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-diff ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 24 source files to /<<PKGBUILDDIR>>/misc/diff/target/classes
> [INFO] /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java uses or overrides a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-diff ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-diff ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-diff ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-diff ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/misc/diff/target/cdk-diff-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-diff ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-data >--------------------
> [INFO] Building cdk-data 2.3 [10/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-data ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/base/data/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-data ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 40 source files to /<<PKGBUILDDIR>>/base/data/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/Atom.java: Some input files use or override a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/Atom.java: Recompile with -Xlint:deprecation for details.
> [INFO] /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: Some input files use unchecked or unsafe operations.
> [INFO] /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-data ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-data ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-data ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-data ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/data/target/cdk-data-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-data ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] -------------------< org.openscience.cdk:cdk-silent >-------------------
> [INFO] Building cdk-silent 2.3 [11/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-silent ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/base/silent/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-silent ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 38 source files to /<<PKGBUILDDIR>>/base/silent/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/Bond.java: Some input files use or override a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/Bond.java: Recompile with -Xlint:deprecation for details.
> [INFO] /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: Some input files use unchecked or unsafe operations.
> [INFO] /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-silent ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-silent ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-silent ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-silent ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/silent/target/cdk-silent-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-silent ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] -----------------< org.openscience.cdk:cdk-datadebug >------------------
> [INFO] Building cdk-datadebug 2.3 [12/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-datadebug ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/base/datadebug/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-datadebug ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 37 source files to /<<PKGBUILDDIR>>/base/datadebug/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugAtomContainer.java: Some input files use or override a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugAtomContainer.java: Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cdk-datadebug ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-datadebug ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-datadebug ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-datadebug ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/datadebug/target/cdk-datadebug-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-datadebug ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ----------------< org.openscience.cdk:cdk-isomorphism >-----------------
> [INFO] Building cdk-isomorphism 2.3 [13/60]
> [INFO] --------------------------------[ jar ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cdk-isomorphism ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/base/isomorphism/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-isomorphism ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 32 source files to /<<PKGBUILDDIR>>/base/isomorphism/target/classes
> [INFO] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtom.java: Some input files use or override a deprecated API.
> [INFO] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtom.java: Recompile with -Xlint:deprecation for details.
> [INFO] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainer.java: Some input files use unchecked or unsafe operations.
> [INFO] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainer.java: Recompile with -Xlint:unchecked for details.
> [INFO] -------------------------------------------------------------
> [ERROR] COMPILATION ERROR :
> [INFO] -------------------------------------------------------------
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/QueryStereoFilter.java:[59,7] org.openscience.cdk.isomorphism.QueryStereoFilter is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueBondMatches.java:[47,7] org.openscience.cdk.isomorphism.UniqueBondMatches is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/StereoMatch.java:[58,7] org.openscience.cdk.isomorphism.StereoMatch is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/ComponentFilter.java:[61,7] org.openscience.cdk.isomorphism.ComponentFilter is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/AtomMapFilter.java:[69,7] org.openscience.cdk.isomorphism.AtomMapFilter is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueAtomMatches.java:[47,7] org.openscience.cdk.isomorphism.UniqueAtomMatches is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [INFO] 6 errors
> [INFO] -------------------------------------------------------------
> [INFO] ------------------------------------------------------------------------
> [INFO] Reactor Summary for cdk 2.3:
> [INFO]
> [INFO] cdk ................................................ SUCCESS [ 0.292 s]
> [INFO] cdk-base ........................................... SUCCESS [ 0.004 s]
> [INFO] cdk-interfaces ..................................... SUCCESS [ 1.235 s]
> [INFO] cdk-core ........................................... SUCCESS [ 1.513 s]
> [INFO] cdk-standard ....................................... SUCCESS [ 0.954 s]
> [INFO] cdk-atomtype ....................................... SUCCESS [ 0.110 s]
> [INFO] cdk-valencycheck ................................... SUCCESS [ 0.117 s]
> [INFO] cdk-misc ........................................... SUCCESS [ 0.002 s]
> [INFO] cdk-diff ........................................... SUCCESS [ 0.135 s]
> [INFO] cdk-data ........................................... SUCCESS [ 0.517 s]
> [INFO] cdk-silent ......................................... SUCCESS [ 0.444 s]
> [INFO] cdk-datadebug ...................................... SUCCESS [ 0.545 s]
> [INFO] cdk-isomorphism .................................... FAILURE [ 0.191 s]
> [INFO] cdk-dict ........................................... SKIPPED
> [INFO] cdk-storage ........................................ SKIPPED
> [INFO] cdk-ioformats ...................................... SKIPPED
> [INFO] cdk-ctab ........................................... SKIPPED
> [INFO] cdk-io ............................................. SKIPPED
> [INFO] cdk-tool ........................................... SKIPPED
> [INFO] cdk-formula ........................................ SKIPPED
> [INFO] cdk-pdb ............................................ SKIPPED
> [INFO] cdk-libiocml ....................................... SKIPPED
> [INFO] cdk-smiles ......................................... SKIPPED
> [INFO] cdk-extra .......................................... SKIPPED
> [INFO] cdk-reaction ....................................... SKIPPED
> [INFO] cdk-smarts ......................................... SKIPPED
> [INFO] cdk-descriptor ..................................... SKIPPED
> [INFO] cdk-fingerprint .................................... SKIPPED
> [INFO] cdk-cip ............................................ SKIPPED
> [INFO] cdk-signature ...................................... SKIPPED
> [INFO] cdk-charges ........................................ SKIPPED
> [INFO] cdk-forcefield ..................................... SKIPPED
> [INFO] cdk-sdg ............................................ SKIPPED
> [INFO] cdk-builder3dtools ................................. SKIPPED
> [INFO] cdk-builder3d ...................................... SKIPPED
> [INFO] cdk-qsar ........................................... SKIPPED
> [INFO] cdk-display ........................................ SKIPPED
> [INFO] cdk-render ......................................... SKIPPED
> [INFO] cdk-inchi .......................................... SKIPPED
> [INFO] cdk-qsaratomic ..................................... SKIPPED
> [INFO] cdk-qsarbond ....................................... SKIPPED
> [INFO] cdk-hash ........................................... SKIPPED
> [INFO] cdk-fragment ....................................... SKIPPED
> [INFO] cdk-qsarmolecular .................................. SKIPPED
> [INFO] cdk-qsarcml ........................................ SKIPPED
> [INFO] cdk-qsarprotein .................................... SKIPPED
> [INFO] cdk-qsarsubstance .................................. SKIPPED
> [INFO] cdk-renderbasic .................................... SKIPPED
> [INFO] cdk-renderawt ...................................... SKIPPED
> [INFO] cdk-renderextra .................................... SKIPPED
> [INFO] cdk-control ........................................ SKIPPED
> [INFO] cdk-log4j .......................................... SKIPPED
> [INFO] cdk-libiomd ........................................ SKIPPED
> [INFO] cdk-pdbcml ......................................... SKIPPED
> [INFO] cdk-group .......................................... SKIPPED
> [INFO] cdk-pcore .......................................... SKIPPED
> [INFO] cdk-structgen ...................................... SKIPPED
> [INFO] cdk-tautomer ....................................... SKIPPED
> [INFO] cdk-model .......................................... SKIPPED
> [INFO] cdk-app ............................................ SKIPPED
> [INFO] ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
> [INFO] ------------------------------------------------------------------------
> [INFO] Total time: 6.408 s
> [INFO] Finished at: 2020-06-21T07:29:04Z
> [INFO] ------------------------------------------------------------------------
> [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project cdk-isomorphism: Compilation failure: Compilation failure:
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/QueryStereoFilter.java:[59,7] org.openscience.cdk.isomorphism.QueryStereoFilter is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueBondMatches.java:[47,7] org.openscience.cdk.isomorphism.UniqueBondMatches is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/StereoMatch.java:[58,7] org.openscience.cdk.isomorphism.StereoMatch is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/ComponentFilter.java:[61,7] org.openscience.cdk.isomorphism.ComponentFilter is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/AtomMapFilter.java:[69,7] org.openscience.cdk.isomorphism.AtomMapFilter is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueAtomMatches.java:[47,7] org.openscience.cdk.isomorphism.UniqueAtomMatches is not abstract and does not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] -> [Help 1]
> [ERROR]
> [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> [ERROR]
> [ERROR] For more information about the errors and possible solutions, please read the following articles:
> [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
> [ERROR]
> [ERROR] After correcting the problems, you can resume the build with the command
> [ERROR] mvn <args> -rf :cdk-isomorphism
> dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
> make: *** [debian/rules:4: build] Error 25
The full build log is available from:
http://qa-logs.debian.net/2020/06/20/cdk_2.3-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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