[Pkg-scicomp-devel] Bug#561384: proposed upgrade to 5.1.7 that fixes ptscotch compilation

[Christophe Trophime]

On Dec 21, 2009, at 9:23 PM, Christophe Prud'homme wrote:

> Hi Christophe
>
> thanks for the contribution
>
> have you tried building the package with pbuilder ?
Not I just tried with pdebuild after reading this message.

It fails to build ptscotch It seems that mpicc is not found, so gcc   
is used instead
giving some compilations errors :

make[2]: Entering directory `/tmp/buildd/scotch-5.1.7.dfsg/src/ 
libscotch'
rm -f *~ *.o lib*.a common2* parser_yy.c parser_ly.h parser_ll.c  
*scotch.h *scotchf.h y.output dummysizes
make CFLAGS="-g -O3 -I. -fPIC -Drestrict=__restrict - 
DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED - 
DSCOTCH_PTHREAD -DSCOTCH_RENAME -DSCOTCH_PTSCOTCH" CC="mpic
c" SCOTCHLIB=ptscotch	\
					scotch.h									\
					scotchf.h									\
					libptscotcherr.a								\
					libptscotch.a								\
					libptscotcherrexit.a
make[3]: Entering directory `/tmp/buildd/scotch-5.1.7.dfsg/src/ 
libscotch'
gcc -I/usr/lib/openmpi/include -g -O3 -I. -fPIC -Drestrict=__restrict - 
DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED - 
DSCOTCH_PTHREAD -DSCOTCH_RENAME -DSCOTCH_
PTSCOTCH -DSCOTCH_VERSION=\""5.1"\" dummysizes.c -o dummysizes -lz -lm  
-lrt
In file included from dummysizes.c:80:
common.h:84:28: error: mpi.h: No such file or directory
In file included from dummysizes.c:82:
graph.h:136: error: expected specifier-qualifier-list before 'MPI_Comm'
In file included from dummysizes.c:85:
arch.h:193: error: expected declaration specifiers or '...' before  
'MPI_Datatype'
In file included from dummysizes.c:89:
dgraph.h:167: error: expected specifier-qualifier-list before 'MPI_Comm'
dgraph.h:187: error: expected declaration specifiers or '...' before  
'MPI_Comm'
In file included from dummysizes.c:89:
dgraph.h:202: error: expected declaration specifiers or '...' before  
'MPI_Datatype'
dgraph.h:203: error: expected declaration specifiers or '...' before  
'MPI_Comm'
dgraph.h:203: error: expected declaration specifiers or '...' before  
'MPI_Datatype'
dgraph.h:204: error: expected declaration specifiers or '...' before  
'MPI_Datatype'
dgraph.h:215: error: expected declaration specifiers or '...' before  
'MPI_Datatype'
In file included from dummysizes.c:90:
dgraph_halo.h:68: error: expected specifier-qualifier-list before  
'MPI_Datatype'
In file included from dummysizes.c:92:
dorder.h:150: error: expected specifier-qualifier-list before 'MPI_Comm'
dorder.h:165: error: expected declaration specifiers or '...' before  
'MPI_Comm'
dorder.h:186: error: expected declaration specifiers or '...' before  
'MPI_Comm'
make[3]: *** [dummysizes] Error 1
make[3]: Leaving directory `/tmp/buildd/scotch-5.1.7.dfsg/src/libscotch'
make[2]: *** [ptscotch] Error 2
make[2]: Leaving directory `/tmp/buildd/scotch-5.1.7.dfsg/src/libscotch'
make[1]: *** [ptscotch] Error 2
make[1]: Leaving directory `/tmp/buildd/scotch-5.1.7.dfsg/src'
make: *** [debian/stamp-makefile-build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: unmounting dev/pts filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//12096 and its  
subdirectories


I think that's because I forgot to libopenmpi-dev to
the dependencies in the control file

>
> C.
>
> On Fri, Dec 18, 2009 at 11:32 AM, trophime
> <christophe.trophime at grenoble.cnrs.fr> wrote:
>> Hi,
>> I attached a proposed upgrade to scotch to latest version version.
>> It is now possible to include ptscotch which solves #561384
>>
>> The attachement is a svn diff of my changes.
>>
>>
>>
>> _______________________________________________
>> Pkg-scicomp-devel mailing list
>> Pkg-scicomp-devel at lists.alioth.debian.org
>> http://lists.alioth.debian.org/mailman/listinfo/pkg-scicomp-devel
>>

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