[Debian-med-packaging] Bug#818397: salmon: FTBFS: 'MEM_F_SELF_OVLP' was not declared in this scope

[Andreas Tille]

Hi Sascha,

I'll take a look.  Thanks for following my mail to fix other maintainers
bugs

     Andreas.

On Tue, Apr 05, 2016 at 10:31:38PM +0100, Sascha Steinbiss wrote:
> Hi,
> 
> I have pushed a fix for this to git. I would be glad if someone could take a look.
> 
> Thanks
> Sascha
> 
> On Wed, 16 Mar 2016 13:36:46 -0700 Martin Michlmayr <tbm at hpe.com> wrote:
> > Package: salmon
> > Version: 0.4.2+ds1-2
> > Severity: serious
> > 
> > This package fails to build in unstable:
> > 
> > > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux
> > ...
> > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp: In function 'void sampleRound_(std::vector<std::pair<const TranscriptGroup, TGValue> >&, std::vector<int>&, std::vector<double>&, double, std::vector<int>&, MultinomialSampler&)':
> > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp:119:18: warning: unused variable 'classCount' [-Wunused-variable]
> > >          uint64_t classCount = eqClass.second.count;
> > >                   ^
> > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp: In function 'void mem_collect_intv(const SalmonOpts&, const mem_opt_t*, const bwt_t*, int, const uint8_t*, smem_aux_t*)':
> > > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp:159:36: error: 'MEM_F_SELF_OVLP' was not declared in this scope
> > >      int start_width = (opt->flag & MEM_F_SELF_OVLP)? 2 : 1;
> > 
> > -- 
> > Martin Michlmayr
> > Linux for HPE Helion, Hewlett Packard Enterprise
> > 
> > 
> 
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
> 

-- 
http://fam-tille.de