[Pkg-scicomp-devel] Bug#532693: libsuitesparse-dev and libsofa1-dev: error when trying to install together

Wed Jun 10 19:25:33 UTC 2009

Package: libsofa1-dev,libsuitesparse-dev
Version: libsofa1-dev/1.0~beta4-1
Version: libsuitesparse-dev/1:3.4.0-1
Severity: serious
User: treinen at debian.org
Usertags: edos-file-overwrite

Date: 2009-06-10
Architecture: amd64
Distribution: sid

Hi,

automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:

WARNING: The following packages cannot be authenticated!
  x11-common libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxfixes3 libice6
  libsm6 libxt6 libmagic1 file libpcre3 libxml2 perl-modules perl ucf defoma
  libexpat1 libfreetype6 ttf-dejavu-core ttf-dejavu-extra ttf-dejavu
  fontconfig-config libfontconfig1 fontconfig libdrm2 libxdamage1 libxext6
  libxxf86vm1 libgl1-mesa-glx libglu1-mesa freeglut3 libamd2.2.0 libaudio2
  libgfortran3 libblas3gf libblas-dev libboost-thread1.38.0 libbtf1.1.0
  libcamd2.2.0 libccolamd2.7.1 libcolamd2.7.1 liblapack3gf libcholmod1.7.1
  libcsparse2.2.3 libcxsparse2.2.3 libxi6 libxmu6 libglew1.5 libglib2.0-0
  libjpeg62 libklu1.1.0 liblapack-dev liblcms1 libldl2.0.1 libmng1
  libnewmat10ldbl libpng12-0 libqtcore4 libqt4-xml libqt4-dbus libqt4-script
  libtiff4 libxrender1 libqtgui4 libqt4-designer libqt4-network libqt4-opengl
  libqt4-sql libqt4-qt3support libqt4-svg libqwt5-qt4 libsofa1 libsofa1-dev
  libumfpack5.4.0 libsuitesparse-dev

Extracting templates from packages: 38%
Extracting templates from packages: 77%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package x11-common.
(Reading database ... 8198 files and directories currently installed.)
Unpacking x11-common (from .../x11-common_1%3a7.4+2_all.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.4-2_amd64.deb) ...
Selecting previously deselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.2-3_amd64.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.3-2_amd64.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.2.1-1_all.deb) ...
Selecting previously deselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.2.1-1_amd64.deb) ...
dpkg: warning: obsolete option '--print-installation-architecture', please use '--print-architecture' instead.
Processing triggers for man-db ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up x11-common (1:7.4+2) ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package libxfixes3.
(Reading database ... 8501 files and directories currently installed.)
Unpacking libxfixes3 (from .../libxfixes3_1%3a4.0.3-2_amd64.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.5-1_amd64.deb) ...
Selecting previously deselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.1.0-2_amd64.deb) ...
Selecting previously deselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.0.5-3_amd64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.03-1_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../archives/file_5.03-1_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_7.8-2_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.3.dfsg-1_amd64.deb) ...
Selecting previously deselected package perl-modules.
Unpacking perl-modules (from .../perl-modules_5.10.0-22_all.deb) ...
Selecting previously deselected package perl.
Unpacking perl (from .../perl_5.10.0-22_amd64.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../archives/ucf_3.0018_all.deb) ...
Moving old data out of the way
Selecting previously deselected package defoma.
Unpacking defoma (from .../defoma_0.11.10-0.2_all.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-4_amd64.deb) ...
Selecting previously deselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.3.9-5_amd64.deb) ...
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.29-2_all.deb) ...
Selecting previously deselected package ttf-dejavu-extra.
Unpacking ttf-dejavu-extra (from .../ttf-dejavu-extra_2.29-2_all.deb) ...
Selecting previously deselected package ttf-dejavu.
Unpacking ttf-dejavu (from .../ttf-dejavu_2.29-2_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.6.0-3_all.deb) ...
Selecting previously deselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.6.0-3_amd64.deb) ...
Selecting previously deselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.6.0-3_amd64.deb) ...
Selecting previously deselected package libdrm2.
Unpacking libdrm2 (from .../libdrm2_2.4.11-1_amd64.deb) ...
Selecting previously deselected package libxdamage1.
Unpacking libxdamage1 (from .../libxdamage1_1%3a1.1.1-4_amd64.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.0.4-1_amd64.deb) ...
Selecting previously deselected package libxxf86vm1.
Unpacking libxxf86vm1 (from .../libxxf86vm1_1%3a1.0.2-1_amd64.deb) ...
Selecting previously deselected package libgl1-mesa-glx.
Unpacking libgl1-mesa-glx (from .../libgl1-mesa-glx_7.4.1-1_amd64.deb) ...
Selecting previously deselected package libglu1-mesa.
Unpacking libglu1-mesa (from .../libglu1-mesa_7.4.1-1_amd64.deb) ...
Selecting previously deselected package freeglut3.
Unpacking freeglut3 (from .../freeglut3_2.4.0-6.1_amd64.deb) ...
Selecting previously deselected package libamd2.2.0.
Unpacking libamd2.2.0 (from .../libamd2.2.0_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libaudio2.
Unpacking libaudio2 (from .../libaudio2_1.9.2-1_amd64.deb) ...
Selecting previously deselected package libgfortran3.
Unpacking libgfortran3 (from .../libgfortran3_4.4.0-5_amd64.deb) ...
Selecting previously deselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2-2_amd64.deb) ...
Selecting previously deselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2-2_amd64.deb) ...
Selecting previously deselected package libboost-thread1.38.0.
Unpacking libboost-thread1.38.0 (from .../libboost-thread1.38.0_1.38.0-6_amd64.deb) ...
Selecting previously deselected package libbtf1.1.0.
Unpacking libbtf1.1.0 (from .../libbtf1.1.0_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libcamd2.2.0.
Unpacking libcamd2.2.0 (from .../libcamd2.2.0_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libccolamd2.7.1.
Unpacking libccolamd2.7.1 (from .../libccolamd2.7.1_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libcolamd2.7.1.
Unpacking libcolamd2.7.1 (from .../libcolamd2.7.1_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-1_amd64.deb) ...
Selecting previously deselected package libcholmod1.7.1.
Unpacking libcholmod1.7.1 (from .../libcholmod1.7.1_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libcsparse2.2.3.
Unpacking libcsparse2.2.3 (from .../libcsparse2.2.3_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libcxsparse2.2.3.
Unpacking libcxsparse2.2.3 (from .../libcxsparse2.2.3_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libxi6.
Unpacking libxi6 (from .../libxi6_2%3a1.2.1-2_amd64.deb) ...
Selecting previously deselected package libxmu6.
Unpacking libxmu6 (from .../libxmu6_2%3a1.0.4-1_amd64.deb) ...
Selecting previously deselected package libglew1.5.
Unpacking libglew1.5 (from .../libglew1.5_1.5.1-4_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.20.3-1_amd64.deb) ...
Selecting previously deselected package libjpeg62.
Unpacking libjpeg62 (from .../libjpeg62_6b-14_amd64.deb) ...
Selecting previously deselected package libklu1.1.0.
Unpacking libklu1.1.0 (from .../libklu1.1.0_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package liblapack-dev.
Unpacking liblapack-dev (from .../liblapack-dev_3.2.1-1_amd64.deb) ...
Selecting previously deselected package liblcms1.
Unpacking liblcms1 (from .../liblcms1_1.18.dfsg-1_amd64.deb) ...
Selecting previously deselected package libldl2.0.1.
Unpacking libldl2.0.1 (from .../libldl2.0.1_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libmng1.
Unpacking libmng1 (from .../libmng1_1.0.9-1_amd64.deb) ...
Selecting previously deselected package libnewmat10ldbl.
Unpacking libnewmat10ldbl (from .../libnewmat10ldbl_1.10.4-4_amd64.deb) ...
Selecting previously deselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.37-1_amd64.deb) ...
Selecting previously deselected package libqtcore4.
Unpacking libqtcore4 (from .../libqtcore4_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-xml.
Unpacking libqt4-xml (from .../libqt4-xml_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-dbus.
Unpacking libqt4-dbus (from .../libqt4-dbus_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-script.
Unpacking libqt4-script (from .../libqt4-script_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.8.2-11_amd64.deb) ...
Selecting previously deselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.4-2_amd64.deb) ...
Selecting previously deselected package libqtgui4.
Unpacking libqtgui4 (from .../libqtgui4_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-designer.
Unpacking libqt4-designer (from .../libqt4-designer_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-network.
Unpacking libqt4-network (from .../libqt4-network_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-opengl.
Unpacking libqt4-opengl (from .../libqt4-opengl_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-sql.
Unpacking libqt4-sql (from .../libqt4-sql_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-qt3support.
Unpacking libqt4-qt3support (from .../libqt4-qt3support_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqt4-svg.
Unpacking libqt4-svg (from .../libqt4-svg_4.5.1-2_amd64.deb) ...
Selecting previously deselected package libqwt5-qt4.
Unpacking libqwt5-qt4 (from .../libqwt5-qt4_5.1.2-1_amd64.deb) ...
Selecting previously deselected package libsofa1.
Unpacking libsofa1 (from .../libsofa1_1.0~beta4-1_amd64.deb) ...
Selecting previously deselected package libsofa1-dev.
Unpacking libsofa1-dev (from .../libsofa1-dev_1.0~beta4-1_amd64.deb) ...
Selecting previously deselected package libumfpack5.4.0.
Unpacking libumfpack5.4.0 (from .../libumfpack5.4.0_1%3a3.4.0-1_amd64.deb) ...
Selecting previously deselected package libsuitesparse-dev.
Unpacking libsuitesparse-dev (from .../libsuitesparse-dev_1%3a3.4.0-1_amd64.deb) ...
dpkg: error processing /var/cache/apt/archives/libsuitesparse-dev_1%3a3.4.0-1_amd64.deb (--unpack):
 trying to overwrite `/usr/lib/libcsparse.so', which is also in package libsofa1-dev
Processing triggers for man-db ...
Errors were encountered while processing:
 /var/cache/apt/archives/libsuitesparse-dev_1%3a3.4.0-1_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)

This is a serious bug as it makes installation fail. Possible
solutions are to have the two packages conflict, to rename the common
file in one of the two packages, or to remove the file from one
package and have this package depend on the other package. File
diversions or a Replace relation are another possibility.

Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):

  usr/lib/libcsparse.so

This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package.

-Ralf.