[Python-modules-team] Bug#598520: python-scipy: scipy.weave.inline compilation fails with gcc 4.4
Stefano Rivera
stefano at rivera.za.net
Wed Sep 29 17:03:10 UTC 2010
Package: python-scipy
Version: 0.7.2+dfsg1-1
Severity: normal
Tags: upstream
Bug #455661 applies to scipy too, thanks to an embedded blitz.
Test case from the Ubuntu bug (LP: #302649) attached, together with full
output.
| In file included from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
| from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
| from /home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
| /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In static member function ‘static long int blitz::_bz_abs<long int>::apply(long int)’:
| /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45: error: ‘labs’ is not a member of ‘std’
etc.
SR
-- System Information:
Debian Release: squeeze/sid
APT prefers testing
APT policy: (990, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-5-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_ZA.UTF-8, LC_CTYPE=en_ZA.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages python-scipy depends on:
ii libamd2.2.0 1:3.4.0-2 approximate minimum degree orderin
ii libblas3gf [libblas.so.3gf] 1.2-7 Basic Linear Algebra Reference imp
ii libc6 2.11.2-5 Embedded GNU C Library: Shared lib
ii libgcc1 1:4.4.4-8 GCC support library
ii libgfortran3 4.4.4-8 Runtime library for GNU Fortran ap
ii liblapack3gf [liblapack.so.3 3.2.1-8 library of linear algebra routines
ii libstdc++6 4.4.4-8 The GNU Standard C++ Library v3
ii libumfpack5.4.0 1:3.4.0-2 sparse LU factorization library
ii python 2.6.5-13 interactive high-level object-orie
ii python-central 0.6.16+nmu1 register and build utility for Pyt
ii python-numpy 1:1.4.1-4 Numerical Python adds a fast array
Versions of packages python-scipy recommends:
ii g++ [c++-compiler] 4:4.4.4-2 The GNU C++ compiler
ii g++-4.4 [c++-compiler] 4.4.4-8 The GNU C++ compiler
Versions of packages python-scipy suggests:
pn python-profiler <none> (no description available)
-- no debconf information
--
Stefano Rivera
http://tumbleweed.org.za/
H: +27 21 465 6908 C: +27 72 419 8559 UCT: x3127
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In file included from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from /home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In static member function ‘static long int blitz::_bz_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45: error: ‘labs’ is not a member of ‘std’
In file included from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/funcs.h:23,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/newet.h:23,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/et.h:21,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:2509,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from /home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static member function ‘static int blitz::Fn_abs<int>::apply(int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:503: error: call of overloaded ‘abs(int&)’ is ambiguous
/usr/include/c++/4.4/cmath:94: note: candidates are: double std::abs(double)
/usr/include/c++/4.4/cmath:98: note: float std::abs(float)
/usr/include/c++/4.4/cmath:102: note: long double std::abs(long double)
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static member function ‘static long int blitz::Fn_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:524: error: ‘labs’ is not a member of ‘std’
In file included from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from /home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In static member function ‘static long int blitz::_bz_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45: error: ‘labs’ is not a member of ‘std’
In file included from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/funcs.h:23,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/newet.h:23,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/et.h:21,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:2509,
from /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from /home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp:11:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static member function ‘static int blitz::Fn_abs<int>::apply(int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:503: error: call of overloaded ‘abs(int&)’ is ambiguous
/usr/include/c++/4.4/cmath:94: note: candidates are: double std::abs(double)
/usr/include/c++/4.4/cmath:98: note: float std::abs(float)
/usr/include/c++/4.4/cmath:102: note: long double std::abs(long double)
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In static member function ‘static long int blitz::Fn_abs<long int>::apply(long int)’:
/usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:524: error: ‘labs’ is not a member of ‘std’
Traceback (most recent call last):
File "weave_test.py", line 18, in <module>
scipy.weave.inline(code, ['foo'], type_converters=scipy.weave.converters.blitz)
File "/usr/lib/python2.6/dist-packages/scipy/weave/inline_tools.py", line 335, in inline
**kw)
File "/usr/lib/python2.6/dist-packages/scipy/weave/inline_tools.py", line 462, in compile_function
verbose=verbose, **kw)
File "/usr/lib/python2.6/dist-packages/scipy/weave/ext_tools.py", line 365, in compile
verbose = verbose, **kw)
File "/usr/lib/python2.6/dist-packages/scipy/weave/build_tools.py", line 288, in build_extension
raise e
scipy.weave.build_tools.CompileError: error: Command "g++ -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -fPIC -I/usr/lib/python2.6/dist-packages/scipy/weave -I/usr/lib/python2.6/dist-packages/scipy/weave/scxx -I/usr/lib/python2.6/dist-packages/scipy/weave/blitz -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c /home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.cpp -o /tmp/stefanor/python26_intermediate/compiler_ffd6959949a2fd8833943154602a6643/home/stefanor/.python26_compiled/sc_3ec397f0c53c3b3e50e2375deba7b7ed2.o" failed with exit status 1
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