[Python-modules-team] Bug#544274: python-numpy: "*** glibc detected *** ... " error when running numpy.test()
LUK ShunTim
shuntim.luk at polyu.edu.hk
Sun Aug 30 09:25:06 UTC 2009
Package: python-numpy
Version: 1:1.3.0-2
Severity: normal
Hi,
While running numpy.test(), it got hanged and shows
"*** glibc detected *** /usr/bin/python: free(): invalid next size (fast): 0x0000000001ac4d30 ***"
Here's the backtrace when run under gdb and forcing a break using ^C:
"Starting program: /usr/bin/python
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
[Thread debugging using libthread_db enabled]
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
Python 2.5.4 (r254:67916, Feb 18 2009, 03:00:47)
[GCC 4.3.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
(no debugging symbols found)
....
>>> import numpy
(no debugging symbols found)
....
>>> numpy.test()
Running unit tests for numpy
(no debugging symbols found)
....
NumPy version 1.3.0
NumPy is installed in /usr/lib/python2.5/site-packages/numpy
Python version 2.5.4 (r254:67916, Feb 18 2009, 03:00:47) [GCC 4.3.3]
nose version 0.11.1
(no debugging symbols found)
....
...................................................(no debugging symbols found)
................................SSSSSSSS..........................................................................................................................................................................................................................................................SSS.................................................................................................................................................................................(no debugging symbols found)
................(no debugging symbols found)
...................K...............................................................................................................(no debugging symbols found)
...........(no debugging symbols found)
(no debugging symbols found)
...........................(no debugging symbols found)
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..............................*** glibc detected *** /usr/bin/python: free(): invalid next size (fast): 0x0000000001ac4d30 ***
^C
Program received signal SIGINT, Interrupt.
0x00007ffff72c2efe in ?? () from /lib/libc.so.6
(gdb) bt
#0 0x00007ffff72c2efe in ?? () from /lib/libc.so.6
#1 0x00007ffff7261b1e in ?? () from /lib/libc.so.6
#2 0x00007ffff725e1cb in free () from /lib/libc.so.6
#3 0x00007ffff7df2512 in ?? () from /lib64/ld-linux-x86-64.so.2
#4 0x00007ffff7decebf in ?? () from /lib64/ld-linux-x86-64.so.2
#5 0x00007ffff7df2761 in ?? () from /lib64/ld-linux-x86-64.so.2
#6 0x00007ffff7dee2d6 in ?? () from /lib64/ld-linux-x86-64.so.2
#7 0x00007ffff7df20fb in ?? () from /lib64/ld-linux-x86-64.so.2
#8 0x00007ffff72ec250 in ?? () from /lib/libc.so.6
#9 0x00007ffff7dee2d6 in ?? () from /lib64/ld-linux-x86-64.so.2
#10 0x00007ffff72ec305 in ?? () from /lib/libc.so.6
#11 0x00007ffff72ec3f7 in __libc_dlopen_mode () from /lib/libc.so.6
#12 0x00007ffff72caa55 in ?? () from /lib/libc.so.6
#13 0x00007ffff7bd1d03 in pthread_once () from /lib/libpthread.so.0
#14 0x00007ffff72cab7c in backtrace () from /lib/libc.so.6
#15 0x00007ffff7252d0c in ?? () from /lib/libc.so.6
#16 0x00007ffff725c6c8 in ?? () from /lib/libc.so.6
#17 0x00007ffff725e1d6 in free () from /lib/libc.so.6
#18 0x00007ffff5dae78c in ?? ()
from /usr/lib/python2.5/site-packages/numpy/core/multiarray.so
#19 0x000000000048cc5f in PyEval_EvalFrameEx ()
#20 0x0000000000491ce2 in PyEval_EvalFrameEx ()
#21 0x00000000004924cd in PyEval_EvalCodeEx ()
---Type <return> to continue, or q <return> to quit---
#22 0x0000000000490f18 in PyEval_EvalFrameEx ()
#23 0x00000000004924cd in PyEval_EvalCodeEx ()
#24 0x00000000004dca89 in ?? ()
#25 0x0000000000418843 in PyObject_Call ()
#26 0x000000000048fac7 in PyEval_EvalFrameEx ()
#27 0x00000000004924cd in PyEval_EvalCodeEx ()
#28 0x00000000004dc992 in ?? ()
#29 0x0000000000418843 in PyObject_Call ()
#30 0x000000000041f6e8 in ?? ()
#31 0x0000000000418843 in PyObject_Call ()
#32 0x000000000046648c in ?? ()
#33 0x0000000000418843 in PyObject_Call ()
#34 0x000000000048e061 in PyEval_EvalFrameEx ()
#35 0x0000000000491ce2 in PyEval_EvalFrameEx ()
#36 0x00000000004924cd in PyEval_EvalCodeEx ()
#37 0x00000000004dca89 in ?? ()
#38 0x0000000000418843 in PyObject_Call ()
#39 0x000000000048fac7 in PyEval_EvalFrameEx ()
#40 0x00000000004924cd in PyEval_EvalCodeEx ()
#41 0x00000000004dc992 in ?? ()
#42 0x0000000000418843 in PyObject_Call ()
#43 0x000000000041f6e8 in ?? ()
#44 0x0000000000418843 in PyObject_Call ()
---Type <return> to continue, or q <return> to quit---
#45 0x000000000046648c in ?? ()
#46 0x0000000000418843 in PyObject_Call ()
#47 0x000000000048e061 in PyEval_EvalFrameEx ()
#48 0x00000000004924cd in PyEval_EvalCodeEx ()
#49 0x00000000004dca89 in ?? ()
#50 0x0000000000418843 in PyObject_Call ()
#51 0x000000000048fac7 in PyEval_EvalFrameEx ()
#52 0x00000000004924cd in PyEval_EvalCodeEx ()
#53 0x00000000004dc992 in ?? ()
#54 0x0000000000418843 in PyObject_Call ()
#55 0x000000000041f6e8 in ?? ()
#56 0x0000000000418843 in PyObject_Call ()
#57 0x000000000046648c in ?? ()
#58 0x0000000000418843 in PyObject_Call ()
#59 0x000000000048e061 in PyEval_EvalFrameEx ()
#60 0x00000000004924cd in PyEval_EvalCodeEx ()
#61 0x00000000004dca89 in ?? ()
#62 0x0000000000418843 in PyObject_Call ()
#63 0x000000000048fac7 in PyEval_EvalFrameEx ()
#64 0x00000000004924cd in PyEval_EvalCodeEx ()
#65 0x00000000004dc992 in ?? ()
#66 0x0000000000418843 in PyObject_Call ()
#67 0x000000000041f6e8 in ?? ()
---Type <return> to continue, or q <return> to quit---
#68 0x0000000000418843 in PyObject_Call ()
#69 0x000000000046648c in ?? ()
#70 0x0000000000418843 in PyObject_Call ()
#71 0x000000000048e061 in PyEval_EvalFrameEx ()
#72 0x00000000004924cd in PyEval_EvalCodeEx ()
#73 0x00000000004dca89 in ?? ()
#74 0x0000000000418843 in PyObject_Call ()
#75 0x000000000048fac7 in PyEval_EvalFrameEx ()
#76 0x00000000004924cd in PyEval_EvalCodeEx ()
#77 0x00000000004dc992 in ?? ()
#78 0x0000000000418843 in PyObject_Call ()
#79 0x000000000041f6e8 in ?? ()
#80 0x0000000000418843 in PyObject_Call ()
#81 0x000000000046648c in ?? ()
#82 0x0000000000418843 in PyObject_Call ()
#83 0x000000000048e061 in PyEval_EvalFrameEx ()
#84 0x00000000004924cd in PyEval_EvalCodeEx ()
#85 0x00000000004dca89 in ?? ()
#86 0x0000000000418843 in PyObject_Call ()
#87 0x000000000048fac7 in PyEval_EvalFrameEx ()
#88 0x00000000004924cd in PyEval_EvalCodeEx ()
#89 0x00000000004dc992 in ?? ()
#90 0x0000000000418843 in PyObject_Call ()
---Type <return> to continue, or q <return> to quit---
#91 0x000000000041f6e8 in ?? ()
#92 0x0000000000418843 in PyObject_Call ()
#93 0x000000000046648c in ?? ()
#94 0x0000000000418843 in PyObject_Call ()
#95 0x000000000048e061 in PyEval_EvalFrameEx ()
#96 0x00000000004924cd in PyEval_EvalCodeEx ()
#97 0x00000000004dca89 in ?? ()
#98 0x0000000000418843 in PyObject_Call ()
#99 0x000000000048fac7 in PyEval_EvalFrameEx ()
#100 0x00000000004924cd in PyEval_EvalCodeEx ()
#101 0x00000000004dc992 in ?? ()
#102 0x0000000000418843 in PyObject_Call ()
#103 0x000000000041f6e8 in ?? ()
#104 0x0000000000418843 in PyObject_Call ()
#105 0x000000000046648c in ?? ()
#106 0x0000000000418843 in PyObject_Call ()
#107 0x000000000048e061 in PyEval_EvalFrameEx ()
#108 0x00000000004924cd in PyEval_EvalCodeEx ()
#109 0x00000000004dca89 in ?? ()
#110 0x0000000000418843 in PyObject_Call ()
#111 0x000000000048fac7 in PyEval_EvalFrameEx ()
#112 0x00000000004924cd in PyEval_EvalCodeEx ()
#113 0x00000000004dc992 in ?? ()
---Type <return> to continue, or q <return> to quit---
#114 0x0000000000418843 in PyObject_Call ()
#115 0x000000000041f6e8 in ?? ()
#116 0x0000000000418843 in PyObject_Call ()
#117 0x000000000046648c in ?? ()
#118 0x0000000000418843 in PyObject_Call ()
#119 0x000000000048e061 in PyEval_EvalFrameEx ()
#120 0x0000000000491ce2 in PyEval_EvalFrameEx ()
#121 0x0000000000491ce2 in PyEval_EvalFrameEx ()
#122 0x00000000004924cd in PyEval_EvalCodeEx ()
#123 0x00000000004dca89 in ?? ()
#124 0x0000000000418843 in PyObject_Call ()
#125 0x000000000041f6e8 in ?? ()
#126 0x0000000000418843 in PyObject_Call ()
#127 0x000000000048e061 in PyEval_EvalFrameEx ()
#128 0x00000000004924cd in PyEval_EvalCodeEx ()
#129 0x00000000004dca89 in ?? ()
#130 0x0000000000418843 in PyObject_Call ()
#131 0x000000000041f6e8 in ?? ()
#132 0x0000000000418843 in PyObject_Call ()
#133 0x0000000000465f66 in ?? ()
#134 0x000000000046e04b in ?? ()
#135 0x0000000000418843 in PyObject_Call ()
#136 0x000000000048e061 in PyEval_EvalFrameEx ()
---Type <return> to continue, or q <return> to quit---
#137 0x00000000004924cd in PyEval_EvalCodeEx ()
#138 0x0000000000490f18 in PyEval_EvalFrameEx ()
#139 0x00000000004924cd in PyEval_EvalCodeEx ()
#140 0x00000000004926c2 in PyEval_EvalCode ()
#141 0x00000000004b1c08 in PyRun_InteractiveOneFlags ()
#142 0x00000000004b1e3e in PyRun_InteractiveLoopFlags ()
#143 0x00000000004b251e in PyRun_AnyFileExFlags ()
#144 0x0000000000414572 in Py_Main ()
#145 0x00007ffff72095c6 in __libc_start_main () from /lib/libc.so.6
#146 0x00000000004139b9 in _start ()"
Don't know if it's a numpy or python problem, though.
Regards,
ST
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (900, 'unstable'), (500, 'transitional'), (500, 'gutsy'), (500, 'experimental'), (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.30-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_HK.UTF-8, LC_CTYPE=en_US.UTF8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages python-numpy depends on:
ii libatlas3gf-base [liblapack.s 3.6.0-24 Automatically Tuned Linear Algebra
ii libblas3gf [libblas.so.3gf] 1.2-2 Basic Linear Algebra Subroutines 3
ii libc6 2.9-25 GNU C Library: Shared libraries
ii libgcc1 1:4.4.1-3 GCC support library
ii libgfortran3 4.4.1-3 Runtime library for GNU Fortran ap
ii liblapack3gf [liblapack.so.3g 3.2.1-1 library of linear algebra routines
ii python 2.5.4-2 An interactive high-level object-o
ii python-central 0.6.11 register and build utility for Pyt
python-numpy recommends no packages.
Versions of packages python-numpy suggests:
ii python-nose 0.11.1-1 test discovery and running for Pyt
pn python-numpy-dbg <none> (no description available)
pn python-numpy-doc <none> (no description available)
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