[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_3 #2640
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Sep 20 18:11:48 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_amd64_3/2640/>
------------------------------------------
[...truncated 2020 lines...]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O3 \
@@ -323,14 +335,14 @@
-lpthread
In file included from ebwt.h:27:0,
from bowtie_inspect.cpp:10:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from bowtie_inspect.cpp:10:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O0 -g3 -DCOMPILER_OPTIONS="\"-O0 -g3 -Wl,--hash-style=both -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro\"" -Wl,--hash-style=both -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro \
@@ -341,14 +353,14 @@
-lpthread
In file included from ebwt.h:27:0,
from ebwt_build.cpp:11:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from ebwt_build.cpp:11:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O0 -g3 -DCOMPILER_OPTIONS="\"-O0 -g3 -Wl,--hash-style=both -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro\"" -Wl,--hash-style=both -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro \
@@ -359,14 +371,14 @@
-lpthread
In file included from ebwt.h:27:0,
from ebwt_build.cpp:11:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from ebwt_build.cpp:11:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O0 -g3 \
@@ -378,14 +390,14 @@
-lpthread
In file included from ebwt.h:27:0,
from ebwt_search.cpp:14:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from ebwt_search.cpp:14:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O0 -g3 \
@@ -397,14 +409,14 @@
-lpthread
In file included from ebwt.h:27:0,
from ebwt_search.cpp:14:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from ebwt_search.cpp:14:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O0 -g3 \
@@ -416,14 +428,14 @@
-lpthread
In file included from ebwt.h:27:0,
from bowtie_inspect.cpp:10:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from bowtie_inspect.cpp:10:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
g++ -O0 -g3 \
@@ -435,14 +447,14 @@
-lpthread
In file included from ebwt.h:27:0,
from bowtie_inspect.cpp:10:
-blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA<TStr>::buildSamples()':
-blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA<TStr>::buildSamples()’:
+blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
In file included from ebwt.h:27:0,
from bowtie_inspect.cpp:10:
-blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()':
-blockwise_sa.h:755:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs]
+blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA<TStr>::nextBlock()’:
+blockwise_sa.h:755:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs]
typedef typename Value<TStr>::Type TAlphabet;
^
make[2]: Leaving directory '/tmp/buildd/bowtie-1.1.2'
@@ -532,28 +544,41 @@
dh_shlibdeps
dh_installdeb
dh_gencontrol
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'bowtie-examples' in '../bowtie-examples_1.1.2-1_all.deb'.
-dpkg-deb: building package 'bowtie-dbgsym' in '../bowtie-dbgsym_1.1.2-1_amd64.deb'.
-dpkg-deb: building package 'bowtie' in '../bowtie_1.1.2-1_amd64.deb'.
+dpkg-deb : construction du paquet « bowtie-dbgsym » dans « ../bowtie-dbgsym_1.1.2-1_amd64.deb ».
+dpkg-deb : construction du paquet « bowtie-examples » dans « ../bowtie-examples_1.1.2-1_all.deb ».
+dpkg-deb : construction du paquet « bowtie » dans « ../bowtie_1.1.2-1_amd64.deb ».
dpkg-genbuildinfo >../bowtie_1.1.2-1_amd64.buildinfo
dpkg-distaddfile bowtie_1.1.2-1_amd64.buildinfo science optional
-dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-distaddfile: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
dpkg-genchanges -b >../bowtie_1.1.2-1_amd64.changes
-dpkg-genchanges: warning: package bowtie-dbgsym listed in files list but not in control info
-dpkg-genchanges: binary-only upload (no source code included)
+dpkg-genchanges: avertissement: paquet bowtie-dbgsym listé dans le fichier de liste des fichiers mais pas dans le fichier info
+dpkg-genchanges: envoi des binaires seulement (le code source n'est pas inclus)
dpkg-source --after-build bowtie-1.1.2
-dpkg-buildpackage: binary-only upload (no source included)
+dpkg-buildpackage: envoi d'un binaire seulement (aucune inclusion de code source)
+W: no hooks of type B found -- ignoring
+perl: warning: Setting locale failed.
+perl: warning: Please check that your locale settings:
+ LANGUAGE = (unset),
+ LC_ALL = "fr_CH.UTF-8",
+ LANG = "fr_CH.UTF-8"
+ are supported and installed on your system.
+perl: warning: Falling back to the standard locale ("C").
I: unmounting /sys filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting /dev/shm filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting dev/pts filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting run/shm filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting proc filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: cleaning the build env
-I: removing directory /var/cache/pbuilder/build//62318 and its subdirectories
-I: Current time: Sun Sep 20 06:01:28 GMT+12 2015
-I: pbuilder-time-stamp: 1442772088
+I: removing directory /var/cache/pbuilder/build//31520 and its subdirectories
+I: Current time: Mon Sep 21 08:11:39 GMT-14 2015
+I: pbuilder-time-stamp: 1442772699
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/logdiffs/unstable/amd64/bowtie_1.1.2-1.diff: 86.8% -- replaced with /var/lib/jenkins/userContent/reproducible/logdiffs/unstable/amd64/bowtie_1.1.2-1.diff.gz
b2/build.log: 86.8%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 87.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/logs/unstable/amd64/bowtie_1.1.2-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/tmp.qpT5YypbMX/tmp.2TgZNyw1Em
+ mv /srv/reproducible-results/tmp.qpT5YypbMX/tmp.2TgZNyw1Em /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/bowtie_1.1.2-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/bowtie_1.1.2-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/tmp.qpT5YypbMX
+ local TMPLOG=/srv/reproducible-results/tmp.qpT5YypbMX/tmp.aQHO35rFxQ
+ echo
+ tee -a /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/bowtie_1.1.2-1.rbuild.log
+ local TIMEOUT=30m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/tmp.qpT5YypbMX -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/tmp.qpT5YypbMX/dbd-tmp-JYxflyw
++ schroot --directory /srv/reproducible-results/tmp.qpT5YypbMX -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 34'
++ echo diffoscope 34
++ grep '^E: 15binfmt: update-binfmts: unable to open'
+ LOG_RESULT=
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/bowtie_1.1.2-1.rbuild.log
/var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/bowtie_1.1.2-1.rbuild.log: 83.6% -- replaced with /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/bowtie_1.1.2-1.rbuild.log.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html bowtie
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''bowtie'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-20 18:11:48.594358
CRITICAL: https://reproducible.debian.net/unstable/amd64/bowtie is unreproducible, but without diffoscope output.
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/buildinfo/unstable/amd64/bowtie_1.1.2-1_amd64.buildinfo
INFO: Finished at 2015-09-20 18:11:48.603884, took: 0:00:00.009538
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.qpT5YypbMX
+ false
+ rm -f /tmp/reproducible-lockfile-unstable-amd64-bowtie
Sun 20 Sep 18:11:48 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-4z2QfGsb, which will now be removed.
Build step 'Execute shell' marked build as failure
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