[Debian-med-packaging] Bug#586844: patch

[Piotr Ożarowski]

tags 585252 + patch
tags 586844 + patch
thanks

NMU debdiff attached

Please note that /usr/bin/runPmv still doesn't work (it doesn't work
with python2.5 as well, BTW). It warns about some deprecation warnings,
opens a window with a message that AutoLigandCommand module cannot be
loaded and then segfaults. I didn't try to fix it as it doesn't seem to
be related to #585252.

PS site/dist-packages should be cleaned, it contains data files, docs,
   icons, ...
PPS Debian Python policy suggests "python-pmv" as binary package name
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