[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_4 #52800
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Oct 9 18:06:24 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_amd64_4/52800/------------------------------------------
[...truncated 12705 lines...]
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-201.vcf.gz -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/tb.vcf.gz -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/1kg.vcf.gz -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/metadata-whitespace.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-bnd.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/uncalled_genotypes.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/1kg.sites.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.0.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/freebayes.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/bcftools.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-ploidy.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.2.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/samtools.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-16.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/info-type-character.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/samples-space.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/mixed-filtering.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-140-file1.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/walk_refcall.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/contig_idonly.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/gatk.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-sv.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/null_genotype_mono.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-140-file3.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/parse-meta-line.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/gatk_26_meta.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue_49.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/walk_left.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/string_as_flag.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-140-file2.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1.vcf -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/__init__.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/prof.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/test_vcf.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__init__.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/filters.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/utils.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/model.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
-copying /build-1st/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/parser.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/__init__.py to __init__.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/prof.py to prof.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__init__.py to __init__.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/filters.py to filters.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/utils.py to utils.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/model.py to model.cpython-35.pyc
-byte-compiling /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/parser.py to parser.cpython-35.pyc
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__pycache__/utils.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__pycache__/filters.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__pycache__/model.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__pycache__/parser.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__pycache__/__init__.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/cparse.cpython-35m-x86_64-linux-gnu.so -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/cparse.pyx -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/__pycache__/test_vcf.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/__pycache__/__init__.cpython-35.pyc -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/__pycache__
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/tb.vcf.gz.tbi -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-201.vcf.gz.tbi -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-201.vcf.gz -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/tb.vcf.gz -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/1kg.vcf.gz -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/metadata-whitespace.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-bnd.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/uncalled_genotypes.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/1kg.sites.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.0.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/freebayes.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/bcftools.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-ploidy.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.2.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/samtools.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-16.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/info-type-character.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/samples-space.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/mixed-filtering.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-140-file1.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/walk_refcall.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/contig_idonly.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/gatk.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1-sv.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/null_genotype_mono.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-140-file3.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/parse-meta-line.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/gatk_26_meta.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue_49.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/walk_left.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/string_as_flag.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/issue-140-file2.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/example-4.1.vcf -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/__init__.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/prof.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/test/test_vcf.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/__init__.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/filters.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/utils.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/model.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+copying /build-2nd/python-pyvcf-0.6.7/.pybuild/pythonX.Y_3.5/build/vcf/parser.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/__init__.py to __init__.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/prof.py to prof.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/__init__.py to __init__.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/filters.py to filters.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/utils.py to utils.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/model.py to model.cpython-35.pyc
+byte-compiling /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/vcf/parser.py to parser.cpython-35.pyc
running install_egg_info
-Copying PyVCF.egg-info to /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/PyVCF-0.6.7.egg-info
+Copying PyVCF.egg-info to /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/lib/python3.5/dist-packages/PyVCF-0.6.7.egg-info
Skipping SOURCES.txt
running install_scripts
-creating /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin
-copying build/scripts-3.5/vcf_filter.py -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin
-copying build/scripts-3.5/vcf_melt -> /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin
-changing mode of /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin/vcf_filter.py to 755
-changing mode of /build-1st/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin/vcf_melt to 755
+creating /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin
+copying build/scripts-3.5/vcf_filter.py -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin
+copying build/scripts-3.5/vcf_melt -> /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin
+changing mode of /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin/vcf_filter.py to 775
+changing mode of /build-2nd/python-pyvcf-0.6.7/debian/python3-pyvcf/usr/bin/vcf_melt to 775
debian/rules override_dh_install
-make[1]: Entering directory '/build-1st/python-pyvcf-0.6.7'
+make[1] : on entre dans le répertoire « /build-2nd/python-pyvcf-0.6.7 »
dh_install
# move testdata to separate dir
mkdir -p debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples
@@ -3415,7 +3426,7 @@
# strip .py extension
mv debian/pyvcf/usr/bin/vcf_filter.py debian/pyvcf/usr/bin/vcf_filter
rm -rf debian/python-pyvcf/usr/bin
-make[1]: Leaving directory '/build-1st/python-pyvcf-0.6.7'
+make[1] : on quitte le répertoire « /build-2nd/python-pyvcf-0.6.7 »
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
@@ -3439,14 +3450,14 @@
dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Versions}
+dpkg-gencontrol: warning: package python-pyvcf: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Provides}
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Versions}
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Provides}
+dpkg-gencontrol: warning: package python3-pyvcf: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -O--buildsystem=pybuild
@@ -3455,8 +3466,8 @@
dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.7-2_all.deb'.
dpkg-deb: building package 'python3-pyvcf-dbgsym' in '../python3-pyvcf-dbgsym_0.6.7-2_amd64.deb'.
dpkg-deb: building package 'python-pyvcf-dbgsym' in '../python-pyvcf-dbgsym_0.6.7-2_amd64.deb'.
-dpkg-deb: building package 'python3-pyvcf' in '../python3-pyvcf_0.6.7-2_amd64.deb'.
dpkg-deb: building package 'python-pyvcf' in '../python-pyvcf_0.6.7-2_amd64.deb'.
+dpkg-deb: building package 'python3-pyvcf' in '../python3-pyvcf_0.6.7-2_amd64.deb'.
dpkg-genbuildinfo --build=any,all --buildinfo-id=amd64
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any,all >../python-pyvcf_0.6.7-2_amd64.changes
@@ -3464,12 +3475,14 @@
dpkg-source --after-build python-pyvcf-0.6.7
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/35143/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/35143/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/20717 and its subdirectories
-I: Current time: Sat Nov 11 12:27:15 GMT+12 2017
-I: pbuilder-time-stamp: 1510446435
+I: removing directory /srv/workspace/pbuilder/35143 and its subdirectories
+I: Current time: lundi 10 octobre 2016, 08:06:08 (UTC+1400)
+I: pbuilder-time-stamp: 1476036368
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-pyvcf_0.6.7-2.diff: 89.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-pyvcf_0.6.7-2.diff.gz
b2/build.log: 82.3%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 82.2%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/python-pyvcf_0.6.7-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-cUKArDoc/tmp.fPSIEl1k8c
+ mv /srv/reproducible-results/rbuild-debian-cUKArDoc/tmp.fPSIEl1k8c /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-pyvcf_0.6.7-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-pyvcf_0.6.7-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_buildinfo_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-cUKArDoc
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-cUKArDoc/tmp.CtrK6kDBba
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-cUKArDoc -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-cUKArDoc/dbd-tmp-adqegdm
++ schroot --directory /srv/reproducible-results/rbuild-debian-cUKArDoc -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 61'
++ echo diffoscope 61
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 61 will be used to compare the two builds:'
+ _log I: 'diffoscope 61 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-pyvcf_0.6.7-2.rbuild.log
++ date -u
+ echo -e 'Sun Oct 9 18:06:11 UTC 2016 I: diffoscope 61 will be used to compare the two builds:'
Sun Oct 9 18:06:11 UTC 2016 I: diffoscope 61 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-cUKArDoc -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-cUKArDoc/dbd-tmp-adqegdm ; diffoscope --html /srv/reproducible-results/rbuild-debian-cUKArDoc/python-pyvcf_0.6.7-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-cUKArDoc/python-pyvcf_0.6.7-2.diffoscope.txt /srv/reproducible-results/rbuild-debian-cUKArDoc/b1/python-pyvcf_0.6.7-2_amd64.buildinfo /srv/reproducible-results/rbuild-debian-cUKArDoc/b2/python-pyvcf_0.6.7-2_amd64.buildinfo'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-cUKArDoc/tmp.CtrK6kDBba
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Sun Oct 9 18:06:24 UTC 2016 E: python-pyvcf failed to build reproducibly in unstable on amd64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/python-pyvcf_0.6.7-2.diffoscope.txt’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/python-pyvcf_0.6.7-2.diffoscope.txt’: No space left on device
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-pyvcf_0.6.7-2.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-pyvcf_0.6.7-2.rbuild.log.gz: No space left on device
Sun 9 Oct 18:06:24 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-GYQUqcuz, which will now be removed.
Build step 'Execute shell' marked build as failure
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