[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_8 #26839
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Dec 9 16:15:38 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_i386_8/26839/------------------------------------------
[...truncated 2938 lines...]
Description:
r-cran-corpcor - GNU R for Estimation of Covariance and Correlation -- corpcor
Changes:
r-cran-corpcor (1.6.8-3) unstable; urgency=medium
.
* debian/copyright: fix: upstream didn't ship under GPL-2, but under GPL-3+.
Update my own license accordingly. Thanks Thorsten Alteholz <ftpmaster>
for spotting and reporting this bug.
Checksums-Sha1:
04cfb8101f0ab5ad6dca4d669c91f2338149d54e 88568 r-cran-corpcor_1.6.8-3_all.deb
ed379595a98634a5ab3d65aa88c0f0fb5654e130 6845 r-cran-corpcor_1.6.8-3_i386.buildinfo
Checksums-Sha256:
e2cbc963cad923669fb8f69018f9d578061d1fef54f13e6f56c56a32d5c17a5a 88568 r-cran-corpcor_1.6.8-3_all.deb
1cda44dbc8714755e25c32d915d8ee500ad73a31119852d7f6f3e64a39d12b38 6845 r-cran-corpcor_1.6.8-3_i386.buildinfo
Files:
10dca5d790ffcfb36ff6e4507d4e8ad5 88568 gnu-r optional r-cran-corpcor_1.6.8-3_all.deb
68d3930a8312f1d63feb8bc397b97937 6845 gnu-r optional r-cran-corpcor_1.6.8-3_i386.buildinfo
removed ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-corpcor_1.6.8-3.rbuild.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-cran-corpcor_1.6.8-3.build1.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-cran-corpcor_1.6.8-3.build2.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/i386/r-cran-corpcor_1.6.8-3.diffoscope.html’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/i386/r-cran-corpcor_1.6.8-3.diffoscope.txt.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/i386/r-cran-corpcor_1.6.8-3_i386.buildinfo’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-cran-corpcor_1.6.8-3.diff.gz’
Diff of the two buildlogs:
--
--- b1/build.log 2016-12-09 16:09:58.473075374 +0000
+++ b2/build.log 2016-12-09 16:11:28.872242119 +0000
@@ -1,7 +1,7 @@
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
-I: Current time: Thu Jan 11 10:32:19 -12 2018
-I: pbuilder-time-stamp: 1515709939
+I: Current time: Sat Dec 10 06:10:01 +14 2016
+I: pbuilder-time-stamp: 1481299801
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -19,7 +19,7 @@
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Thu Jul 21 18:57:28 2016 -12
+gpgv: Signature made Fri Jul 22 20:57:28 2016 +14
gpgv: using RSA key 33517A72A5E6B0C8
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-corpcor_1.6.8-3.dsc
@@ -27,6 +27,18 @@
dpkg-source: info: unpacking r-cran-corpcor_1.6.8.orig.tar.gz
dpkg-source: info: unpacking r-cran-corpcor_1.6.8-3.debian.tar.xz
I: Installing the build-deps
+I: user script /srv/workspace/pbuilder/2045/tmp/hooks/D01_modify_environment starting
+disorder-fs debug: Running on profitbricks-build12-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2045/tmp/hooks/D01_modify_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -191,7 +203,7 @@
Get: 123 http://ftp.de.debian.org/debian unstable/main i386 r-base-core i386 3.3.2-1 [21.1 MB]
Get: 124 http://ftp.de.debian.org/debian unstable/main i386 xauth i386 1:1.0.9-1 [38.5 kB]
Get: 125 http://ftp.de.debian.org/debian unstable/main i386 r-base-dev all 3.3.2-1 [4292 B]
-Fetched 88.1 MB in 1s (87.4 MB/s)
+Fetched 88.1 MB in 3s (28.1 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18599 files and directories currently installed.)
@@ -737,13 +749,15 @@
fakeroot is already the newest version (1.21-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/1st/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=i386 -rfakeroot
+I: user script /srv/workspace/pbuilder/2045/tmp/hooks/A01_modfiy_src_dir starting
+I: user script /srv/workspace/pbuilder/2045/tmp/hooks/A01_modfiy_src_dir finished
+I: Running cd /build/r-cran-corpcor-1.6.8/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-id=i386 -rfakeroot
dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
dpkg-buildpackage: info: source package r-cran-corpcor
dpkg-buildpackage: info: source version 1.6.8-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Joost van Baal-Ilić <joostvb at debian.org>
- dpkg-source --before-build r-cran-corpcor-1.6.8
+ dpkg-source --before-build 2nd
dpkg-buildpackage: info: host architecture i386
fakeroot debian/rules clean
test -x debian/rules
@@ -766,12 +780,12 @@
echo "R:Depends=r-base-core (>= 3.3.2-1), r-api-3" >> debian/r-cran-corpcor.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Fri, 22 Jul 2016 08:53:08 +0200\"" \
; \
else \
- R CMD INSTALL -l /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Fri, 22 Jul 2016 08:53:08 +0200\"" \
; \
@@ -785,14 +799,14 @@
** building package indices
** testing if installed package can be loaded
* DONE (corpcor)
-rm -vf /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/lib/R/site-library/R.css \
- /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/lib/R/site-library/corpcor/COPYING \
- /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/lib/R/site-library/corpcor/LICENSE.txt \
- /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/lib/R/site-library/corpcor/LICENSE
+rm -vf /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/lib/R/site-library/R.css \
+ /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/lib/R/site-library/corpcor/COPYING \
+ /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/lib/R/site-library/corpcor/LICENSE.txt \
+ /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/lib/R/site-library/corpcor/LICENSE
if test -f debian/overrides; then \
- install -d /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/share/lintian/overrides ; \
+ install -d /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/1st/r-cran-corpcor-1.6.8/debian/r-cran-corpcor/usr/share/lintian/overrides/r-cran-corpcor; \
+ /build/r-cran-corpcor-1.6.8/2nd/debian/r-cran-corpcor/usr/share/lintian/overrides/r-cran-corpcor; \
fi
Adding cdbs dependencies to debian/r-cran-corpcor.substvars
dh_installdirs -pr-cran-corpcor \
@@ -837,15 +851,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../r-cran-corpcor_1.6.8-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-corpcor-1.6.8
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/2045/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2045/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/34580 and its subdirectories
-I: Current time: Thu Jan 11 10:32:54 -12 2018
-I: pbuilder-time-stamp: 1515709974
+I: removing directory /srv/workspace/pbuilder/2045 and its subdirectories
+I: Current time: Sat Dec 10 06:11:28 +14 2016
+I: pbuilder-time-stamp: 1481299888
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-cran-corpcor_1.6.8-3.diff: 69.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-cran-corpcor_1.6.8-3.diff.gz
b2/build.log: 80.8%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 81.1%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-cran-corpcor_1.6.8-3.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-CcyAJqGF/tmp.HPKOh48EvB
+ mv /srv/reproducible-results/rbuild-debian-CcyAJqGF/tmp.HPKOh48EvB /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-corpcor_1.6.8-3.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-corpcor_1.6.8-3.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-corpcor_1.6.8-3_i386.changes b2/r-cran-corpcor_1.6.8-3_i386.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-CcyAJqGF
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-CcyAJqGF/tmp.25xntCDY0A
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-CcyAJqGF -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-CcyAJqGF/dbd-tmp-bT887hF
++ schroot --directory /srv/reproducible-results/rbuild-debian-CcyAJqGF -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 63'
++ echo diffoscope 63
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 63 will be used to compare the two builds:'
+ _log I: 'diffoscope 63 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-corpcor_1.6.8-3.rbuild.log
++ date -u
+ echo -e 'Fri Dec 9 16:11:31 UTC 2016 I: diffoscope 63 will be used to compare the two builds:'
Fri Dec 9 16:11:31 UTC 2016 I: diffoscope 63 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-CcyAJqGF -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-CcyAJqGF/dbd-tmp-bT887hF ; diffoscope --html /srv/reproducible-results/rbuild-debian-CcyAJqGF/r-cran-corpcor_1.6.8-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian-CcyAJqGF/r-cran-corpcor_1.6.8-3.diffoscope.txt /srv/reproducible-results/rbuild-debian-CcyAJqGF/b1/r-cran-corpcor_1.6.8-3_i386.changes /srv/reproducible-results/rbuild-debian-CcyAJqGF/b2/r-cran-corpcor_1.6.8-3_i386.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-CcyAJqGF/tmp.25xntCDY0A
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Fri Dec 9 16:11:38 UTC 2016 E: r-cran-corpcor failed to build reproducibly in unstable on i386.
Error: database is locked
Error: database is locked
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-corpcor_1.6.8-3.rbuild.log: 79.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-cran-corpcor_1.6.8-3.rbuild.log.gz
INFO: Starting at 2016-12-09 16:14:37.977975
CRITICAL: SQLite database locked, could not execute query:
CRITICAL: "SELECT r.status, r.version, r.build_date
CRITICAL: FROM results AS r JOIN sources AS s
CRITICAL: ON r.package_id=s.id WHERE s.name='r-cran-corpcor'
CRITICAL: AND s.architecture='amd64' AND s.suite='testing'"
CRITICAL: Exiting script.
INFO: Finished at 2016-12-09 16:15:38.145356, took: 0:01:00.167417
Warning: cannot update html pages for r-cran-corpcor
All cleanup done.
Fri 9 Dec 16:15:38 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-3WGzQnue, which will now be removed.
Build step 'Execute shell' marked build as failure
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