[Pkg-openmpi-maintainers] Bug#584353: rmpi: FTBFS: ORTE errors

[Dirk Eddelbuettel]

On 3 June 2010 at 12:10, Lucas Nussbaum wrote:
| Source: rmpi
| Version: 0.5-8-1
| Severity: serious
| Tags: squeeze sid
| User: debian-qa at lists.debian.org
| Usertags: qa-ftbfs-20100602 qa-ftbfs
| Justification: FTBFS on amd64
| 
| Hi,
| 
| During a rebuild of all packages in sid, your package failed to build on
| amd64.

Thanks --- I noticed the same failure at my cran2deb autobuild of all of CRAN
with Rmpi and npRmpi (which embeds Rmpi).  I presume something changed in
Open MPI amd I now have to prefix the 'R CMD INSTALL ....' command with
orterun to provide a MPI context.  I'll try that in my pbuilder first.

Dirk
 
| Relevant part:
| > make[1]: Entering directory `/build/user-rmpi_0.5-8-1-amd64-7BvXv7/rmpi-0.5-8/src'
| > make[1]: Leaving directory `/build/user-rmpi_0.5-8-1-amd64-7BvXv7/rmpi-0.5-8/src'
| > installing to /build/user-rmpi_0.5-8-1-amd64-7BvXv7/rmpi-0.5-8/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi/libs
| > ** R
| > ** demo
| > ** inst
| > ** preparing package for lazy loading
| > ** help
| > *** installing help indices
| > ** building package indices ...
| > ** testing if installed package can be loaded
| > [bordereau-62.bordeaux.grid5000.fr:31433] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 269
| > [bordereau-62.bordeaux.grid5000.fr:31433] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 143
| > [bordereau-62.bordeaux.grid5000.fr:31433] [[INVALID],INVALID] ORTE_ERROR_LOG: A system-required executable either could not be found or was not executable by this user in file ../../../orte/runtime/orte_init.c at line 132
| > --------------------------------------------------------------------------
| > It looks like orte_init failed for some reason; your parallel process is
| > likely to abort.  There are many reasons that a parallel process can
| > fail during orte_init; some of which are due to configuration or
| > environment problems.  This failure appears to be an internal failure;
| > here's some additional information (which may only be relevant to an
| > Open MPI developer):
| > 
| >   orte_ess_set_name failed
| >   --> Returned value A system-required executable either could not be found or was not executable by this user (-127) instead of ORTE_SUCCESS
| > --------------------------------------------------------------------------
| > --------------------------------------------------------------------------
| > It looks like MPI_INIT failed for some reason; your parallel process is
| > likely to abort.  There are many reasons that a parallel process can
| > fail during MPI_INIT; some of which are due to configuration or environment
| > problems.  This failure appears to be an internal failure; here's some
| > additional information (which may only be relevant to an Open MPI
| > developer):
| > 
| >   ompi_mpi_init: orte_init failed
| >   --> Returned "A system-required executable either could not be found or was not executable by this user" (-127) instead of "Success" (0)
| > --------------------------------------------------------------------------
| > *** An error occurred in MPI_Init
| > *** before MPI was initialized
| > *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort)
| > [bordereau-62.bordeaux.grid5000.fr:31433] Abort before MPI_INIT completed successfully; not able to guarantee that all other processes were killed!
| > make: *** [R_any_arch] Error 1
| 
| The full build log is available from:
|    http://people.debian.org/~lucas/logs/2010/06/02/rmpi_0.5-8-1_lsid64.buildlog
| 
| A list of current common problems and possible solutions is available at 
| http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
| 
| About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
| of the Grid'5000 platform, using a clean chroot.  Internet was not
| accessible from the build systems.
| 
| -- 
| | Lucas Nussbaum
| | lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| | jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |
| 
| 

-- 
  Regards, Dirk