[Debian-astro-maintainers] Bug#1042254: specutils: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13
Lucas Nussbaum
lucas at debian.org
Wed Jul 26 21:07:26 BST 2023
Source: specutils
Version: 1.11.0-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20230726 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules binary
> dh binary --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:240: python3.11 setup.py config
> /usr/lib/python3/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
> !!
>
> ********************************************************************************
> The license_file parameter is deprecated, use license_files instead.
>
> By 2023-Oct-30, you need to update your project and remove deprecated calls
> or your builds will no longer be supported.
>
> See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
> ********************************************************************************
>
> !!
> parsed = self.parsers.get(option_name, lambda x: x)(value)
> /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
> !!
>
> ********************************************************************************
> Requirements should be satisfied by a PEP 517 installer.
> If you are using pip, you can try `pip install --use-pep517`.
> ********************************************************************************
>
> !!
> dist.fetch_build_eggs(dist.setup_requires)
> WARNING: The wheel package is not available.
> /usr/lib/python3/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
> !!
>
> ********************************************************************************
> The license_file parameter is deprecated, use license_files instead.
>
> By 2023-Oct-30, you need to update your project and remove deprecated calls
> or your builds will no longer be supported.
>
> See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
> ********************************************************************************
>
> !!
> parsed = self.parsers.get(option_name, lambda x: x)(value)
> running config
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:240: /usr/bin/python3 setup.py build
> /usr/lib/python3/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
> !!
>
> ********************************************************************************
> The license_file parameter is deprecated, use license_files instead.
>
> By 2023-Oct-30, you need to update your project and remove deprecated calls
> or your builds will no longer be supported.
>
> See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
> ********************************************************************************
>
> !!
> parsed = self.parsers.get(option_name, lambda x: x)(value)
> /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
> !!
>
> ********************************************************************************
> Requirements should be satisfied by a PEP 517 installer.
> If you are using pip, you can try `pip install --use-pep517`.
> ********************************************************************************
>
> !!
> dist.fetch_build_eggs(dist.setup_requires)
> WARNING: The wheel package is not available.
> /usr/lib/python3/dist-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`
> !!
>
> ********************************************************************************
> The license_file parameter is deprecated, use license_files instead.
>
> By 2023-Oct-30, you need to update your project and remove deprecated calls
> or your builds will no longer be supported.
>
> See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
> ********************************************************************************
>
> !!
> parsed = self.parsers.get(option_name, lambda x: x)(value)
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils
> copying specutils/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils
> copying specutils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils
> copying specutils/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_model_replace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_spectral_axis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_resample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_unc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_regions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_spectrum_collection.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/setup_package.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_fitting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_template_comparison.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_spectrum1d.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_continuum.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_region_extract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_smoothing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_arithmetic.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_correlation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_slicing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/test_dc_common_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> copying specutils/tests/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io
> copying specutils/io/parsing_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io
> copying specutils/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io
> copying specutils/io/registers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io
> copying specutils/io/_list_of_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/fitting
> copying specutils/fitting/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/fitting
> copying specutils/fitting/fitmodels.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/fitting
> copying specutils/fitting/continuum.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/fitting
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/flux.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/width.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/correlation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/template_comparison.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/location.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/moment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> copying specutils/analysis/uncertainty.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/analysis
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/extract_spectral_region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/smoothing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/estimate_uncertainty.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/model_replace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> copying specutils/manipulation/resample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/manipulation
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/utils
> copying specutils/utils/wcs_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/utils
> copying specutils/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/utils
> copying specutils/utils/quantity_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/spectrum_collection.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/spectrum_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/spectral_axis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/spectral_region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/spectrum_list.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> copying specutils/spectra/spectrum1d.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/spectra
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/hst_cos.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/sixdfgs_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/apogee.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/muscles_sed.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/twoslaq_lrg.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/sdss.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/generic_ecsv_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/manga.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/subaru_pfs_spec.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/jwst_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/twodfgrs_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/wcs_fits.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/ozdes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/hst_stis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/aaomega_2df.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/wigglez.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/gama.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/ascii.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/dc_common.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/generic_cube.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/galah.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> copying specutils/io/default_loaders/tabular_fits.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf
> copying specutils/io/asdf/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf
> copying specutils/io/asdf/converters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf
> copying specutils/io/asdf/extension.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders/tests
> copying specutils/io/default_loaders/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders/tests
> copying specutils/io/default_loaders/tests/test_jwst_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders/tests
> copying specutils/io/default_loaders/tests/test_apogee.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/default_loaders/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/tests
> copying specutils/io/asdf/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/tests
> copying specutils/io/asdf/tests/test_spectra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/tests
> copying specutils/io/asdf/tests/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/schemas
> copying specutils/io/asdf/schemas/spectrum1d-1.0.0.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/schemas
> copying specutils/io/asdf/schemas/spectrum_list-1.0.0.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/manifests
> copying specutils/io/asdf/manifests/specutils-1.0.0.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/io/asdf/manifests
> dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest --remote-data=none --doctest-rst
> [1m============================= test session starts ==============================[0m
> platform linux -- Python 3.11.4, pytest-7.4.0, pluggy-1.2.0
>
> Running tests with specutils version 1.11.0.
> Running tests in .pybuild/cpython3_3.11/build.
>
> Date: 2023-07-26T19:12:53
>
> Platform: Linux-5.10.0-23-cloud-amd64-x86_64-with-glibc2.37
>
> Executable: /usr/bin/python3.11
>
> Full Python Version:
> 3.11.4 (main, Jun 7 2023, 10:13:09) [GCC 12.2.0]
>
> encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8
> byteorder: little
> float info: dig: 15, mant_dig: 15
>
> Package versions:
> Numpy: 1.24.2
> Scipy: 1.10.1
> Matplotlib: 3.6.3
> astropy: 5.3.1
> gwcs: 0.18.3
> asdf: 2.15.0
> asdf-astropy: 0.4.0
> stdatamodels: not available
> ndcube: 2.0.3
> spectral-cube:
>
> Using Astropy options: remote_data: none.
>
> rootdir: /<<PKGBUILDDIR>>
> configfile: setup.cfg
> plugins: astropy-0.10.0, cov-4.1.0, filter-subpackage-0.1.2, openfiles-0.5.0, doctestplus-0.13.0, astropy-header-0.2.2, remotedata-0.4.0, hypothesis-6.82.0, asdf-2.15.0, mock-3.11.1, arraydiff-0.5.0
> collected 0 items / 1 error
>
> ==================================== ERRORS ====================================
> [31m[1m________________________ ERROR collecting test session _________________________[0m
> [1m[31m/usr/lib/python3/dist-packages/_pytest/config/__init__.py[0m:642: in _importconftest
> mod = import_path(conftestpath, mode=importmode, root=rootpath)[90m[39;49;00m
> [1m[31m/usr/lib/python3/dist-packages/_pytest/pathlib.py[0m:588: in import_path
> [94mraise[39;49;00m ImportPathMismatchError(module_name, module_file, path)[90m[39;49;00m
> [1m[31mE _pytest.pathlib.ImportPathMismatchError: ('specutils.conftest', '/<<PKGBUILDDIR>>/specutils/conftest.py', PosixPath('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/specutils/conftest.py'))[0m
> [36m[1m=========================== short test summary info ============================[0m
> [31mERROR[0m ../../.. - _pytest.pathlib.ImportPathMismatchError: ('specutils.conftest', '/build/spe...
> !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
> [31m=============================== [31m[1m1 error[0m[31m in 0.29s[0m[31m ===============================[0m
> E: pybuild pybuild:388: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest --remote-data=none --doctest-rst
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2023/07/26/specutils_1.11.0-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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