[Debian-med-packaging] Bug#848768: biojava4-live: FTBFS: [javac] /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.java:27: error: package org.jgrapht does not exist

[Andreas Tille]

Hi Olivier and Ximin,

I stripped the quote of the build log below but to me it seems to be
related to the jmol upgrade.

Any help to get this fixed would be really welcome.

Kind regards

      Andreas.

On Mon, Dec 19, 2016 at 10:08:48PM +0100, Lucas Nussbaum wrote:
> Source: biojava4-live
> Version: 4.2.4+dfsg-1
> Severity: serious
> Tags: stretch sid
> User: debian-qa at lists.debian.org
> Usertags: qa-ftbfs-20161219 qa-ftbfs
> Justification: FTBFS on amd64
> 
> Hi,
> 
> During a rebuild of all packages in sid, your package failed to build on
> amd64.
> ...
> >     [javac] 		UndirectedGraph<Integer, DefaultEdge> graph = new SimpleGraph<Integer, DefaultEdge>(
> >     [javac] 		                                                                       ^
> >     [javac]   symbol:   class DefaultEdge
> >     [javac]   location: class SymmetryTools
> >     [javac] /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java:481: error: cannot find symbol
> >     [javac] 				DefaultEdge.class);
> >     [javac] 				^
> >     [javac]   symbol:   class DefaultEdge
> >     [javac]   location: class SymmetryTools
> >     [javac] Note: Some input files use or override a deprecated API.
> >     [javac] Note: Recompile with -Xlint:deprecation for details.
> >     [javac] Note: /<<BUILDDIR>>/biojava4-live-4.2.4+dfsg/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/MetalBondConsumer.java uses unchecked or unsafe operations.
> >     [javac] Note: Recompile with -Xlint:unchecked for details.
> >     [javac] 67 errors
> > 
> > BUILD FAILED

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