[Debian-med-packaging] Bug#671524: Bug#671524: samtools depth caps coverage at 8000

[Charles Plessy]

Le Fri, May 04, 2012 at 04:15:27PM -0400, Dominique Belhachemi a écrit :
> 
> samtools depth sets a cap of 8000 for coverage. It becomes an issue
> when used to calculate depth for targeted sequencing applications.
> Attached patch increases the threshold to 1 million.
> 
> Is this safe to apply?

Hi Dominique,

I have no idea, and a search with "bam_mplp_set_maxcnt" as a keyword returns
this bug as a first hit.

Perhaps you can ping upstream on the SourceForge mailing list ?

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan