[Debian-med-packaging] seaview_4.3.0-1_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Mon Jul 25 10:37:16 UTC 2011
Le Mon, Jul 25, 2011 at 10:33:02AM +0000, Debian FTP Masters a écrit :
>
> Accepted:
> seaview_4.3.0-1.debian.tar.gz
> to non-free/s/seaview/seaview_4.3.0-1.debian.tar.gz
> seaview_4.3.0-1.dsc
> to non-free/s/seaview/seaview_4.3.0-1.dsc
> seaview_4.3.0-1_amd64.deb
> to non-free/s/seaview/seaview_4.3.0-1_amd64.deb
> seaview_4.3.0.orig.tar.gz
> to non-free/s/seaview/seaview_4.3.0.orig.tar.gz
Build log attached.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.4 (25 Jun 2011) on anx191
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? seaview 4.3.0-1 (amd64) 25 Jul 2011 19:10 ?
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Package: seaview
Version: 4.3.0-1
Source Version: 4.3.0-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/seaview-DixehL/seaview-4.3.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/seaview-DixehL' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-6e1fb8e9-8952-4956-8cea-6c3b5ffe1111' with '«CHROOT»'
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? Update chroot ?
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Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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seaview_4.3.0-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-DSJxw0/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), libfltk1.3-dev, libjpeg-dev, libpng12-dev, libxft-dev, libxext-dev, libxinerama-dev, zlib1g-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), libfltk1.3-dev, libjpeg-dev, libpng12-dev, libxft-dev, libxext-dev, libxinerama-dev, zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-seaview-dummy' in `/«BUILDDIR»/resolver-owufpF/apt_archive/sbuild-build-depends-seaview-dummy.deb'.
OK
Reading package lists...
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? Install seaview build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
cdbs debhelper file fontconfig-config gettext gettext-base groff-base
html2text intltool-debian libcairo2 libcroco3 libdrm2 libexpat1
libexpat1-dev libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3
libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libgl1-mesa-glx
libglib2.0-0 libjpeg8 libjpeg8-dev libmagic1 libpcre3 libpipeline1
libpixman-1-0 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev
libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev
libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxinerama-dev
libxinerama1 libxml2 libxrender-dev libxrender1 libxxf86vm1 man-db
pkg-config po-debconf ttf-dejavu-core ucf x11proto-core-dev
x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-xext-dev
x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
devscripts dh-make gettext-doc groff fltk1.3-doc libcairo2-dev libjpeg-dev
libpng12-0-dev less www-browser libmail-box-perl
Recommended packages:
autotools-dev curl wget lynx-cur autopoint fluid libgl1-mesa-dev libgl-dev
libglu1-mesa-dev libglu-dev libgl1-mesa-dri libglib2.0-data shared-mime-info
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
cdbs debhelper file fontconfig-config gettext gettext-base groff-base
html2text intltool-debian libcairo2 libcroco3 libdrm2 libexpat1
libexpat1-dev libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3
libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libgl1-mesa-glx
libglib2.0-0 libjpeg8 libjpeg8-dev libmagic1 libpcre3 libpipeline1
libpixman-1-0 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev
libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev
libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxinerama-dev
libxinerama1 libxml2 libxrender-dev libxrender1 libxxf86vm1 man-db
pkg-config po-debconf sbuild-build-depends-seaview-dummy ttf-dejavu-core ucf
x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev
x11proto-xext-dev x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev
zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/24.7 MB of archives.
After this operation, 74.2 MB of additional disk space will be used.
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Setting up sbuild-build-depends-seaview-dummy (0.invalid.0) ...
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? Build environment ?
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Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-10 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_3.0.0-1
Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libdrm2_2.4.26-1 libexpat1_2.0.1-7 libexpat1-dev_2.0.1-7 libfltk-cairo1.3_1.3.0-5 libfltk-forms1.3_1.3.0-5 libfltk-gl1.3_1.3.0-5 libfltk-images1.3_1.3.0-5 libfltk1.3_1.3.0-5 libfltk1.3-dev_1.3.0-5 libfontconfig1_2.8.0-3 libfontconfig1-dev_2.8.0-3 libfreetype6_2.4.4-2 libfreetype6-dev_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgl1-mesa-glx_7.10.3-3 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libgpm2_1.20.4-3.4 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpcre3_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-2 libpng12-dev_1.2.46-2 libpod-plainer-perl_1.03-1 libpopt0_1.16-1 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpthread-stubs0_0.3-2.1 libpthread-stubs0-dev_0.3-2.1 libpwl5_0.11.2-4 libquadmath0_4.6.1-5 libreadline6_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.3-2 libx11-data_2:1.4.3-2 libx11-dev_2:1.4.3-2 libxau-dev_1:1.0.6-3 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcb1-dev_1.7-3 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.0-3 libxdmcp6_1:1.1.0-3 libxext-dev_2:1.3.0-3 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft-dev_2.2.0-3 libxft2_2.2.0-3 libxinerama-dev_2:1.1.1-3 libxinerama1_2:1.1.1-3 libxml2_2.7.8.dfsg-3 libxrender-dev_1:0.9.6-2 libxrender1_1:0.9.6-2 libxxf86vm1_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seaview-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 util-linux_2.19.1-4 x11proto-core-dev_7.0.22-1 x11proto-input-dev_2.0.2-2 x11proto-kb-dev_1.0.5-2 x11proto-render-dev_2:0.11.1-2 x11proto-xext-dev_7.2.0-3 x11proto-xinerama-dev_1.2.1-2 xorg-sgml-doctools_1:1.8-2 xtrans-dev_1.2.6-2 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
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? Build ?
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Unpack source
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dpkg-source: warning: extracting unsigned source package (seaview_4.3.0-1.dsc)
dpkg-source: info: extracting seaview in seaview-4.3.0
dpkg-source: info: unpacking seaview_4.3.0.orig.tar.gz
dpkg-source: info: unpacking seaview_4.3.0-1.debian.tar.gz
Check disc space
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Sufficient free space for build
User Environment
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HOME=/sbuild-nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
SCHROOT_SESSION_ID=sid-amd64-sbuild-6e1fb8e9-8952-4956-8cea-6c3b5ffe1111
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package seaview
dpkg-buildpackage: source version 1:4.3.0-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build seaview-4.3.0
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\\\"/usr/share/doc/seaview/seaview.html\\\" -DPHYMLNAME=\\\"phyml\\\"" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean
make[1]: *** No rule to make target `clean'.make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: [makefile-clean] Error 2 (ignored)
dh_clean
dpkg-source -b seaview-4.3.0
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building seaview using existing ./seaview_4.3.0.orig.tar.gz
dpkg-source: info: building seaview in seaview_4.3.0-1.debian.tar.gz
dpkg-source: info: building seaview in seaview_4.3.0-1.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\\\"/usr/share/doc/seaview/seaview.html\\\" -DPHYMLNAME=\\\"phyml\\\"" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS=""
make[1]: Entering directory `/«PKGBUILDDIR»'
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" custom.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" use_mase_files.cxx
use_mase_files.cxx: In function 'void save_regions(list_regions*, FILE*)':
use_mase_files.cxx:891:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
use_mase_files.cxx: In function 'int prepare_printout(const char*, char**, int, char**, int*, int, int, int, int, char*, int)':
use_mase_files.cxx:1415:47: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:1415:47: warning: 'vary_pos' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'char* save_alignment_or_region(const char*, char**, char**, char*, char**, int, int*, list_regions*, region*, known_format, int, int**, char**, int*, int, int, int, char**, char**, int, int, char**, const Fl_Menu_Item*, int)':
use_mase_files.cxx:1327:6: warning: 'err' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'int read_clustal_align(const char*, char***, char***, char***, char**, char**)':
use_mase_files.cxx:590:16: warning: 'wid_name' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:592:33: warning: 'curr_max_len' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:604:52: warning: 'l' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'int read_phylip_align(const char*, char***, char***, char***, char**, char**)':
use_mase_files.cxx:499:33: warning: 'seqname' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:499:56: warning: 'comments' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:499:12: warning: 'seq' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx:475:25: warning: 'q' may be used uninitialized in this function [-Wuninitialized]
use_mase_files.cxx: In function 'int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)':
use_mase_files.cxx:141:14: warning: 'lpre' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" regions.cxx
regions.cxx: In function 'void create_variable_mask(SEA_VIEW*, region*)':
regions.cxx:190:5: warning: 'segment' may be used uninitialized in this function [-Wuninitialized]
regions.cxx: In function 'void delete_region(SEA_VIEW*, int)':
regions.cxx:352:29: warning: 'previous' may be used uninitialized in this function [-Wuninitialized]
regions.cxx: In function 'const char* site_mask_creation_dialog(SEA_VIEW*, position_mask*)':
regions.cxx:539:10: warning: 'retval' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" load_seq.cxx
load_seq.cxx: In function 'int add_seq_to_align(SEA_VIEW*, char*, char*, int)':
load_seq.cxx:386:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" align.cxx
align.cxx: In function 'void unalign(SEA_VIEW*)':
align.cxx:1340:62: warning: 'calc_color_function' may be used uninitialized in this function [-Wuninitialized]
align.cxx: In function 'int replace_align_part(SEA_VIEW*, int, int, char*, int, int, int*, align_choice)':
align.cxx:415:61: warning: 'calc_color_function' may be used uninitialized in this function [-Wuninitialized]
align.cxx: In function 'void profile_align(SEA_VIEW*)':
align.cxx:1206:68: warning: 'calc_color_function' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" xfmatpt.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" comlines.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" resource.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" nexus.cxx
nexus.cxx: In function 'int process_chars_format(FILE*, int*, int*, int*, int*)':
nexus.cxx:337:8: warning: 'gap' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'char** process_taxa_taxlabels(FILE*, int)':
nexus.cxx:357:1: warning: 'p' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'list_segments* build_list_pairs(FILE*, int)':
nexus.cxx:440:39: warning: 'next' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'char** process_block_data(FILE*, int*, char***, int*, int*)':
nexus.cxx:654:59: warning: 'gap' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'char** process_block_characters(FILE*, int*, char***, int*, int*)':
nexus.cxx:686:61: warning: 'gap' may be used uninitialized in this function [-Wuninitialized]
nexus.cxx: In function 'int process_unal_format(FILE*)':
nexus.cxx:1008:5: warning: 'protein' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" viewasprots.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" racnuc_fetch.cxx
racnuc_fetch.cxx: In function 'void use_key_callback(Fl_Widget*, void*)':
racnuc_fetch.cxx:301:59: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" concatenate.cxx
concatenate.cxx: In function 'void do_concatenate_callback(Fl_Widget*, void*)':
concatenate.cxx:110:75: warning: 'gaps' may be used uninitialized in this function [-Wuninitialized]
concatenate.cxx:122:15: warning: 'found' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/raa_acnuc.c
csrc/raa_acnuc.c: In function 'fill_gfrag_buf':
csrc/raa_acnuc.c:570:12: warning: variable 'length' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_bit1':
csrc/raa_acnuc.c:1109:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_bit0':
csrc/raa_acnuc.c:1119:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_copylist':
csrc/raa_acnuc.c:1140:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_zerolist':
csrc/raa_acnuc.c:1150:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_setliststate':
csrc/raa_acnuc.c:1160:7: warning: variable 'reponse' set but not used [-Wunused-but-set-variable]
csrc/raa_acnuc.c: In function 'raa_nextmatchkey':
csrc/raa_acnuc.c:2094:15: warning: 'no_more' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/parser.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/md5.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/zsockr.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/misc_acnuc.c
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" trees.cxx
trees.cxx: In function 'matrix* Obs_Dist(allseq*, model*)':
trees.cxx:1113:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
trees.cxx: In function 'matrix* K80_dist_nogamma(allseq*)':
trees.cxx:1254:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
trees.cxx: In function 'int ludcmp(double**, int, int*, double*)':
trees.cxx:1835:8: warning: 'imax' may be used uninitialized in this function [-Wuninitialized]
trees.cxx: In function 'matrix* calc_dist_matrix(allseq*, int, int, char**, int)':
trees.cxx:455:10: warning: 'phyml_mat' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" treedraw.cxx
treedraw.cxx: In function 'int calc_text_size(char*, int*, int*)':
treedraw.cxx:1246:39: warning: 'ascent' may be used uninitialized in this function [-Wuninitialized]
treedraw.cxx:1245:39: warning: 'height' may be used uninitialized in this function [-Wuninitialized]
treedraw.cxx: In function 'const char* loadphylip(FD_nj_plot*, char*, char*)':
treedraw.cxx:1500:1: warning: 'p2' may be used uninitialized in this function [-Wuninitialized]
treedraw.cxx: At global scope:
treedraw.cxx:75:13: warning: 'void copy(Fl_Widget*, void*)' declared 'static' but never defined [-Wunused-function]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" addbootstrap.cxx
addbootstrap.cxx: In function 'char* preptree(char*, int*, noeud**, noeud***, branche**)':
addbootstrap.cxx:268:53: warning: 'branches' may be used uninitialized in this function [-Wuninitialized]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" least_squares_brl.cxx
least_squares_brl.cxx: In function 'int tree_btos(int**, int, double*, double*, double*, char**, noeud2**)':
least_squares_brl.cxx:409:172: warning: 'n3' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:402:17: warning: 'n2' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:396:17: warning: 'n1' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:309:47: warning: 'tax2' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:309:41: warning: 'tax1' may be used uninitialized in this function [-Wuninitialized]
least_squares_brl.cxx:348:3: warning: 'sommebi' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/dnapars.c
csrc/dnapars.c: In function 'fillin.isra.0':
csrc/dnapars.c:427:8: warning: 'rs' may be used uninitialized in this function [-Wuninitialized]
csrc/dnapars.c: In function 'dnapars':
csrc/dnapars.c:388:28: warning: 'ns' may be used uninitialized in this function [-Wuninitialized]
csrc/dnapars.c:272:9: note: 'ns' was declared here
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/protpars.c
csrc/protpars.c: In function 'protpars':
csrc/protpars.c:325:5: warning: 'aa' may be used uninitialized in this function [-Wuninitialized]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/lwl.c
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/bionj.c
csrc/bionj.c: In function 'Bionj':
csrc/bionj.c:71:3: warning: implicit declaration of function 'Clean_Tree_Connections' [-Wimplicit-function-declaration]
csrc/bionj.c: In function 'Finish':
csrc/bionj.c:133:3: warning: implicit declaration of function 'Connect_One_Edge_To_Two_Nodes' [-Wimplicit-function-declaration]
csrc/bionj.c: In function 'Best_Pair':
csrc/bionj.c:305:3: warning: implicit declaration of function 'Free' [-Wimplicit-function-declaration]
gcc -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" csrc/phyml_util.c
csrc/phyml_util.c: In function 'JC69_Dist':
csrc/phyml_util.c:119:9: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" pseudoterminal.cxx
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" unrooted.cxx
unrooted.cxx: In function 'void postscript_unrooted(FD_unrooted*, const char*)':
unrooted.cxx:443:6: warning: variable 'erreur' set but not used [-Wunused-but-set-variable]
unrooted.cxx: In function 'void my_draw_text(int, int, int, int, int, char*, void*)':
unrooted.cxx:775:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
unrooted.cxx:787:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
unrooted.cxx: In function 'const char* preptree_unrooted(const char*, FD_unrooted*)':
unrooted.cxx:1222:2: warning: 'p2' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx:1188:21: note: 'p2' was declared here
unrooted.cxx: In function 'int set_angles_noeuds(bignoeud*, bignoeud*, double, double*, double)':
unrooted.cxx:1487:74: warning: 'poids2' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx:1487:74: warning: 'poids1' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx:1446:6: warning: 'poids' may be used uninitialized in this function [-Wuninitialized]
unrooted.cxx: At global scope:
unrooted.cxx:44:13: warning: 'void parcourir_branches(noeud*, noeud*)' declared 'static' but never defined [-Wunused-function]
unrooted.cxx:45:13: warning: 'void process_branche(noeud*, noeud*, double)' declared 'static' but never defined [-Wunused-function]
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" postscript.cxx
postscript.cxx: In function 'int postscript_printout(SEA_VIEW*, const char*, int, int, paperformat, int, int, int)':
postscript.cxx:29:5: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
postscript.cxx:317:22: warning: 'vary_pos' may be used uninitialized in this function [-Wuninitialized]
postscript.cxx:39:6: note: 'vary_pos' was declared here
g++ -c -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" svg.cxx
g++ -o seaview -g -O2 -g -O2 -Wall -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -Wl,--as-needed -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" seaview.cxx custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o trees.o treedraw.o addbootstrap.o least_squares_brl.o dnapars.o protpars.o lwl.o bionj.o phyml_util.o pseudoterminal.o unrooted.o postscript.o svg.o \
-lfltk_images -lfltk \
-lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama \
-lX11 -lm -lz
seaview.cxx:4723:1: warning: "/*" within comment [-Wcomment]
seaview.cxx: In function 'void draw_cursor(Fl_Widget*, int, int, int, int)':
seaview.cxx:742:63: warning: array subscript has type 'char' [-Wchar-subscripts]
seaview.cxx: In function 'void draw_dna_seqs(Fl_Widget*, SEA_VIEW*)':
seaview.cxx:1015:48: warning: array subscript has type 'char' [-Wchar-subscripts]
seaview.cxx: In function 'void colors_callback(Fl_Widget*, void*)':
seaview.cxx:1708:15: warning: variable 'item' set but not used [-Wunused-but-set-variable]
seaview.cxx: In function 'void goto_callback(Fl_Widget*, void*)':
seaview.cxx:2498:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx: In function 'void handle_keyboard(SEA_VIEW*, unsigned int, int)':
seaview.cxx:4267:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx:4271:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx:4275:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx:4279:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
seaview.cxx: In function 'void lrdu_button_callback(Fl_Widget*, void*)':
seaview.cxx:1660:1: warning: 'newval' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void draw_dna_seqs(Fl_Widget*, SEA_VIEW*)':
seaview.cxx:1025:33: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'int insert_gaps_at(SEA_VIEW*, int, int, int)':
seaview.cxx:3423:30: warning: 'gapcolor' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void del_gap_only_sites(SEA_VIEW*)':
seaview.cxx:1487:27: warning: 'debut' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:1474:1: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'int delete_selected_seqs(SEA_VIEW*)':
seaview.cxx:1562:31: warning: 'temp_int' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:1553:69: warning: 'temp_data' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void edit_menu_callback(Fl_Widget*, long int)':
seaview.cxx:2335:14: warning: 'new_pos' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx: In function 'void handle_keyboard(SEA_VIEW*, unsigned int, int)':
seaview.cxx:4454:3: warning: 'count_each' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:4378:2: warning: 'count_each' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:4332:31: warning: 'count_each' may be used uninitialized in this function [-Wuninitialized]
seaview.cxx:4337:37: warning: 'count' may be used uninitialized in this function [-Wuninitialized]
make[1]: Leaving directory `/«PKGBUILDDIR»'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
DEB_MAKE_CHECK_TARGET unset, not running checks
DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
Adding cdbs dependencies to debian/seaview.substvars
dh_installdirs -pseaview
dh_installdocs -pseaview
dh_installexamples -pseaview
dh_installman -pseaview
dh_installinfo -pseaview
dh_installmenu -pseaview
dh_installcron -pseaview
dh_installinit -pseaview
dh_installdebconf -pseaview
dh_installemacsen -pseaview
dh_installcatalogs -pseaview
dh_installpam -pseaview
dh_installlogrotate -pseaview
dh_installlogcheck -pseaview
dh_installchangelogs -pseaview
dh_installudev -pseaview
dh_lintian -pseaview
dh_bugfiles -pseaview
dh_install -pseaview
dh_link -pseaview
dh_installmime -pseaview
dh_installgsettings -pseaview
dh_strip -pseaview
dh_compress -pseaview
dh_fixperms -pseaview
dh_makeshlibs -pseaview
dh_installdeb -pseaview
dh_perl -pseaview
dh_shlibdeps -pseaview
dh_gencontrol -pseaview
dh_md5sums -pseaview
dh_builddeb -pseaview
dpkg-deb: building package `seaview' in `../seaview_4.3.0-1_amd64.deb'.
dpkg-genchanges >../seaview_4.3.0-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build seaview-4.3.0
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110725-1911
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
seaview_4.3.0-1_amd64.changes:
??????????????????????????????
Format: 1.8
Date: Mon, 25 Jul 2011 18:57:42 +0900
Source: seaview
Binary: seaview
Architecture: source amd64
Version: 1:4.3.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
seaview - Multiplatform interface for sequence alignment and phylogeny
Changes:
seaview (1:4.3.0-1) unstable; urgency=low
.
* New upstream version with SVG output.
* Built on FLTK 1.3 (debian/control).
* Corrected location of the help file (debian/rules).
Checksums-Sha1:
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db07722f487c234cac57cbd4c26065ec494da435 306756 seaview_4.3.0.orig.tar.gz
289674a26e1f909e41a6603dec1c7a7e21688541 16294 seaview_4.3.0-1.debian.tar.gz
551ae137783b46c1bd158fa5d884200d37e77ff3 285668 seaview_4.3.0-1_amd64.deb
Checksums-Sha256:
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6fe4c0f5b65aaa2c0b6298e07269be476cd22cec0d60628125f43133cf23e702 306756 seaview_4.3.0.orig.tar.gz
089a077ae151270006bbdb55614a6a62e9352ba5110951a21b13e7f4fcb50028 16294 seaview_4.3.0-1.debian.tar.gz
32233694e54d3106d3f3ee4d07c792377186cbeb74735791cf626946f070d97d 285668 seaview_4.3.0-1_amd64.deb
Files:
605fdc17fa17ec48dbf5c02b3177155c 1219 non-free/science optional seaview_4.3.0-1.dsc
dc56d18e63c4c9110d9cf6198c86bd34 306756 non-free/science optional seaview_4.3.0.orig.tar.gz
5badf143a1a11b28e7ca7397c8c73220 16294 non-free/science optional seaview_4.3.0-1.debian.tar.gz
e41b36c3010d843b6fa4d45bbd78d096 285668 non-free/science optional seaview_4.3.0-1_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
seaview_4.3.0-1_amd64.deb
?????????????????????????
new debian package, version 2.0.
size 285668 bytes: control archive= 1728 bytes.
1265 bytes, 21 lines control
1165 bytes, 17 lines md5sums
551 bytes, 17 lines * postinst #!/bin/sh
467 bytes, 13 lines * postrm #!/bin/sh
Package: seaview
Version: 1:4.3.0-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 700
Depends: libc6 (>= 2.7), libfltk-images1.3, libfltk1.3 (>= 1.3.0), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1), libx11-6, zlib1g (>= 1:1.1.4)
Recommends: clustalw, muscle, phyml
Section: non-free/science
Priority: optional
Homepage: http://pbil.univ-lyon1.fr/software/seaview.html
Description: Multiplatform interface for sequence alignment and phylogeny
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
Alignments can be manually edited. It drives the programs Muscle or Clustal W
for multiple sequence alignment, and also allows one to use any external
alignment algorithm able to read and write FASTA-formatted files. It computes
phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or
by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic
trees on screen or PostScript files, and allows one to download sequences from
EMBL/GenBank/UniProt using the Internet.
drwxr-xr-x root/root 0 2011-07-25 19:11 ./
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/lib/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/lib/mime/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/lib/mime/packages/
-rw-r--r-- root/root 127 2008-01-14 19:21 ./usr/lib/mime/packages/seaview
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/bin/
-rwxr-xr-x root/root 497952 2011-07-25 19:11 ./usr/bin/seaview
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/menu/
-rw-r--r-- root/root 257 2007-07-21 12:14 ./usr/share/menu/seaview
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/man/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/man/man1/
-rw-r--r-- root/root 1700 2011-07-25 19:11 ./usr/share/man/man1/seaview.1.gz
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/pixmaps/
-rw-r--r-- root/root 3751 2006-10-02 20:45 ./usr/share/pixmaps/seaview.xpm
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/doc-base/
-rw-r--r-- root/root 288 2009-05-17 14:36 ./usr/share/doc-base/seaview-help
-rw-r--r-- root/root 137 2010-06-25 19:21 ./usr/share/doc-base/seaview-reference
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/applications/
-rw-r--r-- root/root 908 2008-01-14 19:21 ./usr/share/applications/seaview.desktop
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/mime/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/mime/packages/
-rw-r--r-- root/root 513 2008-01-14 19:23 ./usr/share/mime/packages/seaview.xml
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/doc/seaview/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/doc/seaview/examples/
-rw-r--r-- root/root 2002 2006-09-19 23:21 ./usr/share/doc/seaview/examples/nuc.aln
-rw-r--r-- root/root 2579 2006-09-19 23:21 ./usr/share/doc/seaview/examples/seq.fas.gz
-rw-r--r-- root/root 2086 2006-09-19 23:21 ./usr/share/doc/seaview/examples/dna.phy
-rw-r--r-- root/root 7771 2011-07-25 18:34 ./usr/share/doc/seaview/copyright
-rw-r--r-- root/root 40688 2011-07-20 22:09 ./usr/share/doc/seaview/seaview.html
-rw-r--r-- root/root 5378 2011-07-25 18:57 ./usr/share/doc/seaview/changelog.Debian.gz
-rw-r--r-- root/root 960 2010-01-06 22:16 ./usr/share/doc/seaview/references
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/icons/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/icons/hicolor/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/icons/hicolor/scalable/
drwxr-xr-x root/root 0 2011-07-25 19:11 ./usr/share/icons/hicolor/scalable/apps/
-rw-r--r-- root/root 5021 2008-11-23 21:57 ./usr/share/icons/hicolor/scalable/apps/seaview.svg
????????????????????????????????????????????????????????????????????????????????
? Post Build ?
????????????????????????????????????????????????????????????????????????????????
lintian
???????
P: seaview: no-upstream-changelog
I: Lintian run was successful.
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
cdbs* debhelper* file* fontconfig-config* gettext* gettext-base* groff-base*
html2text* intltool-debian* libcairo2* libcroco3* libdrm2* libexpat1*
libexpat1-dev* libfltk-cairo1.3* libfltk-forms1.3* libfltk-gl1.3*
libfltk-images1.3* libfltk1.3* libfltk1.3-dev* libfontconfig1*
libfontconfig1-dev* libfreetype6* libfreetype6-dev* libgl1-mesa-glx*
libglib2.0-0* libjpeg8* libjpeg8-dev* libmagic1* libpcre3* libpipeline1*
libpixman-1-0* libpng12-dev* libpopt0* libpthread-stubs0*
libpthread-stubs0-dev* libunistring0* libx11-6* libx11-data* libx11-dev*
libxau-dev* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxcb1-dev*
libxdamage1* libxdmcp-dev* libxdmcp6* libxext-dev* libxext6* libxfixes3*
libxft-dev* libxft2* libxinerama-dev* libxinerama1* libxml2* libxrender-dev*
libxrender1* libxxf86vm1* man-db* pkg-config* po-debconf*
sbuild-build-depends-seaview-dummy* ttf-dejavu-core* ucf* x11proto-core-dev*
x11proto-input-dev* x11proto-kb-dev* x11proto-render-dev* x11proto-xext-dev*
x11proto-xinerama-dev* xorg-sgml-doctools* xtrans-dev* zlib1g-dev*
0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded.
After this operation, 74.2 MB disk space will be freed.
(Reading database ... 14995 files and directories currently installed.)
Removing sbuild-build-depends-seaview-dummy ...
Removing cdbs ...
Removing debhelper ...
Removing file ...
Removing libxft-dev ...
Removing libfltk1.3-dev ...
Removing libfltk-images1.3 ...
Purging configuration files for libfltk-images1.3 ...
Removing libfltk-gl1.3 ...
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????????????????????????????????????????????????????????????????????????????????
? Summary ?
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Architecture: amd64
Build-Space: 8492
Build-Time: 18
Distribution: unstable
Install-Time: 79
Job: seaview_4.3.0-1.dsc
Lintian: pass
Package: seaview
Package-Time: 99
Source-Version: 1:4.3.0-1
Space: 8492
Status: successful
Version: 1:4.3.0-1
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Finished at 20110725-1911
Build needed 00:01:39, 8492k disc space
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