[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_2 #67689
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Wed Jan 25 22:22:03 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_2/67689/------------------------------------------
[...truncated 487.94 KB...]
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm
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+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
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+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/share/man/man3/Bio::Roary.3pm
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/create_pan_genome_plots
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/roary-pan_genome_reorder_spreadsheet
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/transfer_annotation_to_groups
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/query_pan_genome
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/roary-create_pan_genome_plots.R
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/parallel_all_against_all_blastp
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/create_pan_genome
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/protein_alignment_from_nucleotides
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/roary-query_pan_genome
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/pan_genome_assembly_statistics
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/iterative_cdhit
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/roary
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/pan_genome_core_alignment
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/pan_genome_post_analysis
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/pan_genome_reorder_spreadsheet
+Installing /build/roary-3.8.0+dfsg/2nd/debian/roary/usr/bin/extract_proteome_from_gff
+make[1]: Leaving directory '/build/roary-3.8.0+dfsg/2nd/.build/debian-build'
dh_installdocs
dh_installchangelogs
dh_installman
@@ -2032,15 +2043,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../roary_3.8.0+dfsg-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build roary-3.8.0+dfsg
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/29404/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/29404/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/61367 and its subdirectories
-I: Current time: Tue Feb 27 16:34:32 -12 2018
-I: pbuilder-time-stamp: 1519792472
+I: removing directory /srv/workspace/pbuilder/29404 and its subdirectories
+I: Current time: Thu Jan 26 12:22:01 +14 2017
+I: pbuilder-time-stamp: 1485382921
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/roary_3.8.0+dfsg-1.diff: 89.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/roary_3.8.0+dfsg-1.diff.gz
b2/build.log: 84.0%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 84.1%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/roary_3.8.0+dfsg-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-iFeoxCqu/tmp.V4KX0CcgXO
+ mv /srv/reproducible-results/rbuild-debian-iFeoxCqu/tmp.V4KX0CcgXO /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/roary_3.8.0+dfsg-1.rbuild.log
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/roary_3.8.0+dfsg-1.rbuild.log’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/roary_3.8.0+dfsg-1.rbuild.log’: No space left on device
+ cleanup_all
+ echo 'Starting cleanup.'
Starting cleanup.
+ '[' 0 = 1 ']'
+ '[' '!' -z '' ']'
+ '[' '!' -f /srv/reproducible-results/rbuild-debian-iFeoxCqu/tmp.V4KX0CcgXO ']'
+ gzip -9fvn /srv/reproducible-results/rbuild-debian-iFeoxCqu/tmp.V4KX0CcgXO
/srv/reproducible-results/rbuild-debian-iFeoxCqu/tmp.V4KX0CcgXO: 83.0% -- replaced with /srv/reproducible-results/rbuild-debian-iFeoxCqu/tmp.V4KX0CcgXO.gz
+ '[' master = master ']'
+ gen_package_html roary
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''roary'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2017-01-25 22:22:02.794933
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/roary_3.7.1+dfsg-1_amd64.buildinfo
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/roary didn't produce a buildlog, even though it has been built.
INFO: Finished at 2017-01-25 22:22:03.283176, took: 0:00:00.488259
+ cd -
+ cd
+ rm -r /srv/reproducible-results/rbuild-debian-iFeoxCqu
+ echo 'All cleanup done.'
All cleanup done.
Wed 25 Jan 22:22:03 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-LOXt7JPp, which will now be removed.
Build step 'Execute shell' marked build as failure
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