--- a/debian/patches/reproducible-build	1970-01-01 01:00:00.000000000 +0100
--- b/debian/patches/reproducible-build	2015-12-28 03:17:11.152591794 +0100
@@ -0,0 +1,16 @@
+--- transdecoder-2.0.1+dfsg.orig/util/cufflinks_gtf_to_bed.pl
++++ transdecoder-2.0.1+dfsg/util/cufflinks_gtf_to_bed.pl
+@@ -68,11 +68,11 @@ main: {
+ 
+ 		my $genes_href = $genome_trans_to_coords{$scaff};
+ 
+-		foreach my $gene_id (keys %$genes_href) {
++		foreach my $gene_id (sort keys %$genes_href) {
+ 
+ 			my $trans_href = $genes_href->{$gene_id};
+ 
+-			foreach my $trans_id (keys %$trans_href) {
++			foreach my $trans_id (sort keys %$trans_href) {
+ 
+ 				my $coords_href = $trans_href->{$trans_id};
+ 
--- a/debian/patches/series	2015-12-28 03:15:02.514567260 +0100
--- b/debian/patches/series	2015-12-28 03:17:07.500534389 +0100
@@ -1,2 +1,3 @@
 cd-hit-est-rename
 fix-whatis
+reproducible-build