[Quantian-general] Re: Virtual Machine Version

Dirk Eddelbuettel edd at debian.org
Thu Mar 2 15:43:00 UTC 2006


Brent,

Thanks for the note. I am ccing quantian-general where I prefer Quantian
posts.  If you want to follow-up, you need to *subscribe* there first or
it'll bounce.

On 1 March 2006 at 22:43, Brent Myers wrote:
| Dirk,
| 
| Understanding that VMWare's Workbench is expensive software, their windows
| VM viewer is free. Anyone running windows can run a virtual machine with a

I do not know what VMWare Workbench is, but as I wrote on my blog at the end
December and beginning of January, the 'free as in beer' VMWare Player can
happily run Quantian on either a Windows or Linux host. I should update the
main Quantian page and mention it there more prominently too.

| custom OS for free. A VMWare version of Quantian would be really useful to a
| very wide audience - me in particular. Perhaps someone in the user community
| has access to VMWare. Hmm...I'm just now looking...there is a 30-day trial,
| I'll consider that option.

There is a lot more. You can now win thousands of dollars if you create a what
they call an appliance -- as I understand it, it simply means repackaging.
VMware even gives you free VMware Workstation copies to do that.

I am unlikely to have time to undertake that but if somebody else feels so
inclined... 

Regards, Dirk


| 
| Thanks for your efforts,
| Brent
| 
| D. Brenton Myers
| Graduate Fellow
| University of Missouri
| Soil Environmental and Atmospheric Sciences
| email: myersdb at missouri.edu
|  
| -----Original Message-----
| From: quantian-announce-bounces at lists.alioth.debian.org
| [mailto:quantian-announce-bounces at lists.alioth.debian.org] On Behalf Of Dirk
| Eddelbuettel
| Sent: Wednesday, March 01, 2006 8:34 PM
| To: quantian-announce
| Subject: [Quantian-announce] New Quantian release 0.7.9.2 available
| 
| 
| 
| (Please see note [1] below regarding recipients for this posting. Thanks!)
| 
| 
| Executive Summary: 
| 
|     Quantian 0.7.9.2 is the second Quantian release based on Knoppix 4.0.2.
|     Quantian adds hundreds of scientific / numeric packages, as well as the
|     an openMosix enabled 2.4.27 kernel, to the cdrom version of Knoppix. 
|     Version 0.7.9.2 ships as one compressed iso file of 2.7gb that is
|     
|     Relative to the previous release 0.7.9.1, several small bugs have been 
|     fixed, Sun's Java 1.5.0 SDK has been added along with several Java-based
|     applications (ImageJ, Weka, JGR, Mondrian), several other applications
|     have been added, yet more R packages from CRAN and BioC are included and
|     a few other packages have been updated.
|     
|     Quantian now contains over 2550 Debian packages, over 870 packages
|     for R and a few extra applications.
| 
|     Quantian comes as one bootable dvd iso of 2.85 gb (compressed) with
|     over 7.6 gb (uncompressed) of software of interest to quantitative 
|     analysists, scientists, researchers or students.
| 
| 
| Announcing Quantian release 0.7.9.2
| ===================================
| 
| 
| I   What is it?
| 
|     Quantian is a remastering of Knoppix, the self-configuring and directly
|     bootable cdrom/dvd that turns any pc or laptop into a full-featured
| Linux
|     workstation, and (parts of) clusterKnoppix, which adds support for
|     openMosix-based  cluster computing. However, Quantian differs from
|     Knoppix by having a particular focus on quantitative, numerical or 
|     scientific applications, and hence adds a very large set of programs of
|     interest to applied or theoretical workers in quantitative or
| data-driven
|     fields to the solid base provided by Knoppix..  
| 
|     See http://dirk.eddelbuettel.com/quantian.html for more details.
| 
|     
| II What Quantian highlights should I care about ?
| 
|     o Second release based on Knoppix 4.0.2: Derived from the cdrom version
| of
|       Knoppix, Quantian utilises the unionfs setup of Knoppix to combine two
|       compressed loop images for a total of 2.85 gb (from two files of 1.66
| gb
|       and 1.19 gb) corresponding to over 7.6 gb of software.
| 
|     o KDE 3.4/3.5, Kernel 2.6.12; added backport of kernel 2.4.27 with
|       openMosix patch for continued openMosix support including unionfs
|       support (that was missing in 0.7.9.1)
| 
|     o Some highlights in 0.7.9.2 are
| 
|       - Java support via the 'Java 1.5.0' SDK from Sun, installed via
|         the packages from www.debian-unofficial.org; this allowed us to
| 	add ImageJ, Weka, Mondrian and JGR.
|       
|       - some other packages that were added: celestia, cervisia, gcj,
|         gnuhtml2latex, inkscape, octplot, oprofile, prospect, praat, rserve,
| 	wxmaxima, xalan, (x)orsa as well as many library additions/upgrades
| 
|       - even more complete R support with 877 packages (25 from 'core R',
|         another 76 from Debian packages, and 779 directly installed from
| CRAN
|         and BioConductor, covering over 99% of all packages at CRAN and
|         BioConductor [ not counting a handful of windows-only CRAN packages]
|         for complete coverage as of 25 Feb 2006), ESS editing in Emacs /
|         XEmacs, GGobi visualization, Rpad webinterface, the award winning
| JGR
|         'Java GUI for R', RSPerl, Rserve, an early release of the RKward GUI
|         and more.
| 
|       - continued strong bioinformatics/biology support:
|         BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade,
|         bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki,
|         mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview,
|         t-coffee, textopo, ImageJ, and more;
| 
|       - continued strong mathematics / computational algrebra support:
| axiom,
|         blacs, calc, euler, gap, giac, mathomatic, maxima, pari, scalapack,
|         scilab, texmacs, yacas, yorick;
| 
|       - continued strong visualization / graphics support: dx, garlic, gdpc,
|         gnuplot, grace, grass, gri, illuminator, kst, labplot, mayavi,
|         matplot, proj, plplot, plotmtv, rasmol, starplot, vtk, xd3d, xgraph,
|         ygraph;  
|  
|       - large number of programming and scripting languages, editors, 
|         debuggers and libraries;
| 
|       - excellent latex support with auctex, lyx, kile, texmacs interface,
|         as well as numerous macro packages, bibtex tools;
| 
|       - office support via openoffice and koffice suites, abiword, gnumeric
|         and other applications;
| 
|       - plus all the tools and toys from the current Knoppix relase.
| 
|     o See http://dirk.eddelbuettel.com/quantian/changelog.html for details.
| 
|     o See http://dirk.eddelbuettel.com/quantian/howto.html for several
|       short HOWTOs on booting Quantian from hd on either Windows or Linux,
|       booting via a bootcd (such as clusterKnoppix), or botting from a 
|       USB memory device.  Contributions, corrections, and feedback on these
|       HOWTOs is always appreciated.
| 
| 
| III Where do I get it?
| 
|     o Downloads are available from the main host at Seattle at FHCRC:
| 
|             http://quantian.fhcrc.org/
| 	    rsync://quantian.fhcrc.org/quantian/
|       
|       and at the East Coast at 
| 
|             http://research.warnes.net/downloads/quantian/CURRENT/
| 	    ftp://research.warnes.net/users/edd/quantian/CURRENT/
| 
|       The most recent release is also available at
| 
|             http://quantian.alioth.debian.org/
| 
|       Note that file size of 2.75 gb may upset web caching system such
|       as squid. It may be prudent to rely on rsync or bittorrent instead
|       of http.
| 
|     o Bittorrents should be available shortly at
| 
|             http://www.tlm-project.org/public/distributions/quantian/
| 
|     o The main European mirrors should catch up shortly:
| 
|             http://sunsite.rediris.es/mirror/quantian
| 
|             http://sunsite.informatik.rwth-aachen.de/ftp/pub/Linux/quantian
| 
|     o CD/DVD vendors will probably update their offerings soon as well. 
|       See the Quantian site for a list.
| 
| 
| IV  Mailing lists
| 
|     o Two mailing lists exist for Quantian
| 
|         quantian-announce	  for announcements, intended to be low
| volume
|         quantian-general	  for general discussions about Quantian
| 
|       available via
| 
| 	http://alioth.debian.org/mail/?group_id=30303
| 
|       for subscription info etc., and start using the quantian-general lists
|       for general questions, comments, suggestions or discussions about 
|       Quantian.
| 
|       Quantian-general is subscribed to quantian-announce, so you only need
|       to subscribe to one (but can of course subscribe to both).  Posting to
|       quantian-general requires a subscription. 
| 
|       Reply-To: for this message is quantian-general at lists.alioth.debian.org
|       so that discussions can be continued on the list.
| 
| 
| V   Bugs fixed from 0.7.9.1
| 
|     o The missing default boot option for isolinux has been added, simply
|       pressing return at the boot prompt (or waiting) now yields kernel 2.6.
| 
|     o Marco Caliari figured out how to add unionfs support to Kernel 2.4.27,
|       so we now have openMosix support with the full 7.5 gb of software!
| 
|     o Progress from Debian's C++ transition allowed us to update many KDE
|       packages, including kdvi. KDE is in parts updates to release 3.5, some
|       applications are still from release 3.4. Several other applications
|       that were uninstallable in 0.7.9.1 because of C++ library conflicts
|       (celestia, gdal) are now included.
|      
| 
| VI  Known Bugs in 0.7.9.2
| 
|     o Only under kernel 2.4.27, kdesktop comes up with an error message
|       that needs to be acknowledged. Konsole then has a broken color schema.
|       Simply selecting a working schema, and manually running kdesktop fixes
|       this.
| 
|     o No other issue as of 28 Feb 2006. Please report anything you notice
|       to the quantian-general mailing list.
| 
| 
| VII Other items
| 
|     o Feedback / poll on package additions or removal
| 
|       As always, I welcome comments and suggestions about programs to be
|       added or removed. Existing Debian packages, and possibly existing
|       rpm packages, typically get inserted quite readily.
| 
|       Please send feedback, questions, comments, ... to the 
|       
| 	quantian-general at lists.alioth.debian.org
| 
|       list to maximise the number of eyes glancing at any one question.
|       Notice that a subscription to the list is needed in order to post.
| 
|     o Feedback would also be appreciated on ways to better communicate with
|       difference scientific communities that could be interested in
| Quantian.
| 
| 
| VIII Notes
| 
|     [1] This email is sent via the quantian-announce mailing list. I have
|         subscribed those whose email addresses are in my quantian mail
| folder 
|         due to prior emails. The quantian-announce mailing list only sends
|         moderator-approved posts -- so there should be no spam whatsoever. 
|         Anybody who considers this unwanted is kindly asked to send me
|         a private mail to get unsubscribed immediately.
| 
| 
| Best regards,  Dirk
| 
| 
| -- 
| Hell, there are no rules here - we're trying to accomplish something. 
|                                                   -- Thomas A. Edison
| 
| _______________________________________________
| Quantian-announce mailing list
| Quantian-announce at lists.alioth.debian.org
| http://lists.alioth.debian.org/mailman/listinfo/quantian-announce
| 
| 

-- 
Hell, there are no rules here - we're trying to accomplish something. 
                                                  -- Thomas A. Edison



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