[Debian-med-packaging] Bug#738530: ITP: ipig -- integrating PSMs into genome browser visualisations

Andreas Tille tille at debian.org
Mon Feb 10 09:26:14 UTC 2014


Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : ipig
  Version         : SVN r5
  Upstream Author : Mathias Kuhring <KuhringM at rki.de>
* URL             : http://sourceforge.net/projects/ipig/
* License         : BSD
  Programming Lang: Java
  Description     : integrating PSMs into genome browser visualisations
 iPiG targets the integration of peptide spectrum matches (PSMs) from
 mass spectrometry (MS) peptide identifications into genomic
 visualisations provided by genome browser such as the UCSC genome
 browser (http://genome.ucsc.edu/).
 .
 iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in
 text format and provides results in genome track formats (BED and GFF3
 files), which can be easily imported into genome browsers.

Remark: This package is maintained by the Debian Med team and the
packaging is available at 
  git://anonscm.debian.org/debian-med/ipig.git
It belongs to a set of packages listed at http://www.renard.it/.



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