[Qa-jenkins-scm] Build failed in Jenkins: reproducible_debian_rebuilder_prototype #2248
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Wed Jan 27 03:23:07 GMT 2021
See <https://jenkins.debian.net/job/reproducible_debian_rebuilder_prototype/2248/display/redirect>
Changes:
------------------------------------------
[...truncated 20.46 KB...]
libzstd1 (= 1.4.5+dfsg-4),
linux-libc-dev (= 5.9.6-1),
littler (= 0.3.12-1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0),
m4 (= 1.4.18-4),
make (= 4.3-4),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20200918-1),
ncurses-bin (= 6.2+20200918-1),
node-html5shiv (= 3.7.3+dfsg-3),
node-jquery (= 3.5.1+dfsg+~3.5.4-1),
openssl (= 1.1.1h-1),
patch (= 2.7.6-6),
perl (= 5.32.0-5),
perl-base (= 5.32.0-5),
perl-modules-5.32 (= 5.32.0-5),
pkg-config (= 0.29.2-1),
po-debconf (= 1.0.21),
r-base-core (= 4.0.3-1),
r-base-dev (= 4.0.3-1),
r-bioc-annotationdbi (= 1.52.0-1),
r-bioc-biobase (= 2.50.0-1),
r-bioc-biocfilecache (= 1.14.0+dfsg-1),
r-bioc-biocgenerics (= 0.36.0-1),
r-bioc-biocparallel (= 1.24.1-1),
r-bioc-biomart (= 2.46.0+dfsg-1),
r-bioc-biostrings (= 2.58.0-1),
r-bioc-bsgenome (= 1.58.0-1),
r-bioc-delayedarray (= 0.16.0+dfsg-1),
r-bioc-genomeinfodb (= 1.26.0-1),
r-bioc-genomeinfodbdata (= 1.2.4-1),
r-bioc-genomicalignments (= 1.26.0-1),
r-bioc-genomicfeatures (= 1.42.0+dfsg-1),
r-bioc-genomicranges (= 1.42.0+dfsg-1),
r-bioc-iranges (= 2.24.0-1),
r-bioc-matrixgenerics (= 1.2.0-2),
r-bioc-rhtslib (= 1.22.0+dfsg-1),
r-bioc-rsamtools (= 2.6.0-1),
r-bioc-rtracklayer (= 1.50.0-1),
r-bioc-s4vectors (= 0.28.0-1),
r-bioc-summarizedexperiment (= 1.20.0+dfsg-1),
r-bioc-variantannotation (= 1.36.0-1),
r-bioc-xvector (= 0.30.0-1),
r-bioc-zlibbioc (= 1.36.0+dfsg-1),
r-cran-askpass (= 1.1-2),
r-cran-assertthat (= 0.2.1-2),
r-cran-backports (= 1.1.10-1),
r-cran-bh (= 1.66.0-1),
r-cran-biocmanager (= 1.30.10+dfsg-2),
r-cran-bit (= 4.0.4+dfsg-1),
r-cran-bit64 (= 4.0.5-1),
r-cran-bitops (= 1.0-6-5),
r-cran-blob (= 1.2.1-2),
r-cran-brio (= 1.1.0-2),
r-cran-callr (= 3.5.1-1),
r-cran-cli (= 2.1.0-1),
r-cran-cluster (= 2.1.0-2+b1),
r-cran-codetools (= 0.2-18-1),
r-cran-colorspace (= 2.0-0+dfsg-1),
r-cran-cowplot (= 1.1.0+dfsg-1),
r-cran-cpp11 (= 0.2.4-1),
r-cran-crayon (= 1.3.4-5),
r-cran-curl (= 4.3+dfsg-1+b1),
r-cran-dbi (= 1.1.0-3),
r-cran-dbplyr (= 2.0.0-1),
r-cran-desc (= 1.2.0-3),
r-cran-diffobj (= 0.3.2-1),
r-cran-digest (= 0.6.27-1),
r-cran-doparallel (= 1.0.16-1),
r-cran-dplyr (= 1.0.2-1),
r-cran-ellipsis (= 0.3.1-1),
r-cran-evaluate (= 0.14-2),
r-cran-fansi (= 0.4.1-1+b1),
r-cran-farver (= 2.0.3-1+b1),
r-cran-foreach (= 1.5.1-1),
r-cran-formatr (= 1.7-2),
r-cran-futile.logger (= 1.4.3-4),
r-cran-futile.options (= 1.0.1-3),
r-cran-generics (= 0.1.0-1),
r-cran-ggalluvial (= 0.12.2-2),
r-cran-ggdendro (= 0.1.22+dfsg-1),
r-cran-ggplot2 (= 3.3.2+dfsg-2),
r-cran-glue (= 1.4.2-1),
r-cran-gridbase (= 0.4-7-5),
r-cran-gtable (= 0.3.0+dfsg-2),
r-cran-hms (= 0.5.3-2),
r-cran-httr (= 1.4.2-1),
r-cran-isoband (= 0.2.2-1),
r-cran-iterators (= 1.0.13-1),
r-cran-jsonlite (= 1.7.1+dfsg-1),
r-cran-labeling (= 0.4.2-1),
r-cran-lambda.r (= 1.2.4-2),
r-cran-lattice (= 0.20-41-1+b1),
r-cran-lazyeval (= 0.2.2-1+b1),
r-cran-lifecycle (= 0.2.0-2),
r-cran-littler (= 0.3.12-1),
r-cran-magrittr (= 1.5-6),
r-cran-mass (= 7.3-53-1),
r-cran-matrix (= 1.2-18-1+b1),
r-cran-matrixstats (= 0.57.0-1),
r-cran-memoise (= 1.1.0-3),
r-cran-mgcv (= 1.8-33-1),
r-cran-mime (= 0.9-1+b1),
r-cran-munsell (= 0.5.0-2),
r-cran-nlme (= 3.1.150-1),
r-cran-nmf (= 0.23.0-1),
r-cran-openssl (= 1.4.3+dfsg-1),
r-cran-pillar (= 1.4.6-1),
r-cran-pkgbuild (= 1.1.0-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.0-1),
r-cran-pkgload (= 1.1.0-1),
r-cran-pkgmaker (= 0.32.2-1),
r-cran-plogr (= 0.2.0-3),
r-cran-plyr (= 1.8.6-2),
r-cran-pracma (= 2.2.9-2),
r-cran-praise (= 1.0.0-4),
r-cran-prettyunits (= 1.1.1-2),
r-cran-processx (= 3.4.4-1),
r-cran-progress (= 1.2.2-2),
r-cran-ps (= 1.4.0-1),
r-cran-purrr (= 0.3.4-1+b1),
r-cran-r6 (= 2.5.0-1),
r-cran-rappdirs (= 0.3.1-2),
r-cran-rcolorbrewer (= 1.1-2-3),
r-cran-rcpp (= 1.0.5-1),
r-cran-rcurl (= 1.98-1.2-1+b1),
r-cran-registry (= 0.5-1-2),
r-cran-rematch2 (= 2.1.2-2),
r-cran-reshape2 (= 1.4.4-2),
r-cran-rlang (= 0.4.8-1),
r-cran-rngtools (= 1.5-2),
r-cran-rprojroot (= 1.3-2-3),
r-cran-rsqlite (= 2.2.1-1),
r-cran-rstudioapi (= 0.13-1),
r-cran-scales (= 1.1.1-1),
r-cran-snow (= 1:0.4.3-2),
r-cran-stringi (= 1.5.3-1),
r-cran-stringr (= 1.4.0-2),
r-cran-sys (= 3.4-1),
r-cran-testthat (= 3.0.0-1),
r-cran-tibble (= 3.0.4-1),
r-cran-tidyr (= 1.1.2-1),
r-cran-tidyselect (= 1.1.0+dfsg-1),
r-cran-utf8 (= 1.1.4-2),
r-cran-vctrs (= 0.3.4-1),
r-cran-viridislite (= 0.3.0-4),
r-cran-waldo (= 0.2.3-1),
r-cran-withr (= 2.3.0-1),
r-cran-xml (= 3.99-0.5-1),
r-cran-xml2 (= 1.3.2-1+b1),
r-cran-xtable (= 1:1.8-4-2),
readline-common (= 8.1~rc2-2),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-5),
tar (= 1.30+dfsg-7),
tzdata (= 2020d-1),
ucf (= 3.0043),
unzip (= 6.0-25),
util-linux (= 2.36-3+b2),
x11-common (= 1:7.7+21),
xauth (= 1:1.0.10-1),
xdg-utils (= 1.1.3-2),
xz-utils (= 5.2.4-1+b1),
zip (= 3.0-11+b1),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1605694353"
+ mv r-bioc-mutationalpatterns_3.0.1+dfsg-1_all-buildd.buildinfo ..
###########################################################################################
+ output_echo 'fetching source package r-bioc-mutationalpatterns (3.0.1+dfsg-1)'
+ echo '###########################################################################################'
+ echo
++ date -u
Wed Jan 27 03:23:05 UTC 2021 - fetching source package r-bioc-mutationalpatterns (3.0.1+dfsg-1)
+ echo -e 'Wed Jan 27 03:23:05 UTC 2021 - fetching source package r-bioc-mutationalpatterns (3.0.1+dfsg-1)'
+ echo
+ dget --download-only --allow-unauthenticated https://deb.debian.org/debian/pool/main/r/r-bioc-mutationalpatterns/r-bioc-mutationalpatterns_3.0.1+dfsg-1.dsc
dget: retrieving https://deb.debian.org/debian/pool/main/r/r-bioc-mutationalpatterns/r-bioc-mutationalpatterns_3.0.1+dfsg-1.dsc
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 2692 100 2692 0 0 119k 0 --:--:-- --:--:-- --:--:-- 119k
dget: retrieving https://deb.debian.org/debian/pool/main/r/r-bioc-mutationalpatterns/r-bioc-mutationalpatterns_3.0.1+dfsg.orig.tar.xz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 1873k 100 1873k 0 0 8794k 0 --:--:-- --:--:-- --:--:-- 8794k
dget: retrieving https://deb.debian.org/debian/pool/main/r/r-bioc-mutationalpatterns/r-bioc-mutationalpatterns_3.0.1+dfsg-1.debian.tar.xz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 3024 100 3024 0 0 196k 0 --:--:-- --:--:-- --:--:-- 196k
+ dscverify r-bioc-mutationalpatterns_3.0.1+dfsg-1.dsc
r-bioc-mutationalpatterns_3.0.1+dfsg-1.dsc:
Good signature found
validating r-bioc-mutationalpatterns_3.0.1+dfsg.orig.tar.xz
validating r-bioc-mutationalpatterns_3.0.1+dfsg-1.debian.tar.xz
All files validated successfully.
++ mktemp -t debrebuild-cmd.XXXXXXXX
###########################################################################################
+ DEBREBUILD=/tmp/debrebuild-cmd.EgCNi26D
+ output_echo 'trying to debrebuild r-bioc-mutationalpatterns (3.0.1+dfsg-1), which means building instructions how to re-create the build environment as specified in https://buildinfos.debian.net/ftp-master.debian.org/buildinfo/2020/11/18/r-bioc-mutationalpatterns_3.0.1+dfsg-1_all-buildd.buildinfo'
+ echo '###########################################################################################'
+ echo
++ date -u
Wed Jan 27 03:23:06 UTC 2021 - trying to debrebuild r-bioc-mutationalpatterns (3.0.1+dfsg-1), which means building instructions how to re-create the build environment as specified in https://buildinfos.debian.net/ftp-master.debian.org/buildinfo/2020/11/18/r-bioc-mutationalpatterns_3.0.1+dfsg-1_all-buildd.buildinfo
+ echo -e 'Wed Jan 27 03:23:06 UTC 2021 - trying to debrebuild r-bioc-mutationalpatterns (3.0.1+dfsg-1), which means building instructions how to re-create the build environment as specified in https://buildinfos.debian.net/ftp-master.debian.org/buildinfo/2020/11/18/r-bioc-mutationalpatterns_3.0.1+dfsg-1_all-buildd.buildinfo'
+ echo
+ /srv/jenkins/bin/rb-debrebuild --timestamp=metasnap --no-respect-build-path ../r-bioc-mutationalpatterns_3.0.1+dfsg-1_all-buildd.buildinfo
+ tee /tmp/debrebuild-cmd.EgCNi26D
request to metasnap.d.n failed: HTTP::Response=HASH(0x564903c50480)->status_line at /srv/jenkins/bin/rb-debrebuild line 514.
../r-bioc-mutationalpatterns_3.0.1+dfsg-1_all-buildd.buildinfo was unsigned
retrieving snapshot.d.o data for r-bioc-mutationalpatterns 3.0.1+dfsg-1
retrieving required timestamps from metasnap.d.n
++ cut -d = -f2
++ grep '^BASE_DIST='
++ tail -1 /tmp/debrebuild-cmd.EgCNi26D
###########################################################################################
+ DISTRO=
+ case $DISTRO in
+ output_echo 'debrebuild failed.'
+ echo '###########################################################################################'
+ echo
++ date -u
Wed Jan 27 03:23:07 UTC 2021 - debrebuild failed.
+ echo -e 'Wed Jan 27 03:23:07 UTC 2021 - debrebuild failed.'
+ echo
+ egrep -q 'cannot find .* in dumpavail' /tmp/debrebuild-cmd.EgCNi26D
+ egrep -q 'Cannot locate the following packages via snapshots or the current repo/mirror' /tmp/debrebuild-cmd.EgCNi26D
Something went wrong with debrebuild, please take a look what exactly...
+ echo 'Something went wrong with debrebuild, please take a look what exactly...'
+ echo
+ exit 1
Wed 27 Jan 2021 03:23:07 AM UTC - reproducible_debian_rebuilder_prototype.sh stopped running as /tmp/jenkins-script-d2nxbwdQ, which will now be removed.
SSH EXIT CODE: 1
Build step 'Execute shell' marked build as failure
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