r31676 - in /branches/upstream/libbio-primerdesigner-perl/current: ./ lib/Bio/ lib/Bio/PrimerDesigner/ scripts/
plessy at users.alioth.debian.org
plessy at users.alioth.debian.org
Sun Mar 8 04:58:47 UTC 2009
Author: plessy
Date: Sun Mar 8 04:58:08 2009
New Revision: 31676
URL: http://svn.debian.org/wsvn/pkg-perl/?sc=1&rev=31676
Log:
[svn-upgrade] Integrating new upstream version, libbio-primerdesigner-perl (0.05)
Added:
branches/upstream/libbio-primerdesigner-perl/current/Makefile
Modified:
branches/upstream/libbio-primerdesigner-perl/current/README
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner.pm
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Remote.pm
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Result.pm
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Tables.pm
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/epcr.pm
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/ispcr.pm
branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/primer3.pm
branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer
branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer.cgi
Added: branches/upstream/libbio-primerdesigner-perl/current/Makefile
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/Makefile?rev=31676&op=file
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/Makefile (added)
+++ branches/upstream/libbio-primerdesigner-perl/current/Makefile Sun Mar 8 04:58:08 2009
@@ -1,0 +1,79 @@
+# PREREQ_PM => { Class::Base=>q[0], LWP::UserAgent=>q[0], HTTP::Response=>q[0], HTTP::Request=>q[0], Readonly=>q[0] }
+
+all : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1
+realclean : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 realclean
+ /usr/bin/perl -e unlink -e shift Makefile
+
+force_do_it :
+ @ true
+build : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 build
+clean : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 clean
+code : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 code
+config_data : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 config_data
+diff : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 diff
+dist : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 dist
+distcheck : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 distcheck
+distclean : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 distclean
+distdir : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 distdir
+distmeta : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 distmeta
+distsign : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 distsign
+disttest : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 disttest
+docs : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 docs
+fakeinstall : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 fakeinstall
+help : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 help
+html : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 html
+install : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 install
+manifest : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 manifest
+manpages : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 manpages
+pardist : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 pardist
+ppd : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 ppd
+ppmdist : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 ppmdist
+prereq_report : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 prereq_report
+pure_install : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 pure_install
+retest : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 retest
+skipcheck : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 skipcheck
+test : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 test
+testall : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 testall
+testcover : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 testcover
+testdb : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 testdb
+testpod : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 testpod
+testpodcoverage : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 testpodcoverage
+versioninstall : force_do_it
+ /usr/bin/perl Build --makefile_env_macros 1 versioninstall
+
+.EXPORT : INC PREFIX DESTDIR VERBINST INSTALLDIRS TEST_VERBOSE LIB UNINST INSTALL_BASE POLLUTE
+
Modified: branches/upstream/libbio-primerdesigner-perl/current/README
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/README?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/README (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/README Sun Mar 8 04:58:08 2009
@@ -114,7 +114,7 @@
LICENSE
This program is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
- Free Software Foundation; version 2.
+ Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -123,7 +123,7 @@
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
- 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
SEE ALSO
Bio::PrimerDesigner::primer3, Bio::PrimerDesigner::epcr.
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner.pm Sun Mar 8 04:58:08 2009
@@ -404,7 +404,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -413,7 +413,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Remote.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Remote.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Remote.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Remote.pm Sun Mar 8 04:58:08 2009
@@ -122,7 +122,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -131,7 +131,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Result.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Result.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Result.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Result.pm Sun Mar 8 04:58:08 2009
@@ -214,7 +214,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -223,7 +223,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Tables.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Tables.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Tables.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/Tables.pm Sun Mar 8 04:58:08 2009
@@ -340,7 +340,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -349,7 +349,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/epcr.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/epcr.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/epcr.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/epcr.pm Sun Mar 8 04:58:08 2009
@@ -297,7 +297,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -306,7 +306,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/ispcr.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/ispcr.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/ispcr.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/ispcr.pm Sun Mar 8 04:58:08 2009
@@ -308,7 +308,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -317,7 +317,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/primer3.pm
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/primer3.pm?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/primer3.pm (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/lib/Bio/PrimerDesigner/primer3.pm Sun Mar 8 04:58:08 2009
@@ -540,7 +540,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -549,7 +549,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
Modified: branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer Sun Mar 8 04:58:08 2009
@@ -205,7 +205,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -214,7 +214,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=cut
Modified: branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer.cgi
URL: http://svn.debian.org/wsvn/pkg-perl/branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer.cgi?rev=31676&op=diff
==============================================================================
--- branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer.cgi (original)
+++ branches/upstream/libbio-primerdesigner-perl/current/scripts/primer_designer.cgi Sun Mar 8 04:58:08 2009
@@ -102,7 +102,7 @@
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
-the Free Software Foundation; version 2.
+the Free Software Foundation; version 3 or any later version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
@@ -111,7 +111,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
+Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
USA.
=head1 SEE ALSO
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