[Debian-med-packaging] Bug#821135: imagej: Crash running imagej

[Sebastien Jodogne]

Package: imagej
Version: 1.50i+dfsg-1
Severity: important

Dear Maintainer,

When I try and run the ImageJ package from Debian Sid, I currently get the following crash:

>>>>>
jodogne at unstable:~$ rm -rf .imagej
jodogne at unstable:~$ imagej
Open other images in this ImageJ panel as follows:
   imagej -p 1 <image1> [<image2> ... <imageN>]

#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x00007fe91d03ba8a, pid=1262, tid=140639753193216
#
# JRE version: OpenJDK Runtime Environment (8.0_77-b01) (build 
1.8.0_77-Debian-8u77-b03-3+b1-b1)
# Java VM: OpenJDK 64-Bit Server VM (25.77-b1 mixed mode linux-amd64 
compressed oops)
# Problematic frame:
# C  [libatk-bridge-2.0.so.0+0x10a8a]
#
# Failed to write core dump. Core dumps have been disabled. To enable 
core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /home/jodogne/hs_err_pid1262.log
#
# If you would like to submit a bug report, please visit:
#   http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
/usr/bin/imagej: line 427:  1262 Aborted 
/usr/lib/jvm/java-1.8.0-openjdk-amd64/bin/java -d64 -mx474m -cp 
/usr/share/java/ij.jar ij.ImageJ -ijpath /home/jodogne/.imagej -port1
<<<<<

This crash makes the imagej package totally unusable to me.

I have removed and purged all the JRE and JDK packages before making a fresh installation of imagej, but the crash is still there.

I thank you in advance for taking this problem into consideration!

Regards,
Sebastien-



-- System Information:
Debian Release: stretch/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.4.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=locale: Cannot set LC_ALL to default locale: No such file or directory
UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages imagej depends on:
ii  default-jre  2:1.8-57

imagej recommends no packages.

imagej suggests no packages.

-- debconf information:
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
	LANGUAGE = "en_US:en",
	LC_ALL = (unset),
	LC_TIME = "fr_BE.UTF-8",
	LC_MONETARY = "fr_BE.UTF-8",
	LC_ADDRESS = "fr_BE.UTF-8",
	LC_TELEPHONE = "fr_BE.UTF-8",
	LC_NAME = "fr_BE.UTF-8",
	LC_MEASUREMENT = "fr_BE.UTF-8",
	LC_IDENTIFICATION = "fr_BE.UTF-8",
	LC_NUMERIC = "fr_BE.UTF-8",
	LC_PAPER = "fr_BE.UTF-8",
	LANG = "en_US.UTF-8"
    are supported and installed on your system.
perl: warning: Falling back to a fallback locale ("en_US.UTF-8").
locale: Cannot set LC_ALL to default locale: No such file or directory