[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_21 #9267
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sat Jan 14 17:11:08 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_21/9267/------------------------------------------
[...truncated 96.00 KB...]
+cp lib/Bio/ASN1/EntrezGene/Indexer.pm blib/lib/Bio/ASN1/EntrezGene/Indexer.pm
+cp lib/Bio/ASN1/EntrezGene.pm blib/lib/Bio/ASN1/EntrezGene.pm
cp lib/Bio/ASN1/Sequence/Indexer.pm blib/lib/Bio/ASN1/Sequence/Indexer.pm
cp lib/Bio/ASN1/Sequence.pm blib/lib/Bio/ASN1/Sequence.pm
-cp lib/Bio/ASN1/EntrezGene.pm blib/lib/Bio/ASN1/EntrezGene.pm
-cp lib/Bio/ASN1/EntrezGene/Indexer.pm blib/lib/Bio/ASN1/EntrezGene/Indexer.pm
Manifying 4 pod documents
-make[1]: Leaving directory '/build/1st/libbio-asn1-entrezgene-perl-1.720'
+make[1]: Leaving directory '/build/libbio-asn1-entrezgene-perl-1.720/2nd'
dh_auto_test
make -j1 test TEST_VERBOSE=1
-make[1]: Entering directory '/build/1st/libbio-asn1-entrezgene-perl-1.720'
+make[1]: Entering directory '/build/libbio-asn1-entrezgene-perl-1.720/2nd'
PERL_DL_NONLAZY=1 PERL_USE_UNSAFE_INC=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ...........
1..4
@@ -349,26 +366,26 @@
ok 10 - rawdata() call
ok
All tests successful.
-Files=8, Tests=20, 1 wallclock secs ( 0.07 usr 0.02 sys + 0.58 cusr 0.11 csys = 0.78 CPU)
+Files=8, Tests=20, 1 wallclock secs ( 0.04 usr 0.02 sys + 0.57 cusr 0.08 csys = 0.71 CPU)
Result: PASS
-make[1]: Leaving directory '/build/1st/libbio-asn1-entrezgene-perl-1.720'
+make[1]: Leaving directory '/build/libbio-asn1-entrezgene-perl-1.720/2nd'
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_auto_install
- make -j1 install DESTDIR=/build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
-make[1]: Entering directory '/build/1st/libbio-asn1-entrezgene-perl-1.720'
+ make -j1 install DESTDIR=/build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
+make[1]: Entering directory '/build/libbio-asn1-entrezgene-perl-1.720/2nd'
Manifying 4 pod documents
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene.pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence.pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence.3pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm
-Installing /build/1st/libbio-asn1-entrezgene-perl-1.720/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene.3pm
-make[1]: Leaving directory '/build/1st/libbio-asn1-entrezgene-perl-1.720'
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence.pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene.pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence.3pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm
+Installing /build/libbio-asn1-entrezgene-perl-1.720/2nd/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene.3pm
+make[1]: Leaving directory '/build/libbio-asn1-entrezgene-perl-1.720/2nd'
dh_installdocs
dh_installchangelogs
dh_installexamples
@@ -388,15 +405,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../libbio-asn1-entrezgene-perl_1.720-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build libbio-asn1-entrezgene-perl-1.720
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/36343/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/36343/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/58097 and its subdirectories
-I: Current time: Sat Jan 14 05:10:16 -12 2017
-I: pbuilder-time-stamp: 1484413816
+I: removing directory /srv/workspace/pbuilder/36343 and its subdirectories
+I: Current time: Sat Feb 17 13:34:03 +14 2018
+I: pbuilder-time-stamp: 1518824043
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.diff: 73.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.diff.gz
b2/build.log: 76.1%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 76.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-Dmh7fqMp/tmp.ANbi7VXW2D
+ mv /srv/reproducible-results/rbuild-debian-Dmh7fqMp/tmp.ANbi7VXW2D /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/libbio-asn1-entrezgene-perl_1.720-1_amd64.changes b2/libbio-asn1-entrezgene-perl_1.720-1_amd64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-Dmh7fqMp
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-Dmh7fqMp/tmp.5pKNjWunL2
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-Dmh7fqMp -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-Dmh7fqMp/dbd-tmp-IbCakhM
++ schroot --directory /srv/reproducible-results/rbuild-debian-Dmh7fqMp -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.rbuild.log
++ date -u
+ echo -e 'Sat Jan 14 17:11:06 UTC 2017 I: diffoscope 67 will be used to compare the two builds:'
Sat Jan 14 17:11:06 UTC 2017 I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-Dmh7fqMp -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-Dmh7fqMp/dbd-tmp-IbCakhM ; diffoscope --html /srv/reproducible-results/rbuild-debian-Dmh7fqMp/libbio-asn1-entrezgene-perl_1.720-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-Dmh7fqMp/libbio-asn1-entrezgene-perl_1.720-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-Dmh7fqMp/b1/libbio-asn1-entrezgene-perl_1.720-1_amd64.changes /srv/reproducible-results/rbuild-debian-Dmh7fqMp/b2/libbio-asn1-entrezgene-perl_1.720-1_amd64.changes'
+ RESULT=0
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-Dmh7fqMp/tmp.5pKNjWunL2
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-Dmh7fqMp/libbio-asn1-entrezgene-perl_1.720-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-Dmh7fqMp/libbio-asn1-entrezgene-perl_1.720-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-Dmh7fqMp/b1/libbio-asn1-entrezgene-perl_1.720-1_amd64.changes /srv/reproducible-results/rbuild-debian-Dmh7fqMp/b2/libbio-asn1-entrezgene-perl_1.720-1_amd64.changes
========================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
command (total time: 0.000s)
----------------------------
0.000s 1 call cmp (internal)
has_same_content_as (total time: 0.000s)
----------------------------------------
0.000s 1 call abc.DotChangesFile
main (total time: 0.016s)
-------------------------
0.011s 2 calls outputs
0.005s 1 call parse_args
0.000s 1 call cleanup
recognizes (total time: 0.009s)
-------------------------------
0.009s 2 calls abc.DotChangesFile
0.000s 8 calls diffoscope.comparators.binary.FilesystemFile
_ _ _ _ _ _ _
| (_) |__ | |__ (_) ___ __ _ ___ _ __ / | ___ _ __ | |_ _ __ ___
| | | '_ \| '_ \| |/ _ \ _____ / _` / __| '_ \| |_____ / _ \ '_ \| __| '__/ _ \
| | | |_) | |_) | | (_) |_____| (_| \__ \ | | | |_____| __/ | | | |_| | | __/
|_|_|_.__/|_.__/|_|\___/ \__,_|___/_| |_|_| \___|_| |_|\__|_| \___|
_
______ _ ___ _ __ ___ _ __ ___ _ __| |
|_ / _` |/ _ \ '_ \ / _ \_____| '_ \ / _ \ '__| |
/ / (_| | __/ | | | __/_____| |_) | __/ | | |
/___\__, |\___|_| |_|\___| | .__/ \___|_| |_|
|___/ |_|
Sat Jan 14 17:11:07 UTC 2017 I: diffoscope 67 found no differences in the changes files, and a .buildinfo file also exists.
Sat Jan 14 17:11:07 UTC 2017 I: libbio-asn1-entrezgene-perl from unstable built successfully and reproducibly on amd64.
psql: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
psql: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
psql: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.rbuild.log: 73.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-asn1-entrezgene-perl_1.720-1.rbuild.log.gz
INFO: Starting at 2017-01-14 17:11:08.448439
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 950, in _do_get
return self._pool.get(wait, self._timeout)
File "/usr/lib/python3/dist-packages/sqlalchemy/util/queue.py", line 145, in get
raise Empty
sqlalchemy.util.queue.Empty
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/strategies.py", line 90, in connect
return dialect.connect(*cargs, **cparams)
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/default.py", line 377, in connect
return self.dbapi.connect(*cargs, **cparams)
File "/usr/lib/python3/dist-packages/psycopg2/__init__.py", line 164, in connect
conn = _connect(dsn, connection_factory=connection_factory, async=async)
psycopg2.OperationalError: could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/srv/jenkins/bin/reproducible_html_packages.py", line 13, in <module>
from reproducible_common import *
File "/srv/jenkins/bin/reproducible_common.py", line 126, in <module>
conn_db = DB_ENGINE.connect() # the local postgres reproducible db
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/base.py", line 1778, in connect
return self._connection_cls(self, **kwargs)
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/base.py", line 60, in __init__
self.__connection = connection or engine.raw_connection()
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/base.py", line 1847, in raw_connection
return self.pool.unique_connection()
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 280, in unique_connection
return _ConnectionFairy._checkout(self)
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 644, in _checkout
fairy = _ConnectionRecord.checkout(pool)
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 440, in checkout
rec = pool._do_get()
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 963, in _do_get
return self._create_connection()
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 285, in _create_connection
return _ConnectionRecord(self)
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 411, in __init__
self.connection = self.__connect()
File "/usr/lib/python3/dist-packages/sqlalchemy/pool.py", line 538, in __connect
connection = self.__pool._creator()
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/strategies.py", line 96, in connect
connection_invalidated=invalidated
File "/usr/lib/python3/dist-packages/sqlalchemy/util/compat.py", line 188, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=exc_value)
File "/usr/lib/python3/dist-packages/sqlalchemy/util/compat.py", line 181, in reraise
raise value.with_traceback(tb)
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/strategies.py", line 90, in connect
return dialect.connect(*cargs, **cparams)
File "/usr/lib/python3/dist-packages/sqlalchemy/engine/default.py", line 377, in connect
return self.dbapi.connect(*cargs, **cparams)
File "/usr/lib/python3/dist-packages/psycopg2/__init__.py", line 164, in connect
conn = _connect(dsn, connection_factory=connection_factory, async=async)
sqlalchemy.exc.OperationalError: (OperationalError) could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.5432"?
None None
Warning: cannot update HTML pages for libbio-asn1-entrezgene-perl
All cleanup done.
Sat 14 Jan 17:11:08 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-6ruzp13K, which will now be removed.
Build step 'Execute shell' marked build as failure
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