[Debian-med-packaging] Bug#625189: embassy-domalign: FTBFS: configure: error: C compiler cannot create executables

[Lucas Nussbaum]

Source: embassy-domalign
Version: 0.1.0+20100721-2
Severity: serious
Tags: wheezy sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20110502 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[1]: Entering directory `/build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721'
> if test -e /usr/share/misc/config.guess ; then \
> 		for i in ./config.guess ; do \
> 			if ! test -e $i.cdbs-orig ; then \
> 				mv $i $i.cdbs-orig ; \
> 				cp --remove-destination /usr/share/misc/config.guess $i ; \
> 			fi ; \
> 		done ; \
> 	fi
> if test -e /usr/share/misc/config.sub ; then \
> 		for i in ./config.sub ; do \
> 			if ! test -e $i.cdbs-orig ; then \
> 				mv $i $i.cdbs-orig ; \
> 				cp --remove-destination /usr/share/misc/config.sub $i ; \
> 			fi ; \
> 		done ; \
> 	fi
> make[1]: Leaving directory `/build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721'
> if test -e /usr/share/misc/config.guess ; then \
> 		for i in ./config.guess ; do \
> 			if ! test -e $i.cdbs-orig ; then \
> 				mv $i $i.cdbs-orig ; \
> 				cp --remove-destination /usr/share/misc/config.guess $i ; \
> 			fi ; \
> 		done ; \
> 	fi
> if test -e /usr/share/misc/config.sub ; then \
> 		for i in ./config.sub ; do \
> 			if ! test -e $i.cdbs-orig ; then \
> 				mv $i $i.cdbs-orig ; \
> 				cp --remove-destination /usr/share/misc/config.sub $i ; \
> 			fi ; \
> 		done ; \
> 	fi
> touch debian/stamp-autotools-files
> chmod a+x /build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721/./configure
> mkdir -p .
> cd . &&   CFLAGS="-g -O2 -g -O2 -Wall -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS=" -Wl,--as-needed" /build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721/./configure --build=x86_64-linux-gnu  --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/embassy-domalign" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules   --enable-systemlibs 
> configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /bin/mkdir -p
> checking for gawk... no
> checking for mawk... mawk
> checking whether make sets $(MAKE)... yes
> checking build system type... x86_64-pc-linux-gnu
> checking host system type... x86_64-pc-linux-gnu
> checking for style of include used by make... GNU
> checking for gcc... gcc
> checking whether the C compiler works... no
> configure: error: in `/build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721':
> configure: error: C compiler cannot create executables
> See `config.log' for more details.
> make: *** [debian/stamp-autotools] Error 77

The full build log is available from:
   http://people.debian.org/~lucas/logs/2011/05/02/embassy-domalign_0.1.0+20100721-2_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |